TCONS_00013184 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013184
Unique NameTCONS_00013184
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2255

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013184 ID=TCONS_00013184|Name=TCONS_00013184|organism=Clytia hemisphaerica|type=transcript|length=2255bp
attttcttctcgtttcagtgaaaaaacaaaaaaaataaacaagaaaagAA
TAACAAACGAAATGGATTCTGACGATTCAGAAGAGCCACTCCACAATGTG
GTGGAAGGTGAGGATGCGGAGCCGCTCGGTGAAAAACCAATGAAATTGAA
AGTCTACAAACAACGCTGGTTCATTTTGTTTATCTTCTCCTGTGTATCCT
TTGCTAATGGTGTCCTCTACACGTGTATAGTTTCCATCAACGACATCATC
GCCAGATATTACCGAGTGAAAGAAGACCGGGTGGACTGGGCAGGAAATAT
CTTTCCTTTCATGTACATTTTTATGGCACTACCTTCAGCTtacatgatga
cgtcattaggACTACGAACTCTCGTCATCATCGGTTCTAGCTTAAACGCG
ATTGGTACATGTTTACATTTCGCTGGTGTTTTCGGGAATGGTTATCGCTT
CATCATGGGCGGTCAAGTGGCGGCCGCCCTCTCTTTTCCTACCATCTTAC
AAGTTCCCGTCCGCCTTTCAACAGTATGGTTCCCGGAGTATGAACACGCT
AAAGCTACCAGTATTGCTATGGTGGCTAATGTTTTCGGTCTGGGCATCGG
TTTTCTACAGCCATCCTACATGGTGCCCGATGTGGAAAGCAAAGAGGATA
TTTATGCCGGTTTATACGACTTGTACCTCACACATTTGATATTCTTGATC
GTCTGTTTGGGTTtggtttattcatttttcaaagagAAGCCGCCCTTACC
GCCCTCTTTTGCAGCGGCTGTCAGCAAGTTTCGAACGGAGGATGATGACA
GTGTAGAGAAAGAAGGGGAATCACCCACCATGATCCAATCTATCAAAGTG
CTGACCGTCAACAAGAATTTCCTGATCCTTACTCAAGCTTACGCTTTGTA
TTTTGGGTTATATCTTTTCTACGTGACATGTTTAAATGATATGGTCAGTC
ACTTAGTGGAAGAAATTTATATCGGATGGATGGGCTTTTCTGCAGATGTG
GCAGCCATCATTGGCATTCTTGTTTGTAGCGTCATCATTGATAAATTCCA
AGCTTACCAGATCTGTTCATTGGTTTTGACATTTGGTGTTCTGGTTTCGT
GGACGTTATTCGCTCTATCGGTAGTCCGTTGGAAATCCACTATCGCGTTA
TTTGTGACTTATGCAATGGTTTCCTTGTTTGGCGCACCTTTCTTCGTTGT
TGGGATCGAGTATACTGCCGAAGTCACTTATCCCATATCTGAAGGACTAT
CCAGTGCTATTATCTTGTTGCTAGGTAACTTATATGGGTTTCTGATGGTA
CTCTTTTTTGGTTCATGGATTGAGAAGGGACATTTGGGATTCGCGACGTA
TTTTGTAATCGGTGTATATGCGGTGTGTTTCATTTTGGTCTGCTTTATAC
GGCAAACGTTAAACCGTCACGACGCAGAGAGACATCATAAGAGACCTCAA
ACTACGAACGGAGAAGAAAACGATCCTCTTCTCATCTAGAAAGGTTGAGA
CTTACATTTACGCCTTTTCTTATCAAAGgttgactttgaaatttcatttt
caaattaatatatttttataacaaTAATTTTGATATGCAGACGAATAGAC
TTTCTTAATGTAGTTGAAGACCAAATTCCTCTTAGTGGATCAGAAAGCAT
GGCTAGGtttccatttcattttataCTACTAATTTCGTCGCTTAAAGTAA
ATTTATTGCAtactttttacatttttttcgatTAACATCACGTTCGTAAG
CGCACATGGCCTACCCGTACATGTATCATGGTAATTATTCAATATAATGC
