TCONS_00013465 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013465
Unique NameTCONS_00013465
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2038

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013465 ID=TCONS_00013465|Name=TCONS_00013465|organism=Clytia hemisphaerica|type=transcript|length=2038bp
AGAAAATAAGCCGATGAACTTCAAGAAAAAAGCAATTGATAATTGATCTT
GACAGactgaaaagttgaaaaacagTGAAAAGTTGAGTTGAGATTTCTCA
CACCAAAAAGAGAAACCATgtttattgacaaaaagaagATCAAAACATTG
GCTGTGTAAACCGTGGAATGTTCGAATCTATGTGAGTTGTAGTACAAATT
TCATTCGGCAAATTTAGctttagttttgttttgatctaaattcaagatgg
cggacgaaGCAGGACGTCGATCCAACCTGGACCCTCAAATTACCATAAAT
GATGTTGTTAACAACGTGAAATCTGAAGGAATTTTCGACCAATTTCGAAA
GGAATGTATTGAAGAATTCGAAAATATGGAGAGCTTCAATCAGTTGAAAC
AGACCGTTGAGAATCACGTGGcatcatttttgtcaaaaagaagATTCTCA
GAATTACTACAGAAAAATCTACTGAGAACTGAGCTCAGGAATCATTTGAA
CAAatCTGAAGTGTTATTGAATGGTATTCAACGTCTGGTTGATGAAGTTT
TGAGTTTGAAAGGTCATgggttttgtttgaaaattgacAAGCAAGTGGAC
CAGTTCTTAAATCCGCAGACGACCACACAAGTAGAACAAAACAGACATTC
CGTTAACCTCGTCCAGAATCTTGTCAATGAAACACCAGTTtctacagaag
aaatttctCATCATATTACACCCAATAAGCCTTCGATAAACAATGAAACC
TCAGCAAATATAGACatcaaagaagaaaatatttctgaaCCGCCTAAAGA
AAGATCTTTGTTGGAAGAGATTTCTCCTGATATAAATAATCAAAAGAATG
TTGAACCCAATGATGTCGATTTACAGGAAATGGAAGTGGAGGAGGTTGGA
ATAGAGCTTGGAGATACTAATAACGATATGATGGTGATTGAAAAACACAC
TGAACAGTCTTTGGTGACTGAAAACCCTTCCATTAAGGATAATTCTCCTC
AGCTCGAACAACACGAACACATTGGACCTGAACAGGAGGAGAAAATCGCT
GAGACGGATGAAAGCGTTGAGAAACGAAAGAATGAGTCGGAGTCtgagaa
agtgaaaaataataaaaacgaAATTGAagacgaaaataaaaaagaggTTT
TAGAAGAGAAAAAGGAAATTAATCAGTCGAGAAATATTGAACGCTCCTCT
GGTGATCAAGAGGATGTTGATTCCGAACAAGAAGGTTCACAGACACCCGT
TCAAGACGAAAAAACTGTTATTGAGGATCGGGTGTCCGGTAAAAATAATC
GATCATCTAATTCGTATTATACTTCTTTAGTAACAGAACCAATTAGTGAT
GATTCATCGAGTAATAGCACACCTGATAGTTTTGAACCGATTTCTGAAGA
GGACGATGATGAAAGTCAAGTAAGCGAACCCGAGGAGGGCGCCGATCGAA
GGAAATCATACCGTAAACGCAATATACCGTTAAAATATCGTGACGAAGAG
GGTGAGGAGGACGAAAAATCGGCGAAAGGAACCGATAAAAAACGACCAAC
GTTAAGAAAAACACGATCGAAAGACACTACTGAGGAAATTCATCGTGATA
AATCGAATGATCGAGCATCTTCGAAGAAAAAAGAACGATCACATCGAAAA
ATCGAGAAGAGTGATAGCGAAAAAAGTCGTGACAGGAGTCGATCAAGAGA
CAAGCAGAATCGTAAAAATGAAGGAGGGCGTTCTTCGGGCGCCGTTAAAA
GACCATCGACTCCGCCCGAACCTGAGGAACGTTTTTCAAAGAGACCAAGA
