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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013178 ID=TCONS_00013178|Name=TCONS_00013178|organism=Clytia hemisphaerica|type=transcript|length=2357bp
taattatttatgtGTCCTACTGTTCTTCTTTCAAGGATTTTTTAAGGAAT
GGAAATTCTTTAtacaagaaaaatataaacttGAAAAAGGAAAGAGGtgg
aaaaagattttcagaCAAAATTCAATCTTCAAGCTCGGGTTACAAACTTT
TAAAGAGTTATAGTTTCCCATTCTACTTGGCCTTCATATTGATTTGACTA
ACGTTGAGTTTGTTGAGATTGAATAAACATTATTGATATTTTAACTGACA
GATTTTCCTCGATTAATCTGTTCAAAAGTCTCAAATGTCAACTTGTAGAT
TTGTTTTTCAAGAAGGAATTCTGTTGAAAAGCCAACATAAAAATAGAAGA
TTCGATTCTATAAGGGATGTGTGCGTCTGATTTCAATACAGAGTAACTTC
TTGTGCGATACGATAAAACTGttgaattcaattttcaattggaGAATTGA
TTAAACTATCTTATTTCGTTAATTAGGATTCCAGATGATTTGGTGAAATA
AAACAGCTCTCCTGATTAAACGATCAACATTGACACATtttatttcattg
cttttagAGACAAAAAAGACCAATTGATATTAAAAATATGATGAAGATTT
TGTTGTGATAGATTGAGTTTAGTTTAGACGAGATGCTTGGTTTAGGACGT
TACTCTCAACATAAAAAATTGAACACACAACCAGATAAGGAAGATTTTTC
AGAAGACGAACATTGTGGTAGCGATGACGATGATGATCTTTCCACTTTTC
GAATACCGCAAGAAAACGATGCTTTCCAAGTCACCTTCCTCAGTGAAGAA
ACATTAAGTGCTGTAGAAGGAAAGGATTACCAAGACATTGTCAAAGATGT
TACTAAACAACGTTTCTTAACCATGAACGCGTTGAGCCAATCCAAACGTC
TGTGTCTTTCAATTAATGAGATCGGACTGACCGTCACACCCAATTCAGGG
AAACCGACCAACGATTCTTTGAATGAAACTTTCGAAACTCCTGAACTCGT
TTTTATTTCATCCAGCACTCAATACAAGAAAGTTTTAACATTGATTTGTC
GTAAATGTAACGAACAGACAAATGCTACTTTGTATGTTTTCGTatgtcaa
aatgaaaaagaccCTCGCAAAATACTGGATCTGTGTGCGAAACGTATTTC
GAAAGGTGAAACTGTTCTCGATATCAAACGGCAGGGTGACCCAGATTCGC
TACGTTTTATATACAATGCGGAGAATTCACGACCAGGAAAGTTGAACATT
AAAGAAGACAgatttgaaaaccaaaacacaACCAAGGACGTTTTCTCTCC
TTCTTCCAACTTCGATTTAGACGACGAATTTTCGCAGCTAGCACTGAAAC
GTAACGAGCGTTTACCGGAGCACATGCAAGACAAAACTGTCGAATCTGCT
CTCCTCCTTCAAAGCTCAGACTTTACACCTAACAAGAGCCACACCCGCAC
AAATAGTAGCAATATGGCAAATAACAGCGGAAACAACTTTTTTGTATCGA
ACTTTTTTTCGTCACCATATAGTCGTGTATCATCTGGCTTGAAGTAACAT
TTCTTTTAGAACCATTGCGAACTACAATTTGACACTTATTAACACTGAAT
GATATTTTTAACacttcgaaattcattttttgaattttttaataagcacA
ATTTTATTTATTATCAGAAAGCACAGAAACTAATTTTATAAGACCCTTTG
ATCGTTCAATAAAAAGCTCCCTTTCATTACTACATAGAGATTTGGACGGA
AAGGTGGTCTGCGTTAAACTTCAaccctcaattttttttaaccaaGCAAA
CTTTTGGAAATGCAGACCCAAGGCAATTCTTCACGAATCTCTTTTATCCA
TTCGCTTTCccaattttgttttatttttcgttttttgtaaATTACTGAGC
TGAGATTTTATCGATAGATTTTTTTAGATTATAGATAAAAGATTGTAGAT
ATAGATATAGATcagattttatttcaaacatCGGCGATGAAGGTATGGTT
TTACTGGACTTTTTTACGTTCTCCATTGAATTCCCCTCTTAAATCTTGGA
AGACCCCTGTATCAGAACTACAAAACTTTTGATTTAAGCTTCTGGTGAAC
TTTTCAATTGCACCAAAGCACTGAGACATTGGTCTTATCATGCATTTTTT
AGATATCGCTCCCGAAAACTTGAAATAGTATTAACTTCCTAATTTTGTGG
GAAGTATTGGAAATAAATTTTATGGTaacgaaaataattttgttgaaGGC
TTTTAATTTTTATAGACCTTATTGATAGCTATGGTAGATTTGAAACTGAT
TCCCTGAAAATTAATTGCCGttcttgaatttgaaatttaattttgattat