TAACTGATCCGCTATGTAAAGGACTTTTTCATGCCAAGcatgaaattttt
attactcgttataattttataaaaccgacagcttttttactcaatttttg
gTACGTTATGACTAGGTTATATTTTTCTTGGCTCGTAAAAAGCTGAAACT
AAATATCGTTATTTCTAGACTTAATGTCGATAGGCTTGCTCTTTGACTAG
TTCCTTTGAGGAGCATTCGagatatattttgaaatgtacTTCAACAGAAT
TTTTCTCGTTTTCGGAGACTTCTCTTTTTCTCGATAAGCCAAAcagaaaa
aaagagttttttggacTGAAAGGAAAATAATCGAGTCTTGTTCTTCTGTA
TGAagtgaaaaatgtaaacaaacgaGCGAACATGAAAAGTTGTAAGTGTT
TTGAACGAAAATGAAAGCGACTTGTAGACGAAAAAGGATTTTAAAGATGG
TGGCA
Run BLAST on NCBI

protein sequence of TCONS_00013184-protein

>TCONS_00013184-protein ID=TCONS_00013184-protein|Name=TCONS_00013184-protein|organism=Clytia hemisphaerica|type=polypeptide|length=495bp
FSSRFSEKTKKINKKRITNEMDSDDSEEPLHNVVEGEDAEPLGEKPMKLK
VYKQRWFILFIFSCVSFANGVLYTCIVSINDIIARYYRVKEDRVDWAGNI
FPFMYIFMALPSAYMMTSLGLRTLVIIGSSLNAIGTCLHFAGVFGNGYRF
IMGGQVAAALSFPTILQVPVRLSTVWFPEYEHAKATSIAMVANVFGLGIG
FLQPSYMVPDVESKEDIYAGLYDLYLTHLIFLIVCLGLVYSFFKEKPPLP
PSFAAAVSKFRTEDDDSVEKEGESPTMIQSIKVLTVNKNFLILTQAYALY
FGLYLFYVTCLNDMVSHLVEEIYIGWMGFSADVAAIIGILVCSVIIDKFQ
AYQICSLVLTFGVLVSWTLFALSVVRWKSTIALFVTYAMVSLFGAPFFVV
GIEYTAEVTYPISEGLSSAIILLLGNLYGFLMVLFFGSWIEKGHLGFATY
FVIGVYAVCFILVCFIRQTLNRHDAERHHKRPQTTNGEENDPLLI
Run BLAST on NCBI

transcript from alignment at sc0000162:201616..203870

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013184 ID=TCONS_00013184|Name=TCONS_00013184|organism=Clytia hemisphaerica|type=transcript|length=2255bp|location=Sequence derived from alignment at sc0000162:201616..203870 (Clytia hemisphaerica)
TGCCACCATCTTTAAAATCCTTTTTCGTCTACAAGTCGCTTTCATTTTCG
TTCAAAACACTTACAACTTTTCATGTTCGCtcgtttgtttacatttttca
ctTCATACAGAAGAACAAGACTCGATTATTTTCCTTTCAgtccaaaaaac
tctttttttctgTTTGGCTTATCGAGAAAAAGAGAAGTCTCCGAAAACGA
GAAAAATTCTGTTGAAgtacatttcaaaatatatctCGAATGCTCCTCAA
AGGAACTAGTCAAAGAGCAAGCCTATCGACATTAAGTCTAGAAATAACGA
TATTTAGTTTCAGCTTTTTACGAGCCAAGAAAAATATAACCTAGTCATAA
CGTAccaaaaattgagtaaaaaagctgtcggttttataaaattataacga
gtaataaaaatttcatgCTTGGCATGAAAAAGTCCTTTACATAGCGGATC
AGTTAGCATTATATTGAATAATTACCATGATACATGTACGGGTAGGCCAT
GTGCGCTTACGAACGTGATGTTAatcgaaaaaaatgtaaaaagtaTGCAA
TAAATTTACTTTAAGCGACGAAATTAGTAGtataaaatgaaatggaaaCC
TAGCCATGCTTTCTGATCCACTAAGAGGAATTTGGTCTTCAACTACATTA