AGACCCACGAAACAAAGGGAACGATATTCTCCGTCTTAATGTTCTACAGA
TTTACtacaaatttggatttttgttaCCAGTTTTCTGTTAGCTAATATAA
TAATTGATAAAAGAATATTGTTTCACGTCAAttcttttcatcttttcatt
gtttattcattttcacCTAGGTGAAAATTATCACATAGCGCGGAAAGGGG
TCTGATCCCCCCTTCTTAAATGACCCCCCTTCTTGGCA
Run BLAST on NCBI

protein sequence of TCONS_00013465-protein

>TCONS_00013465-protein ID=TCONS_00013465-protein|Name=TCONS_00013465-protein|organism=Clytia hemisphaerica|type=polypeptide|length=530bp
MADEAGRRSNLDPQITINDVVNNVKSEGIFDQFRKECIEEFENMESFNQL
KQTVENHVASFLSKRRFSELLQKNLLRTELRNHLNKSEVLLNGIQRLVDE
VLSLKGHGFCLKIDKQVDQFLNPQTTTQVEQNRHSVNLVQNLVNETPVST
EEISHHITPNKPSINNETSANIDIKEENISEPPKERSLLEEISPDINNQK
NVEPNDVDLQEMEVEEVGIELGDTNNDMMVIEKHTEQSLVTENPSIKDNS
PQLEQHEHIGPEQEEKIAETDESVEKRKNESESEKVKNNKNEIEDENKKE
VLEEKKEINQSRNIERSSGDQEDVDSEQEGSQTPVQDEKTVIEDRVSGKN
NRSSNSYYTSLVTEPISDDSSSNSTPDSFEPISEEDDDESQVSEPEEGAD
RRKSYRKRNIPLKYRDEEGEEDEKSAKGTDKKRPTLRKTRSKDTTEEIHR
DKSNDRASSKKKERSHRKIEKSDSEKSRDRSRSRDKQNRKNEGGRSSGAV
KRPSTPPEPEERFSKRPRRPTKQRERYSPS
Run BLAST on NCBI

transcript from alignment at sc0000168:288928..303118+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013465 ID=TCONS_00013465|Name=TCONS_00013465|organism=Clytia hemisphaerica|type=transcript|length=14191bp|location=Sequence derived from alignment at sc0000168:288928..303118+ (Clytia hemisphaerica)
AGAAAATAAGCCGATGAACTTCAAGAAAAAAGCAATTGATAATTGATCTT
GACAGactgaaaagttgaaaaacagTGAAAAGTTGAGTTGAGATTTCTCA
CACCAAAAAGAGAAACCATgtttattgacaaaaagaagATCAAAACATTG
GCTGTGTAAACCGTGGAATGTTCGAATCTATGTGAGTTGTAGTACAAATT
TCATTCGGCAAATTTAGctttagttttgttttgatctaaattcaagatgg
cggacgaaGCAGGACGTCGATCCAACCTGGACCCTCAAATTACCATAAAT
GATGTTGTTAACAACGTGAAATCTGAAGGAATTTTCGACCAATTTCGAAA
GGAATGTATTGAAGAATTCGAAAATATGGTAGGTATTGCCTTTTAAAGTA
TTTTCTATccctttgaaatgttcttttggCAAAGGATCGAAAGGCAAAAG
GAAATCAATGAAGTAGAACTCACGGTCAGGGATATCCTTGCCTTAGGGAT
TTTGTATGTAATTGCATTAGGTAAATGGATCAAATTGTATTTATCGAAAA
TTGAAGGTATGAATTCTTTTTCCAAtgggtaatttttttcttgatttgaa
gATTATTTTACAGAAGAAATGAAGTTGCCGTTTCTTCAATTTgctttttt
gccattttcaatATAAAGGTCAATTTAATTAGCATGATTTGCCCAAGACA
TCCTTTTATTGCATTTACACTGGGTATGGAAAACTTGTTGCAAATGCACA
CCCCATTCAATTGCAAAGATGTGCCAGCCAGACTCACTTTTTAGCTAAGC
AGctacattttttaatatttattgatGTAGAACATAGAGAATCGTTAGTA
