TCONS_00013408 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013408
Unique NameTCONS_00013408
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2860

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013408 ID=TCONS_00013408|Name=TCONS_00013408|organism=Clytia hemisphaerica|type=transcript|length=2860bp
caactggCAGACTGGGGAAGCGAAACTCGTCAGCTGATCAGGGCCAAAAG
AATATGTAAAAGGGACTTCCCCTTTATTCTTAAGAACTATTAAGTAAATA
ATCTATTAAGTCCAGGAAATGTAAATATAAGAGGAGACTTACTTGTTACT
TACTTGTGTGGTTGTTGGAGCATCCTGCTTCAGatTTAACTGACATAAAA
ATGGCGCAAATTGGCGAGCTCAGCTTAGCTCCTACTCGTGCTCCTGTATG
CAGTGGAAGTAGTTGTGAAACAATTGACGCGCTTCACAAGACGTTTTCCT
CATTATCATTGATTGGAAGTTTTGTTGTGTTGGTCTTAATTCTCATCCTA
AAAGAATATCACATGGATGCTCAAAAGATGATCTTATTCATGGTCTTGTC
AGCTTTCATTGATAGTATTGCTTATTTAATGGGTGACGCTGAAACAACAC
ATGGTGCAACCTGTGAAGCTCAATCATTTCTCATGCAATATTTTGATTGG
GCTACGTTATTATGGGTGACGATGATCacaacaaatttgattttaatcat
aaaaaataaacagtcacctaaatattattatatttaCCATGCCGTTGTTT
GGCTTGGTGCTTTGTTTTTTGCTATTGTCCCTTTCTTTGAAAACACATAC
GGTCATGCAGGACTTTGGTGTTGGATCAAGAGAGAATATACAGGATATAG
GTTTGGAACATGGTTCGGACCTCTATTTTTCATATGTTTTGGAATGTGTA
TCACTCTTGGCTATGTCACCTATTCAGTATATCAGGCTACTCAAGCCCAA
ACTGGAGTCTCTGTTGCAACCGAAAATATCAACAGAAGCTATCGAAATGA
ATTGAAACGACTTGCTTTTTATCCATTGGTTTATATCATTTTGAATATTC
CAACCTTAGCTTATCGAATCGAAGATGCTTCACATCCTAATAAGAAACCC
AATTATGGCATCTTGGTTGTATCTTCAATATTTGGGCCTTCAGTAGGAGC
TGCTAATGCTATCATCTTTGCTACAATCAATTTAGGTTCGATTCGGAACC
TAACATGGCCAATGATCAGAAATAATGTAATATTGTTGTTCAAACGTGAG
ACGCAAACGCAAATCGAACATAATGTTGTTCTTGAAGAAGGTCCACAAAC
AAGTGATTCATCAGAGCAATATCAACCGAtgccttgatttttttttggca
aaatctaATTCAGAACAGTACAGCTTCTGGTTACACGAAAtgttgttctt
atgaaaaaggtCCAGAATCAACTGAAGCCAGTAGGCGATATCAACTGATA
CCTTGATTTGCTCTGATAAAAACTGGTGATGAACAGTATCTACACTGAAA
TGACAGTGTAATCTTAAGATTTATATTATAAAGCTataatcaatatattt
tataattataataaaGGGTAGTCATAGTCAGCAAAACTCTATTGAAGTTA
GAAGTCTATTGAAGTTAGCTCTAGAAACGGTGAATTAGCCCGATTTTCTA
CTGAAGGTCTTTCTGATCTTTTTTTCGGACAATAATTGGAAAACTATTGC
CCactaaaaattttgtttcattataagcattttgtttatTTGGCTTATCT
GATAATGTTTagtaataaggtccgggggttggaaaattttcgaaaaatta
acaagcgggaggccgtttatttggaacctaggACTACcatatttcataaa
atatatCATTTCTGATCATTTTGGTATTCTAACTTTCGCTTTCAAACTTT
CGCTTTCAAACTTACAAAAGTACGAAAAGAAAAAGACAGGAATTTTTAAA
TGAGAGTAAAATATAAAGtatgacatttttttaaaaatcgaagaaaattt