AGAAAGTCTATTCGTCTGCATATCAAAATTAttgttataaaaatatatta
atttgaaaatgaaatttcaaagtcaacCTTTGATAAGAAAAGGCGTAAAT
GTAAGTCTCAACCTTTCTAGATGAGAAGAGGATCGTTTTCTTCTCCGTTC
GTAGTTTGAGGTCTCTTATGATGTCTCTCTGCGTCGTGACGGTTTAACGT
TTGCCGTATAAAGCAGACCAAAATGAAACACACCGCATATACACCGATTA
CAAAATACGTCGCGAATCCCAAATGTCCCTTCTCAATCCATGAACCAAAA
AAGAGTACCATCAGAAACCCATATAAGTTACCTAGCAACAAGATAATAGC
ACTGGATAGTCCTTCAGATATGGGATAAGTGACTTCGGCAGTATACTCGA
TCCCAACAACGAAGAAAGGTGCGCCAAACAAGGAAACCATTGCATAAGTC
ACAAATAACGCGATAGTGGATTTCCAACGGACTACCGATAGAGCGAATAA
CGTCCACGAAACCAGAACACCAAATGTCAAAACCAATGAACAGATCTGGT
AAGCTTGGAATTTATCAATGATGACGCTACAAACAAGAATGCCAATGATG
GCTGCCACATCTGCAGAAAAGCCCATCCATCCGATATAAATTTCTTCCAC
TAAGTGACTGACCATATCATTTAAACATGTCACGTAGAAAAGATATAACC
CAAAATACAAAGCGTAAGCTTGAGTAAGGATCAGGAAATTCTTGTTGACG
GTCAGCACTTTGATAGATTGGATCATGGTGGGTGATTCCCCTTCTTTCTC
TACACTGTCATCATCCTCCGTTCGAAACTTGCTGACAGCCGCTGCAAAAG
AGGGCGGTAAGGGCGGCTTctctttgaaaaatgaataaaccaAACCCAAA
CAGACGATCAAGAATATCAAATGTGTGAGGTACAAGTCGTATAAACCGGC
ATAAATATCCTCTTTGCTTTCCACATCGGGCACCATGTAGGATGGCTGTA
GAAAACCGATGCCCAGACCGAAAACATTAGCCACCATAGCAATACTGGTA
GCTTTAGCGTGTTCATACTCCGGGAACCATACTGTTGAAAGGCGGACGGG
AACTTGTAAGATGGTAGGAAAAGAGAGGGCGGCCGCCACTTGACCGCCCA
TGATGAAGCGATAACCATTCCCGAAAACACCAGCGAAATGTAAACATGTA
CCAATCGCGTTTAAGCTAGAACCGATGATGACGAGAGTTCGTAGTcctaa
tgacgtcatcatgtaAGCTGAAGGTAGTGCCATAAAAATGTACATGAAAG
GAAAGATATTTCCTGCCCAGTCCACCCGGTCTTCTTTCACTCGGTAATAT
CTGGCGATGATGTCGTTGATGGAAACTATACACGTGTAGAGGACACCATT
AGCAAAGGATACACAGGAGAAGATAAACAAAATGAACCAGCGTTGTTTGT
AGACTTTCAATTTCATTGGTTTTTCACCGAGCGGCTCCGCATCCTCACCT
TCCACCACATTGTGGAGTGGCTCTTCTGAATCGTCAGAATCCATTTCGTT
TGTTATTcttttcttgtttattttttttgttttttcactgaaacgagaag
aaaat

Coding sequence (CDS) from alignment at sc0000162:201616..203870

>TCONS_00013184 ID=TCONS_00013184|Name=TCONS_00013184|organism=Clytia hemisphaerica|type=CDS|length=1488bp|location=Sequence derived from alignment at sc0000162:201616..203870 (Clytia hemisphaerica)
CTAGATGAGAAGAGGATCGTTTTCTTCTCCGTTCGTAGTTTGAGGTCTCT
TATGATGTCTCTCTGCGTCGTGACGGTTTAACGTTTGCCGTATAAAGCAG
ACCAAAATGAAACACACCGCATATACACCGATTACAAAATACGTCGCGAA
TCCCAAATGTCCCTTCTCAATCCATGAACCAAAAAAGAGTACCATCAGAA
ACCCATATAAGTTACCTAGCAACAAGATAATAGCACTGGATAGTCCTTCA