CTTCTTGAAGGTAACGTTTTCTTTGTAGGCTATAATAGGGATATTATTTA
TTGTAATTGTGCCTGTGTTTTGCCACATAAATCTGCATCATCAATGTCCT
GCACTatacagtttgtttttaaaagaaaaagaataattgttctttttttg
gttaaaaatgaGTGTTTATaagaaatatataaaatgaaaacctcttttta
gaaaatcataaaaatactTGATTATAAGCAAGGAATTTATTTTGGTGAGg
cattaatttttcaattttggaaaatagCGAAATTTTGGTGTATATTTTGG
TATGGTAAAAATCCCCAAATTTCTCAAAGTTAGTCCCACTTAAAGCACCT
TGGCATCCctagttatgacgtcataatcgatgacgacTGTCacatatttt
ggtcaaaattcaagTTGTCCAAATATGCAAGTATTATATATCAATCAATC
GCAAATTGAAAGCTGAACAACTTTTTAGCTTACAAAAAATCCTGTAAATG
TACTGAATGTGAGTAAAATGGAATATTGCCTCTGACGTCATCAGGGTAAA
AATGCAAGGATAGAATTCCACTATTGGTATTGACGAATCTGAAAGATTGC
TTTGACTGCGATGCTTTAGTTCGTCTAATGGCTTGTACTTTGGTGGGCTT
TTTCGTAAAAATATTGATTATTCCTATACCATGGAAGGTTCCTTTTCCAG
TGAGGGTACGAATGTTGTGATCAGCGTTATCTGCCGAAAATTGTTCCAAA
TTGGGTTTGTCAATAACTTGGTTTGTTGTAAGTTCATTGGGTAACGATTT
CGTTTCGGATGTCGCTTGGCTGGAAGATTTTATGAAAGAGTCATCCCGTA
AAACCTACGCTGATATAACCAAAGCACACaaggaaaatcttaaatctgtt
gttgcggaacaaaaagaagaggagaggagagaaaaacgagacatcgaatc
aagaagaaaaaacatcataatTCATGGACTTTGTGAACAAGCTGAAGACA
CGAAAGAAGAAGATCAAGAAGAggacaaaaaggaaattgaggATCTGCTA
AAGATATCGGCATCCGCGACATCAAACCAACGCATCAACATCGTATTGGG
TTCGAACATGAAAATAGGCCGAAGAAAAATCGTCCGATAAAGGTGACCTt
gcaaagtgaagaagaaaaagaaagaattatgAGCAAccttaaaagcctta
aaaaagttAAAGTGGCTTGGATATCATCTAAGCATCACTGATGATTTCAA
catcaatgaaagaagaaaaatcaaagagatgtgcgaaaaagctaaaaaat
ggaaCTCCGAATGTGATGGTGATTTCATTTGGCGTGTGAGAGGAAGTCCC
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTA
GCAGCGACGATGAGCTGCCAACAAAACATTagtcttttttaattgtaaag
tagcgttgacttttattagcctttgttgctacctttttgtcaacatgaaa
taaactattacttacttacttactggATGACAGAAGCGTATCGGGTGTTG
TTTGGTTGGCTGACTGAATTTTCTTGGTTGTCTTTTGATCAGTTGACGGA
ATTTTCTCGGTTGTCGTTTGATTAATTGATGGATTCGTCTCGGCTTTCGT
TTGATTGATTGATGGATTCNCTTGGTTCGTTGTAAGTTTTGTTGTGAGTT
CATTGGGTAAACTATTTTGTTTCGGATGTCGCTTGGTTGGCTGACGGGAT
TTTCTCGGCTGTCGTTTGGTTGCTTGATGAATTCGTCTTGGCTGTCGTTT
GGTTACTTGATGGATTCGTCTCGGCTGTCGTTTGGTTGCTTGATGGATTC
GTCTCGGCTGTCGTTTGGTTACTTGATGGATTTGTCTCGGCTGTCGTTTG
GTTACTTGATGGATTCGTCTCGGCTGTCGTTTGGTTACTTGATGGATTTG
TCTCGGCTGTCGTTTGGTTACTTGATGGATTTGTCTCCGTTGTCGTTTGG
TTGGTTAACGGATTTGCCTCTGATGATATGGATGCAATAGCAGATTCTTT
GAACAATTTAACTTCTGCAGAGGATACGGAAAATCCAAATTTCGCTAAAT