attttta Run BLAST on NCBI protein sequence of TCONS_00013178-protein >TCONS_00013178-protein ID=TCONS_00013178-protein|Name=TCONS_00013178-protein|organism=Clytia hemisphaerica|type=polypeptide|length=304bp
MLGLGRYSQHKKLNTQPDKEDFSEDEHCGSDDDDDLSTFRIPQENDAFQV
TFLSEETLSAVEGKDYQDIVKDVTKQRFLTMNALSQSKRLCLSINEIGLT
VTPNSGKPTNDSLNETFETPELVFISSSTQYKKVLTLICRKCNEQTNATL
YVFVCQNEKDPRKILDLCAKRISKGETVLDIKRQGDPDSLRFIYNAENSR
PGKLNIKEDRFENQNTTKDVFSPSSNFDLDDEFSQLALKRNERLPEHMQD
KTVESALLLQSSDFTPNKSHTRTNSSNMANNSGNNFFVSNFFSSPYSRVS
SGLK Run BLAST on NCBI transcript from alignment at sc0000162:51016..53372 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013178 ID=TCONS_00013178|Name=TCONS_00013178|organism=Clytia hemisphaerica|type=transcript|length=2357bp|location=Sequence derived from alignment at sc0000162:51016..53372 (Clytia hemisphaerica)
taaaaatataatcaaaattaaatttcaaattcaagaaCGGCAATTAATTT
TCAGGGAATCAGTTTCAAATCTACCATAGCTATCAATAAGGTCTATAAAA
ATTAAAAGCCttcaacaaaattattttcgttACCATAAAATTTATTTCCA
ATACTTCCCACAAAATTAGGAAGTTAATACTATTTCAAGTTTTCGGGAGC
GATATCTAAAAAATGCATGATAAGACCAATGTCTCAGTGCTTTGGTGCAA
TTGAAAAGTTCACCAGAAGCTTAAATCAAAAGTTTTGTAGTTCTGATACA
GGGGTCTTCCAAGATTTAAGAGGGGAATTCAATGGAGAACGTAAAAAAGT
CCAGTAAAACCATACCTTCATCGCCGatgtttgaaataaaatctgATCTA
TATCTATATCTACAATCTTTTATCTATAATCTAAAAAAATCTATCGATAA
AATCTCAGCTCAGTAATttacaaaaaacgaaaaataaaacaaaattggGA
AAGCGAATGGATAAAAGAGATTCGTGAAGAATTGCCTTGGGTCTGCATTT
CCAAAAGTTTGCttggttaaaaaaaattgagggtTGAAGTTTAACGCAGA
CCACCTTTCCGTCCAAATCTCTATGTAGTAATGAAAGGGAGCTTTTTATT
GAACGATCAAAGGGTCTTATAAAATTAGTTTCTGTGCTTTCTGATAATAA
ATAAAATTgtgcttattaaaaaattcaaaaaatgaatttcgaagtGTTAA
AAATATCATTCAGTGTTAATAAGTGTCAAATTGTAGTTCGCAATGGTTCT
AAAAGAAATGTTACTTCAAGCCAGATGATACACGACTATATGGTGACGAA
AAAAAGTTCGATACAAAAAAGTTGTTTCCGCTGTTATTTGCCATATTGCT
ACTATTTGTGCGGGTGTGGCTCTTGTTAGGTGTAAAGTCTGAGCTTTGAA
GGAGGAGAGCAGATTCGACAGTTTTGTCTTGCATGTGCTCCGGTAAACGC
TCGTTACGTTTCAGTGCTAGCTGCGAAAATTCGTCGTCTAAATCGAAGTT
GGAAGAAGGAGAGAAAACGTCCTTGGTtgtgttttggttttcaaatcTGT
CTTCTTTAATGTTCAACTTTCCTGGTCGTGAATTCTCCGCATTGTATATA
AAACGTAGCGAATCTGGGTCACCCTGCCGTTTGATATCGAGAACAGTTTC
ACCTTTCGAAATACGTTTCGCACACAGATCCAGTATTTTGCGAGggtctt
tttcattttgacatACGAAAACATACAAAGTAGCATTTGTCTGTTCGTTA
CATTTACGACAAATCAATGTTAAAACTTTCTTGTATTGAGTGCTGGATGA
AATAAAAACGAGTTCAGGAGTTTCGAAAGTTTCATTCAAAGAATCGTTGG
TCGGTTTCCCTGAATTGGGTGTGACGGTCAGTCCGATCTCATTAATTGAA
AGACACAGACGTTTGGATTGGCTCAACGCGTTCATGGTTAAGAAACGTTG
TTTAGTAACATCTTTGACAATGTCTTGGTAATCCTTTCCTTCTACAGCAC
TTAATGTTTCTTCACTGAGGAAGGTGACTTGGAAAGCATCGTTTTCTTGC
GGTATTCGAAAAGTGGAAAGATCATCATCGTCATCGCTACCACAATGTTC
GTCTTCTGAAAAATCTTCCTTATCTGGTTGTGTGTTCAATTTTTTATGTT
