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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013310 ID=TCONS_00013310|Name=TCONS_00013310|organism=Clytia hemisphaerica|type=transcript|length=2692bp
GTGAAATTCTCTGTCGTTTTTAAGCTAAAtggttttattcaaaatgaacT
TTATGGGTGTTGAATAATTAACTTACAAAAAGCTTCCAAAAACGGAAGTT
TCAATttggaaaaacgaaaaaactgcaatgtcttccgaaaaaagctttaa
aaagcttCTGGATATGGAAGTCTGAAAAAGCTTCCGTATCTGGATGTCTA
TTAGACTGCCAAGAATTGTTACGGTGCCACCCGAAGCCTCGAGGTCCAGT
TTTTGTCTGAAACCCCCACAACACAAAATTTCCTAAGGCAGCAATCGAAA
AATTATCTTGTTCCCGTCACagagagcaaaaaaatcaatgcGGGCAGATG
GGCGGTCAGTAAAAAAGCCAGGTTTTTTTTCAACACCTGGCATCAttttt
aaaagccatttttaGTTCAGTGATACCCAATCATCCAGTGTGAAAGGTTT
CATCCAGTTTCGAAGGCTTTTTTGTATAAATAGAAGTCTACGCCAAAAAG
TTCCGCTCGCGGAATGGCATCCGCTGCCAGGGAGGTTTTGCGAACCCGGG
GCTGCGAATTTCCATCACGTGTTCAATATCACGGCTTTTGATTGCATCAT
CTTTTCCAAAAATCCCAAAAGATCTCGATAATCGATAATCccaaaaaatc
ccaaaaaatctcaaaaaatcttTCGATCTCGTACACTTTTTtggaagtga
tttacccctcgacaAATAATACTTCAATTTCAACGCTCAAGAAGCAGACA
AGGTTTGTTTTATCGACCTCTTCgtcgagaatgtaaatcaatctgctcaa
gcagacaaggtttgttttatcgacctcttcgtcgagaatgtaaatcaatc
tgctcaagcagacaaggtttgttttatcgacctctttgtcgagaatgtaa
atcaatctgctcaagcagacaaggtttgtTTTATCGACCTCTTTGTGTTC
TCTCATAGTTAAATAACCATAATACTCCTGAAAGCAACTGAAAGTGGATT
AAcgaattttggtttttgtgGCATTTTATCTATTTTGCCTGTTTCCAAAA
GCTTTAAAAGTTCTTTAGGAACAAATTCTGACTCCGTAGTTGTGGactta
ttattttttaggtCACAAGGCGTTGGTTCGAAGAgaaaaggaattttata
acCATCTTTTACGATAGATAGTATGGATTCACTAGCTCCTATGTGCTCCC
AATATTCGAGGTTCTGTCTCAAACGGCCTTTAGTACTAATCAAAGAGGAA
TCTAGAATTAAAGACTTATCTGTTTGAGTGTTGATATCGACATAGCATTG
ATACGACCGATGTCCTTCTCTACAGCAGCGGAAACAGGCGTTGCTCATTG
GGCGCGTTTGTTGTGAATTGAAAGGTTGTCGATGATTCACTTGACGATGC
TGTTGAAGGTAGTTCAGTTGAAACGTCCAATTTGCGAtttgttgttgatt
ttgaaaGTTATTTGGAGGGTTTGGTCTTCTCTTAGACTTGATATCAGCTG
TTTTACGAGCTGCTCTTTCTTTTGCTGCAGTTATGTTACGTAGATGGGTC
TCATCCTCTGCGCATTCTCGAAGCTTCTGATACTCGTTTGCAGTCGACCA
GCTTTTCCCTCTTCTTTGTACTTTCCAAAATCCGATCCAGATGCTTTACT
GCTTTAGAGGTCTTTTTATCTTCAGTGGCTTGAATGGCTTCTTTCGCTTG
GTTTTCGATTTCTAGTGTAAAGACGAATTGATTCTTATTCCCTTCTGATT
TAAAGGAAGGAATGTTTTGAAGCTGCGTCCTTGGTTTTTTGGCCTTGCTT
AAGTCGTTTTAATATCCTCAAGTTAGTCATCTAAATAAGAAATAATTGAC
TTAGCTTGTCGATGATCATAAATTTTCGTTTGTTGATTTGCGTTTTCAGA
TGATGAACTTGATGTGTGTCTTCCCATCTCGTGTGTCATGAGGGAAACAC
AtaatttttaagtgctttaagGGGGGGTTTCAGGAGGTACCCGATTCAGC
AATTCCGTCAAatctttctccaatttccgtcaaaccgtctaaaATTCAAC
CGAAATTCCGCCAccgaaaatttctttgaaattcaagatttttgtcataa
attccgcgaattttgaatattttttgccaattccgaaattccgcaaaacc