GATCAATAAACCATCTAGTGGCGAAAGATTTGTCAAGACCTTCACCTATT
CCAAAAGCTATCGCAGCAATTGATGACCTCCGTCTTGATGGGAGTGCGAC
TGTCTGGTCGATGCTGATTTGTTTGAGCTTTGAAGTGAATAATTGTTCGA
GGAATTTGCTCATGTGTTTAAAACCAATTATATCGCTTCGTCCTCAAAGT
TAAATACTACCGATACAGTAGCTGCTGTCTAAAAACAACAGAAACCTAAA
TAAAACTTCACTTTGAATGAGATATCTTTGATCTTCATATTTTTGCATTA
GTTTCGTTTTCAAATAATTTCTATGGTAGTAGTCAGTTCCTTTACTCAAC
TTGACCATCTTGTCATAAATTTCAGTAAGAGTGTACAGTTCTCCGTCACC
TTCGTCAAACCATTGGCAtacctttttgaaattttaagtttgGATTGCGT
CGGGCTTTCTACCTGAAGATTTGTCGTTATTGTCGCCATTGGATTTGTTC
AGACGGAAACCAATCATACATACGATGTGGTATACAGCTTCCGCTGCAAC
TAGGTCAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAACAAAAATACactacaga
agaaatcgtcagcgattgggcatcAACAGATGATGTAGACTATTCGTcta
cagatgatgatgaatgaatcattttgtaaataggtagtcgaactctatta
gctttaaagctagtacatatttgtacacttttttcgactttaaagaatat
acacattaacattaacattgcAAGAGTTTAAACGATCATGCACCTTCGCT
CCCCAGTCATCGGCTCTCTCTCGTGAACATTCAAGTAAGCGGTAGGGTTT
CCATTTTTTATTACAGTTGAATACTTAGGGTTGGCTTTCCTGTTagacaa
aaaacaatttttcttctAATCAAAGACTGGCTCGGCGAAACACGATGATC
TTAAACGTTAATTGCAGGTCGGTTGttaacctcgtccccgtgtattccag
attttatttactttgcttGATCAAAGACCTTAGAAAAAAGTCTTTGGCTT
GatagacgccagagaatattatctagcgctatcacaGTAAGTATAAAata
agctgataatacgcagggaacgaggttggtcgGTTGTCTGAGTTGTCTGG
GATACTACGTTTCGGTAATCTTTTTCCTACATGATTCGTGTACTCTGATT
TTATACTCTTGCCTCTTTCAACTCCCTTTAGGAAATACAAAACTGTCgaa
tattttacaaatctaaATAATTGAACTagcaaaaacaaattttcaggatt
ttccaTGGGCAAAAAGGTTGTTTGGCTTTTAATTTGCGATCGATTGATCT
ACAATACTTGTATGTTTGGACAACTTGAATTTTTAGGATATTTGtcctga
tgacgtcatgttaatgtttaatgttaatgtatgtattctttaaagtcgaa
aaatgtgtacaaatctgtactagctttaaagctaatagagctcgactgcc
tattttacaaaatgaatcattcatcatcatctatTGATGCCCAATCGCCG
ccaatcgctgacgatttcttctgtagagcattttggtttataatttgaag
atatttttgtttggttttgtaattttttaacgatgcgtagttttgttctt
ggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATGATTTTTTCgat
tggaaaaataaattttaaaatagtaaggctgaatcttgtgttctctgtgt
tcttgtgtccaccacgatggaaaaaataaattctacaatagtaagactga
atcttgtgttctctgtgttcttgtgtccaccacgataggaaaaataaatt
ctaaaatagtaagactgaatcttgtgttctttgtgttcttgtgtccactg
tgatgggaaaattaaattctaaaatagtaaggctgaatctctgtgttctt
gtgtccaccacgataggaaaaataaattctaaaatagtaagactgaatct
tgtattctctgtgttcttgtgttcacaggtcacaggtcacgggttgacgg