GATATGGGATAAGTGACTTCGGCAGTATACTCGATCCCAACAACGAAGAA
AGGTGCGCCAAACAAGGAAACCATTGCATAAGTCACAAATAACGCGATAG
TGGATTTCCAACGGACTACCGATAGAGCGAATAACGTCCACGAAACCAGA
ACACCAAATGTCAAAACCAATGAACAGATCTGGTAAGCTTGGAATTTATC
AATGATGACGCTACAAACAAGAATGCCAATGATGGCTGCCACATCTGCAG
AAAAGCCCATCCATCCGATATAAATTTCTTCCACTAAGTGACTGACCATA
TCATTTAAACATGTCACGTAGAAAAGATATAACCCAAAATACAAAGCGTA
AGCTTGAGTAAGGATCAGGAAATTCTTGTTGACGGTCAGCACTTTGATAG
ATTGGATCATGGTGGGTGATTCCCCTTCTTTCTCTACACTGTCATCATCC
TCCGTTCGAAACTTGCTGACAGCCGCTGCAAAAGAGGGCGGTAAGGGCGG
CTTctctttgaaaaatgaataaaccaAACCCAAACAGACGATCAAGAATA
TCAAATGTGTGAGGTACAAGTCGTATAAACCGGCATAAATATCCTCTTTG
CTTTCCACATCGGGCACCATGTAGGATGGCTGTAGAAAACCGATGCCCAG
ACCGAAAACATTAGCCACCATAGCAATACTGGTAGCTTTAGCGTGTTCAT
ACTCCGGGAACCATACTGTTGAAAGGCGGACGGGAACTTGTAAGATGGTA
GGAAAAGAGAGGGCGGCCGCCACTTGACCGCCCATGATGAAGCGATAACC
ATTCCCGAAAACACCAGCGAAATGTAAACATGTACCAATCGCGTTTAAGC
TAGAACCGATGATGACGAGAGTTCGTAGTcctaatgacgtcatcatgtaA
GCTGAAGGTAGTGCCATAAAAATGTACATGAAAGGAAAGATATTTCCTGC
CCAGTCCACCCGGTCTTCTTTCACTCGGTAATATCTGGCGATGATGTCGT
TGATGGAAACTATACACGTGTAGAGGACACCATTAGCAAAGGATACACAG
GAGAAGATAAACAAAATGAACCAGCGTTGTTTGTAGACTTTCAATTTCAT
TGGTTTTTCACCGAGCGGCTCCGCATCCTCACCTTCCACCACATTGTGGA
GTGGCTCTTCTGAATCGTCAGAATCCATTTCGTTTGTTATTcttttcttg
tttattttttttgttttttcactgaaacgagaagaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007365XLOC_007365Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013184-proteinTCONS_00013184-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013184-exon-sc0000162-1491911889:201616..203870TCONS_00013184-exon-sc0000162-1491911889:201616..203870Clytia hemisphaericaexon
TCONS_00013184-exon-sc0000162-1510915933:201616..203870TCONS_00013184-exon-sc0000162-1510915933:201616..203870Clytia hemisphaericaexon
TCONS_00013184-exon-sc0000162-1575043694:201616..203870TCONS_00013184-exon-sc0000162-1575043694:201616..203870Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000162supercontigsc0000162:201616..203870 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.6352	10.7881	4.88869	3.80321	12.4637	9.03592	13.2868	13.2738	16.4094	17.1945	14.8448	12.1027	13.0085	10.8866	14.4838	14.9305	13.4987	13.6623	10.3408	14.2736	10.6795	11.3341	16.0247	16.2136	11.0214	12.2788	19.2591	13.1443	23.5187	23.0207