ttttgctaaattccgtttttccgcactaaaattgtcaaattttccgtctc
cgtcggagaacccaatttccgtaattccgtctaaattttcgccgaatccc
gccactccgtccgaaaaaagggccgattccgctcctccacCAAGCATGAA
TCCCCTTTAACCATAGACATATGCTTTAACTTAGGGTTAGAaattagagt
tttaactcttgaGTTTTGATATGAGACTTGGGCTTGGGGGCTCTTGATTA
TAAGCGCAGCCCacaattaggcctttgaaatcgaaCCCATACAGTGCAGG
GAAGATTTAGCAAAAACACCAAGGATGAATTTAAAAGCAAACAGCTGCTC
ATCAAGGTTTAATTCGTTTCTATTCTTACTATATAATGATAGTCATGGGT
atttaatttagaaaatgattAATTGCTTTTATGTTATATACTATTATGAC
TTAATTATTCTTTTATCTTCAACCTTTGTTTAATGTATTCACATATGATA
TTTATgattttgtaaactttttaaaaattgaacattttgcTT Run BLAST on NCBI transcript from alignment at sc0000164:384677..387425- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013310 ID=TCONS_00013310|Name=TCONS_00013310|organism=Clytia hemisphaerica|type=transcript|length=2749bp|location=Sequence derived from alignment at sc0000164:384677..387425- (Clytia hemisphaerica)
GTGAAATTCTCTGTCGTTTTTAAGCTAAATGGTTTTATTCAAAATGAACT
TTATGGGTGTTGAATAATTAACTTACAAAAAGCTTCCAAAAACGGAAGTT
TCAATTTGGAAAAACGAAAAAACTGCAATGTCTTCCGAAAAAAGCTTTAA
AAAGCTTCTGGATATGGAAGTCTGAAAAAGCTTCCGTATCTGGATGTCTA
TTAGACTGCCAAGAATTGTTACGGTGCCACCCGAAGCCTCGAGGTCCAGT
TTTTGTCTGAAACCCCCACAACACAAAATTTCCTAAGGCAGCAATCGAAA
AATTATCTTGTTCCCGTCACAGAGAGCAAAAAAATCAATGCGGGCAGATG
GGCGGTCAGTAAAAAAGCCAGGTTTTTTTTCAACACCTGGCATCATTTTT
AAAAGCCATTTTTAGTTCAGTGATACCCAATCATCCAGTGTGAAAGGTTT
CATCCAGTTTCGAAGGCTTTTTTGTATAAATAGAAGTCTACGCCAAAAAG
TTCCGCTCGCGGAATGGCATCCGCTGCCAGGGAGGTTTTGCGAACCCGGG
GCTGCGAATTTCCATCACGTGTTCAATATCACGGCTTTTGATTGCATCAT
CTTTTCCAAAAATCCCAAAAGATCTCGATAATCGATAATCCCAAAAAATC
CCAAAAAATCTCAAAAAATCTTTCGATCTCGTACACTTTTTTGGAAGTGA
TTTACCCCTCGACAAATAATACTTCAATTTCAACGCTCAAGAAGCAGACA
AGGTTTGTTTTATCGACCTCTTCGTCGAGAATGTAAATCAATCTGCTCAA
GCAGACAAGGTTTGTTTTATCGACCTCTTCGTCGAGAATGTAAATCAATC
TGCTCAAGCAGACAAGGTTTGTTTTATCGACCTCTTTGTCGAGAATGTAA
ATCAATCTGCTCAAGCAGACAAGGTTTGTTTTATCGACCTCTTTGTGTTC
TCTCATAGTTAAATAACCATAATACTCCTGAAAGCAACTGAAAGTGGATT
AACGAATTTTGGTTTTTGTGGCATTTTATCTATTTTGCCTGTTTCCAAAA
GCTTTAAAAGTTCTTTAGGAACAAATTCTGACTCCGTAGTTGTGGACTTA
TTATTTTTTAGGTCACAAGGCGTTGGTTCGAAGAGAAAAGGAATTTTATA
ACCATCTTTTACGATAGATAGTATGGATTCACTAGCTCCTATGTGCTCCC
AATATTCGAGGTTCTGTCTCAAACGGCCTTTAGTACTAATCAAAGAGGAA
TCTAGAATTAAAGACTTATCTGTTTGAGTGTTGATATCGACATAGCATTG
ATACGACCGATGTCCTTCTCTACAGCAGCGGAAACAGGCGTTGCTCNCAT
AGCATTGATACGACCGATGTCCTTCTCTACAGCAGCGCAAACAGGCGTTG
CTCATTGGGCGCGTTTGTTGTGAATTGAAAGGTTGTCGATGATTCACTTG
ACGATGCTGTTGAAGGTAGTTCAGTTGAAACGTCCAATTTGCGATTTGTT
GTTGATTTTGAAAGTTATTTGGAGGGTTTGGTCTTCTCTTAGACTTGATA