gtcacaggtcatacaaattacagactgGAAAACTGNNNNNNNNNNNNNNN
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NNNNNNNNNGTTTAAAGCAAAAGGTGAGATCAATGTTTTTTAATACGTAT
TCTTTGTATTAACATACGTAACATgcatataacattgaaaagataatttt
tattacatgttTGATTTaggtgtaatatataatacaagtattacaggtcc
gtgttatatacacggcataaaacgcgaAAGCACGTGGTAAGCACGTAGAT
AGATTTTTGGCTTTAAAAaagttctagatcaataaaataccttttgaatt
atatttttcacattaacaactgtttttcaaacattttctttgtgttttac
agtacttgaagctgacctgtcaacactgacctgtgacctgtgacccgtga
cctgtgacctgcgttttacactaaccggaaaatcggacacaagaacacag
agaacacaagattggatttgggatttctgtaattgataaaatcggacaca
agaacacagagaacacaagatttggatttggaaattctgtaattgataaa
atcggacacaagaacacagagaacaNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNTTCAGTCATTACcatcttaaaatttatttttcccattgc
ggacacaagaacacggagaacacaagattcgGATTTGAATTCTGAAATTT
ATCAACTTTGAATTCGAATACGGAATTAAATAGCCTGAATCTTTGATAAT
AAATAGCCTGGATCTTTGAAAAAGTGGAAAGCCAATGAGATTCGAGCTTT
ACTTCTTCACcacgaaaaaagtgaccctgaatgggactgaaattccaaaa
ttttctcaaattttctacttttttcccaaattttccaaaaataggcaccc
tacgagggactgattttttctATTTNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtt
tttgcgaccctacctgggacttgtggaggttaaaaaaggtaccctgacca
gcggagcatccccgtaacccatcttgccctagtaccccccccgggtttcC
GTCTTTATTTCTGCTGTGTGCTTTATTTGCTCCTTTATCATGCTTCTTGC
TTTTCCTCCATCTCTTGTAGTTTTCCTGCCAGAAAGGTTTTgaggtcatt
tttgatggaGTCACGGGTTTTGGTTTTGAActcgttgttcagtttttgta
tgacgtcgtctttctttttaagttcattttgcatcatattttgagtgttt
ttttttatttcttaagTTTTTCGTTATTCGCacgcagtttgaacataagt
aatgatcgtTGTAGGATGTCACGAATATTTGTAGTTGTACAGGGGTAACT
TtgtgcactcataatgaactgatcttttacattttttgcatgttaagcGA
TCCAGATCTTCGTCTTCAgtacatcttgacggcgtgcaagcttgaggtgg
tgaggctacttcgaaaggctgatctttatccatttcgatgttattttcat
gaattttgatgtttttatttgctttcagccattttttcgaagagcAACAT
TGTCCTTAAATTTACTCACATTCAGTACATTTACAGGATTTTTTGTAAGC
TAAAAAGATGTTCAGCTTTCAATTtgcgatcgattgatatataatACTTG
CATATTTTGACAACTTGAATTTTTACCAAAATATGTGACAGTCATCATTG
ATTATGACGTTATAACTGGGGATGCCAAGGTGCTGAAGGTGGGGGGTTTT
AATGTGGGTTTCCTGACACCTTCCCTGaactctgtgcaaaatttcagctt
tataccaatttttttaAGGTTCGGTTGATTTTTTTGGCTAATTCCCCTAT
ACTATAAGTACACCCCCCGGATGTACTATAACAGGGTTTTCAAGAGTTCT
TTGCATATCACCACCCCAATTCAAAAAAGTACTAAACATTTTGGGACATT
TTGATACAGAAACTACCTtaagtgtatatatttttaagtttgtaatactg