ttcaagtaGGTCCTTCTAAGAATCAACTATTCAGCAAAAAtcggtctctc
taagggtcggttttcggaagtcccgtccgcacatacccctcatccacCAA
ACCTAGTACTCCCCCGGACATCATTCCATTTCATAAACAATGAAAAGACA
ATACTTCGCTTCCACTGtaagggacaagctggagtttttacaagctctcg
tttgatttggttggtcgttaacctgtaataaaacaattttgttacttttt
ctaaagaacgcgtcatctctattacttcaaataaccaatcaattagtgaa
gtctcttAAAAAAACTCCAGCCCATCCCCACTGTAACGGGTATGCAGGTT
TATTATTTGACTTGTCACATGTTAACAATCTTAATATTAATAGACAAGTG
TCGCTTAGCAATGCACTTTAAGTATTTAATTCAGGACTCAAAACGTTTAT
AATTTCCTCTTATAATGATATATTTATTAACATGCAATACGGACCACTCT
TTGAAAGGATCAACCGATTTGATATCTATAGAGTCAAATTAAACTTTCTA
GACATGAGATTTTTATCCTAAAAGGTTAAGAAATGGACCAAAACTATCCA
TAAACCCTGCGTTATGTTTTCCTTTTATGCTTTGAAACCATCTTTTTATC
CTTGTGCTTTATCCAATTTGGAAAAGCACATTTTCGCACTGATTTATACC
CCTAGAAGttttttatttccaaatttGCTTGTAGATATTCTTCCACtgca
ttttttattatttataaaataaaaatttttttttataaaactcggtataa
atattttcttgcatttttttatattttcatttctagatAATTATtgcatt
gattgattgattgattgattgattgattgattgattgattgattgattga
ttgattgattgattgattagcATATTATTTCATATTATCCACGATTTATA
TTAAATTGAAAAtgtgtatttaaaaaataatttttcagttaatCGGTAAT
AATAAGGCag
Run BLAST on NCBI

transcript from alignment at sc0000167:54013..58063-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013408 ID=TCONS_00013408|Name=TCONS_00013408|organism=Clytia hemisphaerica|type=transcript|length=4051bp|location=Sequence derived from alignment at sc0000167:54013..58063- (Clytia hemisphaerica)
CAACTGGCAGACTGGGGAAGCGAAACTCGTCAGCTGATCAGGGCCAAAAG
AATATGTAAAAGGGACTTCCCCTTTATTCTTAAGAACTATTAAGTAAATA
ATCTATTAAGTCCAGGAAATGTAAATATAAGAGGAGACTTACTTGTTACT
TACTTGTGTGGTTGTTGGAGCATCCTGCTTCAGGTAAGGTTCTTGGTGAA
CCACGCCTCTGTGTGATCAATCTGTCGAGAGAAAAAGAATCTCAGCAGAT
ATTTTTCATGTCAATTATTGAATNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NAGTTCTTCTTTGCATTGTTTGAGAAAGGTTGCAGGGAAACCATCGGGAC
CTGGTGCTGCAGTTTGGGACAGATCGTTGATTGCTTTTATTAAATCATCT
TCTGACAAGTACAGAAGCAAGAAGAGAGTGAAGAACGAGCTCTGAAGACT
CATATATTGTTTTATAAAGTCGCAGTCAGCAGCAGCGAATGCAATGCACC
TTCTTGAAATGTCAGATGCAAGGGTCACTAGGACTAGAAGGTGGGTGGGC
AGATTGACTTGGGAGGGACACAGAGACAGAGTTGTTTTCATTTTATTAGG
TATTTATGATTACTTTTTTTTTCAATATCATGATAATCAATAATATAATG
TATAAGTATAGTCCGGTGTTTTGTCTGGTGCCAAAAGTATCCCTCTCAGC
CACACCAGATCAGAAACCTTTTGTTTGGTGTTATAGTCCAGTGTTAATTT