TCAGCTGTTTTACGAGCTGCTCTTTCTTTTGCTGCAGTTATGTTACGTAG
ATGGGTCTCATCCTCTGCGCATTCTCGAAGCTTCTGATACTCGTTTGCAG
TCGACCAGCTTTTCCCTCTTCTTTGTACTTTCCAAAATCCGATCCAGATG
CTTTACTGCTTTAGAGGTCTTTTTATCTTCAGTGGCTTGAATGGCTTCTT
TCGCTTGGTTTTCGATTTCTAGTGTAAAGACGAATTGATTCTTATTCCCT
TCTGATTTAAAGGAAGGAATGTTTTGAAGCTGCGTCCTTGGTTTTTTGGC
CTTGCTTAAGTCGTTTTAATATCCTCAAGTTAGTCATCTAAATAAGAAAT
AATTGACTTAGCTTGTCGATGATCATAAATTTTCGTTTGTTGATTTGCGT
TTTCAGATGATGAACTTGATGTGTGTCTTCCCATCTCGTGTGTCATGAGG
GAAACACATAATTTTTAAGTGCTTTAAGGGGGGGTTTCAGGAGGTACCCG
ATTCAGCAATTCCGTCAAATCTTTCTCCAATTTCCGTCAAACCGTCTAAA
ATTCAACCGAAATTCCGCCACCGAAAATTTCTTTGAAATTCAAGATTTTT
GTCATAAATTCCGCGAATTTTGAATATTTTTTGCCAATTCCGAAATTCCG
CAAAACCTTTTGCTAAATTCCGTTTTTCCGCACTAAAATTGTCAAATTTT
CCGTCTCCGTCGGAGAACCCAATTTCCGTAATTCCGTCTAAATTTTCGCC
GAATCCCGCCACTCCGTCCGAAAAAAGGGCCGATTCCGCTCCTCCACCAA
GCATGAATCCCCTTTAACCATAGACATATGCTTTAACTTAGGGTTAGAAA
TTAGAGTTTTAACTCTTGAGTTTTGATATGAGACTTGGGCTTGGGGGCTC
TTGATTATAAGCGCAGCCCACAATTAGGCCTTTGAAATCGAACCCATACA
GTGCAGGGAAGATTTAGCAAAAACACCAAGGATGAATTTAAAAGCAAACA
GCTGCTCATCAAGGTTTAATTCGTTTCTATTCTTACTATATAATGATAGT
CATGGGTATTTAATTTAGAAAATGATTAATTGCTTTTATGTTATATACTA
TTATGACTTAATTATTCTTTTATCTTCAACCTTTGTTTAATGTATTCACA
TATGATATTTATGATTTTGTAAACTTTTTAAAAATTGAACATTTTGCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013310-exon-sc0000164-1575043694:386089..387425 | TCONS_00013310-exon-sc0000164-1575043694:386089..387425 | Clytia hemisphaerica | exon |
| TCONS_00013310-exon-sc0000164-1575043694:384677..386031 | TCONS_00013310-exon-sc0000164-1575043694:384677..386031 | Clytia hemisphaerica | exon |
| TCONS_00013310-exon-sc0000164-1510915933:386089..387425 | TCONS_00013310-exon-sc0000164-1510915933:386089..387425 | Clytia hemisphaerica | exon |
| TCONS_00013310-exon-sc0000164-1510915933:384677..386031 | TCONS_00013310-exon-sc0000164-1510915933:384677..386031 | Clytia hemisphaerica | exon |
| TCONS_00013310-exon-sc0000164-1491911889:386089..387425 | TCONS_00013310-exon-sc0000164-1491911889:386089..387425 | Clytia hemisphaerica | exon |
| TCONS_00013310-exon-sc0000164-1491911889:384677..386031 | TCONS_00013310-exon-sc0000164-1491911889:384677..386031 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000164 | supercontig | sc0000164:384677..387425 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001878 | Znf_CCHC |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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