tttcaatttttcagaaacACCAAATCATAAAATTGAATACATGCGAAAAA
CTTCCAAAATAGGCTGGAAATTTTTTCTACTGTGTTACTATTTTGTCACC
AATTTGATACAATTTTGGTGCTATTTTACCACTTAATATACGTTGTGTTT
AAAGcaaattttgaattaaatttaaaaatactgCAATGTATAATAAGAAA
AAATGAGGCTTCTTAGCCAAAGATTTATGACTGTTCCAAcaacatttttt
aaagctttgcaaACTCCAAACATGCAGTTTCTTGGGAAATTAGACAAAAA
TAATAACGACgcaacatttttaggctcaaaagcaagaaaaaaattatgaa
tcaTCAAAGTATCAAAGCCTTTATAAAAATACTTTTCgaattcttattaa
aaatatGTAAGGCTTATCTGCAGATTTCACATTAATTCTTAAATTTTGTG
GCTTCCTTTTTTTTCTAGGAGAGCTTCAATCAGTTGAAACAGACCGTTGA
GAATCACGTGGcatcatttttgtcaaaaagaagATTCTCAGAATTACTAC
AGAAAAATCTACTGAGAACTGAGCTCAGGAATCATTTGAACAAGTTCGTA
TTTTTTTATCgtaaatttcacaattttttttatcttcgaaacaactaaaa
tatatcaaaaaatcTATTTAATTATGGcgagaaaaaattaatttattgtt
atACGGGAAAGACCTTCAGAATAACACGGGTAGGTCGGTTGTTATAATAA
AGATACtgtaaatttcttaaaatctaggGTCAGAAGTTCAAGATCAAAAC
TATTTATGACGTTTTGAGGCTGTagactttttcctctttatcGATGAAGG
ACTTTTGCACTAGTTCCATTATGATATTTTAAATTTATCTAAGTTCTGGA
ATgagttttcactttttaaacTTGCAAACTCGatattattaatttttcga
ttttagatCTGAAGTGTTATTGAATGGTATTCAACGTCTGGTTGATGAAG
TTTTGAGTTTGAAAGGTCATgggttttgtttgaaaattgacAAGCAAGTG
GACCAGTTCTTAAATCCGCAGACGACCACACAAGTAGAACAAAACAGACA
TTCCGTTAACCTCGTCCAGAATCTTGTCAATGAAACACCAGTTtctacag
aagaaatttctCATCATATTACACCCAATAAGCCTTCGATAAACAATGAA
ACCTCAGCAAATATAGACatcaaagaagaaaatatttctgaaCCGCCTAA
AGAAAGATCTTTGTTGGAAGAGATTTCTCCTGATATAAATAATCAAAAGA
ATGTTGAACCCAATGATGTCGATTTACAGGAAATGGAAGTGGAGGAGGTT
GGAATAGAGCTTGGAGATACTAATAACGATATGATGGTGATTGAAAAACA
CACTGAACAGTCTTTGGTGACTGAAAACCCTTCCATTAAGGATAATTCTC
CTCAGCTCGAACAACACGAACACATTGGACCTGAACAGGAGGAGAAAATC
GCTGAGACGGATGAAAGCGTTGAGAAACGAAAGAATGAGTCGGAGTCtga
gaaagtgaaaaataataaaaacgaAATTGAagacgaaaataaaaaagagg
TTTTAGAAGAGAAAAAGGAAATTAATCAGTCGAGAAATATTGAACGCTCC
TCTGGTGATCAAGAGGATGTTGATTCCGAACAAGAAGGTTCACAGACACC
CGTTCAAGACGAAAAAACTGTTATTGAGGATCGGGTGTCCGGTAAAAATA
ATCGATCATCTAATTCGTATTATACTTCTTTAGTAACAGAACCAATTAGT
GATGATTCATCGAGTAATAGCACACCTGATAGTTTTGAACCGATTTCTGA
AGAGGACGATGATGAAAGTCAAGTAAGCGAACCCGAGGAGGGCGCCGATC
GAAGGAAATCATACCGTAAACGCAATATACCGTTAAAATATCGTGACGAA
GAGGGTGAGGAGGACGAAAAATCGGCGAAAGGAACCGATAAAAAACGACC
AACGTTAAGAAAAACACGATCGAAAGACACTACTGAGGAAATTCATCGTG
ATAAATCGAATGATCGAGCATCTTCGAAGAAAAAAGAACGATCACATCGA
AAAATCGAGAAGAGTGATAGCGAAAAAAGTCGTGACAGGAGTCGATCAAG