TTCGAAGTTCTGGATACTGTGTGTTTCAAAATAATGCTCACCGGACTCAA
GTCCACTGTTGCAGAGGTGCCAACTCTAAAGTAGTGCTGAAAAACACTTT
TCAAAACACTTTTCAAAGAGAGAAACTTTTTTGTGGCGCACCCGGTAGAA
AGTTTACACACAGCCTAAATCTGACCTTCAGACCAGTTCAGACCGATAAT
TCCTGAAAAATTCTTATAAGAGAAATGTGCATTTACAATACAGTAGCTTC
AAACTCTTAAAGAGAAATATTAATAAAGATAATTCTCATACATAATTGTA
TATGTGAGTATTATCTTCTTTATAGTGGAGGTAAACTGTTTTTCGGTCGT
GTTGTTTTTTGTAATCTTTTAACTTTTTAAGCAGACTTACAGTACCTGTT
AAAATATCAAATTTCTTTTGATAGATTTAACTGACATAAAAATGGCGCAA
ATTGGCGAGCTCAGCTTAGCTCCTACTCGTGCTCCTGTATGCAGTGGAAG
TAGTTGTGAAACAATTGACGCGCTTCACAAGACGTTTTCCTCATTATCAT
TGATTGGAAGTTTTGTTGTGTTGGTCTTAATTCTCATCCTAAAAGAATAT
CACATGGATGCTCAAAAGATGATCTTATTCATGGTCTTGTCAGCTTTCAT
TGATAGTATTGCTTATTTAATGGGTGACGCTGAAACAACACATGGTGCAA
CCTGTGAAGCTCAATCATTTCTCATGCAATATTTTGATTGGGCTACGTTA
TTATGGGTGACGATGATCACAACAAATTTGATTTTAATCATAAAAAATAA
ACAGTCACCTAAATATTATTATATTTACCATGCCGTTGTTTGGCTTGGTG
CTTTGTTTTTTGCTATTGTCCCTTTCTTTGAAAACACATACGGTCATGCA
GGACTTTGGTGTTGGATCAAGAGAGAATATACAGGATATAGGTTTGGAAC
ATGGTTCGGACCTCTATTTTTCATATGTTTTGGAATGTGTATCACTCTTG
GCTATGTCACCTATTCAGTATATCAGGCTACTCAAGCCCAAACTGGAGTC
TCTGTTGCAACCGAAAATATCAACAGAAGCTATCGAAATGAATTGAAACG
ACTTGCTTTTTATCCATTGGTTTATATCATTTTGAATATTCCAACCTTAG
CTTATCGAATCGAAGATGCTTCACATCCTAATAAGAAACCCAATTATGGC
ATCTTGGTTGTATCTTCAATATTTGGGCCTTCAGTAGGAGCTGCTAATGC
TATCATCTTTGCTACAATCAATTTAGGTTCGATTCGGAACCTAACATGGC
CAATGATCAGAAATAATGTAATATTGTTGTTCAAACGTGAGACGCAAACG
CAAATCGAACATAATGTTGTTCTTGAAGAAGGTCCACAAACAAGTGATTC
ATCAGAGCAATATCAACCGATGCCTTGATTTTTTTTTGGCAAAATCTAAT
TCAGAACAGTACAGCTTCTGGTTACACGAAATGTTGTTCTTATGAAAAAG
GTCCAGAATCAACTGAAGCCAGTAGGCGATATCAACTGATACCTTGATTT
GCTCTGATAAAAACTGGTGATGAACAGTATCTACACTGAAATGACAGTGT
AATCTTAAGATTTATATTATAAAGCTATAATCAATATATTTTATAATTAT
AATAAAGGGTAGTCATAGTCAGCAAAACTCTATTGAAGTTAGAAGTCTAT
TGAAGTTAGCTCTAGAAACGGTGAATTAGCCCGATTTTCTACTGAAGGTC
TTTCTGATCTTTTTTTCGGACAATAATTGGAAAACTATTGCCCACTAAAA
ATTTTGTTTCATTATAAGCATTTTGTTTATTTGGCTTATCTGATAATGTT
TAGTAATAAGGTCCGGGGGTTGGAAAATTTTCGAAAAATTAACAAGCGGG
AGGCCGTTTATTTGGAACCTAGGACTACCATATTTCATAAAATATATCAT
TTCTGATCATTTTGGTATTCTAACTTTCGCTTTCAAACTTTCGCTTTCAA
ACTTACAAAAGTACGAAAAGAAAAAGACAGGAATTTTTAAATGAGAGTAA
AATATAAAGTATGACATTTTTTTAAAAATCGAAGAAAATTTTTCAAGTAG
GTCCTTCTAAGAATCAACTATTCAGCAAAAATCGGTCTCTCTAAGGGTCG