GAGAGTAACGTCCTAAACCAAGCATCTCGTCTAAACTAAACTCAATCTAT
CACAACAAAATCTTCATCATATTTTTAATATCAATTGGTCTTTTTTGTCT
ctaaaagcaatgaaataaaATGTGTCAATGTTGATCGTTTAATCAGGAGA
GCTGTTTTATTTCACCAAATCATCTGGAATCCTAATTAACGAAATAAGAT
AGTTTAATCAATTCtccaattgaaaattgaattcaaCAGTTTTATCGTAT
CGCACAAGAAGTTACTCTGTATTGAAATCAGACGCACACATCCCTTATAG
AATCGAATCTTCTATTTTTATGTTGGCTTTTCAACAGAATTCCTTCTTGA
AAAACAAATCTACAAGTTGACATTTGAGACTTTTGAACAGATTAATCGAG
GAAAATCTGTCAGTTAAAATATCAATAATGTTTATTCAATCTCAACAAAC
TCAACGTTAGTCAAATCAATATGAAGGCCAAGTAGAATGGGAAACTATAA
CTCTTTAAAAGTTTGTAACCCGAGCTTGAAGATTGAATTTTGtctgaaaa
tctttttccaCCTCTTTCCTTTTTCaagtttatatttttcttgtaTAAAG
AATTTCCATTCCTTAAAAAATCCTTGAAAGAAGAACAGTAGGACacataa
ataatta Coding sequence (CDS) from alignment at sc0000162:51016..53372 >TCONS_00013178 ID=TCONS_00013178|Name=TCONS_00013178|organism=Clytia hemisphaerica|type=CDS|length=915bp|location=Sequence derived from alignment at sc0000162:51016..53372 (Clytia hemisphaerica)
TTACTTCAAGCCAGATGATACACGACTATATGGTGACGAAAAAAAGTTCG
ATACAAAAAAGTTGTTTCCGCTGTTATTTGCCATATTGCTACTATTTGTG
CGGGTGTGGCTCTTGTTAGGTGTAAAGTCTGAGCTTTGAAGGAGGAGAGC
AGATTCGACAGTTTTGTCTTGCATGTGCTCCGGTAAACGCTCGTTACGTT
TCAGTGCTAGCTGCGAAAATTCGTCGTCTAAATCGAAGTTGGAAGAAGGA
GAGAAAACGTCCTTGGTtgtgttttggttttcaaatcTGTCTTCTTTAAT
GTTCAACTTTCCTGGTCGTGAATTCTCCGCATTGTATATAAAACGTAGCG
AATCTGGGTCACCCTGCCGTTTGATATCGAGAACAGTTTCACCTTTCGAA
ATACGTTTCGCACACAGATCCAGTATTTTGCGAGggtctttttcattttg
acatACGAAAACATACAAAGTAGCATTTGTCTGTTCGTTACATTTACGAC
AAATCAATGTTAAAACTTTCTTGTATTGAGTGCTGGATGAAATAAAAACG
AGTTCAGGAGTTTCGAAAGTTTCATTCAAAGAATCGTTGGTCGGTTTCCC
TGAATTGGGTGTGACGGTCAGTCCGATCTCATTAATTGAAAGACACAGAC
GTTTGGATTGGCTCAACGCGTTCATGGTTAAGAAACGTTGTTTAGTAACA
TCTTTGACAATGTCTTGGTAATCCTTTCCTTCTACAGCACTTAATGTTTC
TTCACTGAGGAAGGTGACTTGGAAAGCATCGTTTTCTTGCGGTATTCGAA
AAGTGGAAAGATCATCATCGTCATCGCTACCACAATGTTCGTCTTCTGAA
AAATCTTCCTTATCTGGTTGTGTGTTCAATTTTTTATGTTGAGAGTAACG
TCCTAAACCAAGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013178-exon-sc0000162-1491911889:51016..53372 | TCONS_00013178-exon-sc0000162-1491911889:51016..53372 | Clytia hemisphaerica | exon |
| TCONS_00013178-exon-sc0000162-1510915933:51016..53372 | TCONS_00013178-exon-sc0000162-1510915933:51016..53372 | Clytia hemisphaerica | exon |
| TCONS_00013178-exon-sc0000162-1575043694:51016..53372 | TCONS_00013178-exon-sc0000162-1575043694:51016..53372 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000162 | supercontig | sc0000162:51016..53372 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR011993 | PH_dom-like |
Blast
The following BLAST results are available for this feature:
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