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011701MFS
IPR020846MFS_dom
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
Blast
[Close]
BLAST of TCONS_00013184 vs. Swiss-Prot (Human)
Match: FLVC2 (Feline leukemia virus subgroup C receptor-related protein 2 OS=Homo sapiens GN=FLVCR2 PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 3.036e-48
Identity = 129/456 (28.29%), Postives = 221/456 (48.46%), Query Frame = 2 
Query:  116 AEPLGEKPMKL---KVYKQRWFILFIFSCVSFANGVLYTCIVSINDIIARYYRVKEDRVDWAGNIFPFMYIFMALPSAYMMTSLGLRTLVIIGSSLNAIGTCLHFAGVFGNGYRFIMGGQVAAALSFPTILQVPVRLSTVWFPEYEHAKATSIAMVANVFGLGIGFLQPSYMVPDVESKEDIYAGLYDLYLTHLIFLIV------CLGLVYSFFKEKPPLPPSFAAAVSKFRTEDDDSVEKEGESPTMIQSIKVLTVNKNFLILTQXXXXXXXXXXXXVTCLNDMV--SHLVEEIYIGWMGFSADVAAIIGILVCSVIIDKFQAYQICSLVLTFGVLVSWTLFALSVVRWKSTIALFVTYAMVSLFGAPFFVVGIEYTAEVTYPISEGLSSAIILLLGNLYGFLMVLFFGSWIEK-----GHLGFATYFVIGVYAVCFILVCFIRQTLNRHDAERH 1435
            A P    P  L   KV ++RW ++ +FSC S  N   +    SIN+I   +Y V    +DW    +   YI + LP A+++   GLRT+ + GS+LN +G  +    +  + +   + GQ+  +++   IL +P R+++VWF   E + A S+A+  N  G+ IGFL P  +VP++E ++++       Y   ++F I+       L LV   FKEKP  PPS A ++S   T  D S          + SI  L  N NF++L   Y L  G +    T LN MV   +  EE+  G +G +  +A ++G ++  + +D+ + Y+  +LV+    LV   ++  + +       +F+T   +  F   +  +G E+  E+TYP SEG+SS ++ +   ++G +  +  G  I+      G++    +  +G     FI     RQ  N+   E  
Sbjct:   65 AHPSSSGPEDLSVIKVSRRRWAVVLVFSCYSMCNSFQWIQYGSINNIFMHFYGVSAFAIDWLSMCYMLTYIPLLLPVAWLLEKFGLRTIALTGSALNCLGAWVKLGSLKPHLFPVTVVGQLICSVAQVFILGMPSRIASVWFGANEVSTACSVAVFGNQLGIAIGFLVPPVLVPNIEDRDEL------AYHISIMFYIIGGVATLLLILVIIVFKEKPKYPPSRAQSLSYALTSPDAS---------YLGSIARLFKNLNFVLLVITYGLNAGAFYALSTLLNRMVIWHYPGEEVNAGRIGLTIVIAGMLGAVISGIWLDRSKTYKETTLVVYIMTLVGMVVYTFT-LNLGHLWVVFITAGTMGFFMTGYLPLGFEFAVELTYPESEGISSGLLNISAQVFGIIFTISQGQIIDNYGTKPGNIFLCVFLTLGAALTAFIKADLRRQKANKETLENK 504
The following BLAST results are available for this feature:
BLAST of TCONS_00013184 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FLVC23.036e-4828.29Feline leukemia virus subgroup C receptor-related ... [more]
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