GTTTTCGGAAGTCCCGTCCGCACATACCCCTCATCCACCAAACCTAGTAC
TCCCCCGGACATCATTCCATTTCATAAACAATGAAAAGACAATACTTCGC
TTCCACTGTAAGGGACAAGCTGGAGTTTTTACAAGCTCTCGTTTGATTTG
GTTGGTCGTTAACCTGTAATAAAACAATTTTGTTACTTTTTCTAAAGAAC
GCGTCATCTCTATTACTTCAAATAACCAATCAATTAGTGAAGTCTCTTAA
AAAAACTCCAGCCCATCCCCACTGTAACGGGTATGCAGGTTTATTATTTG
ACTTGTCACATGTTAACAATCTTAATATTAATAGACAAGTGTCGCTTAGC
AATGCACTTTAAGTATTTAATTCAGGACTCAAAACGTTTATAATTTCCTC
TTATAATGATATATTTATTAACATGCAATACGGACCACTCTTTGAAAGGA
TCAACCGATTTGATATCTATAGAGTCAAATTAAACTTTCTAGACATGAGA
TTTTTATCCTAAAAGGTTAAGAAATGGACCAAAACTATCCATAAACCCTG
CGTTATGTTTTCCTTTTATGCTTTGAAACCATCTTTTTATCCTTGTGCTT
TATCCAATTTGGAAAAGCACATTTTCGCACTGATTTATACCCCTAGAAGT
TTTTTATTTCCAAATTTGCTTGTAGATATTCTTCCACTGCATTTTTTATT
ATTTATAAAATAAAAATTTTTTTTTATAAAACTCGGTATAAATATTTTCT
TGCATTTTTTTATATTTTCATTTCTAGATAATTATTGCATTGATTGATTG
ATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGAT
TGATTGATTAGCATATTATTTCATATTATCCACGATTTATATTAAATTGA
AAATGTGTATTTAAAAAATAATTTTTCAGTTAATCGGTAATAATAAGGCA
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007491XLOC_007491Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013408-exon-sc0000167-1575043694:57881..58063TCONS_00013408-exon-sc0000167-1575043694:57881..58063Clytia hemisphaericaexon
TCONS_00013408-exon-sc0000167-1575043694:54013..56689TCONS_00013408-exon-sc0000167-1575043694:54013..56689Clytia hemisphaericaexon
TCONS_00013408-exon-sc0000167-1510915933:57881..58063TCONS_00013408-exon-sc0000167-1510915933:57881..58063Clytia hemisphaericaexon
TCONS_00013408-exon-sc0000167-1510915933:54013..56689TCONS_00013408-exon-sc0000167-1510915933:54013..56689Clytia hemisphaericaexon
TCONS_00013408-exon-sc0000167-1491911889:57881..58063TCONS_00013408-exon-sc0000167-1491911889:57881..58063Clytia hemisphaericaexon
TCONS_00013408-exon-sc0000167-1491911889:54013..56689TCONS_00013408-exon-sc0000167-1491911889:54013..56689Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000167supercontigsc0000167:54013..58063 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3.11891e-08	0.526189	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013408 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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