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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013426 ID=TCONS_00013426|Name=TCONS_00013426|organism=Clytia hemisphaerica|type=transcript|length=2091bpRun BLAST on NCBI transcript from alignment at sc0000167:456008..479213- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013426 ID=TCONS_00013426|Name=TCONS_00013426|organism=Clytia hemisphaerica|type=transcript|length=23206bp|location=Sequence derived from alignment at sc0000167:456008..479213- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00013426 vs. Swiss-Prot (Human)
Match: SC5A8 (Sodium-coupled monocarboxylate transporter 1 OS=Homo sapiens GN=SLC5A8 PE=1 SV=2) HSP 1 Score: 408.297 bits (1048), Expect = 1.456e-132 Identity = 228/559 (40.79%), Postives = 348/559 (62.25%), Query Frame = 1
Query: 52 MDSYRTENAFSIADYCVFGGMLLISSVIGIYFAY-GGKQKSTKEYLMAGRDMPWFPVFVSLLASYLSAITLLGVPSEIYTYGVQYIVLCFSYFILIGAGVIIFLPIFYKLQVVSSNEYLEKRFTPGVRSLGCCLVSLQYILYLAVVLYAPSLALEAVAGVPLTATIISTGLVCTFYTTLGGMKAVIWTDVFQAFVMVTGLIVVIIVGAVELDGFGEVFSRIQAGQRDRVFDFNPDPTTRNTFWTLSIGGAFTAMPVWTVCQPAVQRFQAARSLKESKKALGMNXXXXXXXXXXCVMDGCVIYAVYSKCDIGKFGLGYVTSNDQVLPYFIIDKLKEYQGVPGLFTSCLFSGALSTASSGLNSIAAVLLEDVVKKVKPDINDAAATRMSKIIACALGFLVIGLSFLVSKFGTMVLQLAYSIFGIIGGPYLGLFCLGMLVPWSTWKGAYCGVVVGVSTTLWLAVGGIIYPPNKHAQMVDVRECQVYKDYHNPNATMYE-QLRNDTKIPSIVQGNGLAYPTLEFKDHDIS----LASWYSMSYLWYAAIGVSFTFVTGCLVSL 1710
MD+ R F + DY VF GML+IS+ IGIY+A+ GG Q+++K++LM GR M PV +SL AS++SA+T+LG PSE+Y +G + + F+YF ++ +FLP+FYKL + S+ EYLE RF VR G L +Q ILY +V+YAP+LAL V G L +++TG+VCTFY TLGG+KAVIWTDVFQ +MV G VII V G + + G R ++FNP+P R+TFWT+ IGG FT ++ V Q VQR+ + +S ++K +L +N++GL I+ V G +Y+ Y CD + V++ DQ++PY ++D L++Y G+PGLF +C +SG LST SS +N++AAV +ED++K +++ + + +S+ ++ G L IG++ L S G + LQ A S+FG++GGP +GLF LG+LVP++ GA G++ G + +LW+ +G IYPP + R ++ D N+T E L T++P + T F+ +++ + +WYS+SYL+++ +G T + G LVSL
Sbjct: 1 MDTPRGIGTFVVWDYVVFAGMLVISAAIGIYYAFAGGGQQTSKDFLMGGRRMTAVPVALSLTASFMSAVTVLGTPSEVYRFGAIFSIFAFTYFFVVVISAEVFLPVFYKLGITSTYEYLELRFNKCVRLCGTVLFIVQTILYTGIVIYAPALALNQVTGFDLWGAVVATGVVCTFYCTLGGLKAVIWTDVFQVGIMVAGFASVIIQAVVMQGGISTILNDAYDGGRLNFWNFNPNPLQRHTFWTIIIGGTFTWTSIYGVNQSQVQRYISCKSRFQAKLSLYINLVGLWAILTCSVFCGLALYSRYHDCD--PWTAKKVSAPDQLMPYLVLDILQDYPGLPGLFVACAYSGTLSTVSSSINALAAVTVEDLIKPYFRSLSERSLSWISQGMSVVYGALCIGMAALASLMGAL-LQAALSVFGMVGGPLMGLFALGILVPFANSIGALVGLMAGFAISLWVGIGAQIYPP------LPERTLPLHLDIQGCNSTYNETNLMTTTEMP---------FTTSVFQIYNVQRTPLMDNWYSLSYLYFSTVGTLVTLLVGILVSL 541 The following BLAST results are available for this feature:
BLAST of TCONS_00013426 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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