AGACAAGCAGAATCGTAAAAATGAAGGAGGGCGTTCTTCGGGCGCCGTTA
AAAGACCATCGACTCCGCCCGAACCTGAGGAACGTTTTTCAAAGAGACCA
AGAAGACCCACGAAACAAAGGGAACGATATTCTCCGTCTTAATGTTCTAC
AGATTTACtacaaatttggatttttgttaCCAGTTTTCTGTTAGCTAATA
TAATAATTGATAAAAGAATATTGTTTCACGTCAAttcttttcatcttttc
attgtttattcattttcacCTAGGTGAAAATTATCACATAGCGCGGAAAG
GGGTCTGATCCCCCCTTCTTAAATGACCCCCCTTCTTGGCA

Coding sequence (CDS) from alignment at sc0000168:288928..303118+

>TCONS_00013465 ID=TCONS_00013465|Name=TCONS_00013465|organism=Clytia hemisphaerica|type=CDS|length=4779bp|location=Sequence derived from alignment at sc0000168:288928..303118+ (Clytia hemisphaerica)
atggcggacgaaGCAGGACGTCGATCCAACCTGGACCCTCAAATTACCAT
AAATGATGTTGTTAACAACGTGAAATCTGAAGGAATTTTCGACCAATTTC
GAAAGGAATGTATTGAAGAATTCGAAAATATGGAGAGCTTCAATCAGTTG
AAACAGACCGTTGAGAATCACGTGGcatcatttttgtcaaaaagaagATT
CTCAGAATTACTACAGAAAAATCTACTGAGAACTGAGCTCAGGAATCATT
TGAACAAatCTGAAGTGTTATTGAATGGTATTCAACGTCTGGTTGATGAA
GTTTTGAGTTTGAAAGGTCATgggttttgtttgaaaattgacAAGCAAGT
GGACCAGTTCTTAAATCCGCAGACGACCACACAAGTAGAACAAAACAGAC
ATTCCGTTAACCTCGTCCAGAATCTTGTCAATGAAACACCAGTTtctaca
gaagaaatttctCATCATATTACACCCAATAAGCCTTCGATAAACAATGA
AACCTCAGCAAATATAGACatcaaagaagaaaatatttctgaaCCGCCTA
AAGAAAGATCTTTGTTGGAAGAGATTTCTCCTGATATAAATAATCAAAAG
AATGTTGAACCCAATGATGTCGATTTACAGGAAATGGAAGTGGAGGAGGT
TGGAATAGAGCTTGGAGATACTAATAACGATATGATGGTGATTGAAAAAC
ACACTGAACAGTCTTTGGTGACTGAAAACCCTTCCATTAAGGATAATTCT
CCTCAGCTCGAACAACACGAACACATTGGACCTGAACAGGAGGAGAAAAT
CGCTGAGACGGATGAAAGCGTTGAGAAACGAAAGAATGAGTCGGAGTCtg
agaaagtgaaaaataataaaaacgaAATTGAagacgaaaataaaaaagag
gTTTTAGAAGAGAAAAAGGAAATTAATCAGTCGAGAAATATTGAACGCTC
CTCTGGTGATCAAGAGGATGTTGATTCCGAACAAGAAGGTTCACAGACAC
CCGTTCAAGACGAAAAAACTGTTATTGAGGATCGGGTGTCCGGTAAAAAT
AATCGATCATCTAATTCGTATTATACTTCTTTAGTAACAGAACCAATTAG
TGATGATTCATCGAGTAATAGCACACCTGATAGTTTTGAACCGATTTCTG
AAGAGGACGATGATGAAAGTCAAGTAAGCGAACCCGAGGAGGGCGCCGAT
CGAAGGAAATCATACCGTAAACGCAATATACCGTTAAAATATCGTGACGA
AGAGGGTGAGGAGGACGAAAAATCGGCGAAAGGAACCGATAAAAAACGAC
CAACGTTAAGAAAAACACGATCGAAAGACACTACTGAGGAAATTCATCGT
GATAAATCGAATGATCGAGCATCTTCGAAGAAAAAAGAACGATCACATCG
AAAAATCGAGAAGAGTGATAGCGAAAAAAGTCGTGACAGGAGTCGATCAA
GAGACAAGCAGAATCGTAAAAATGAAGGAGGGCGTTCTTCGGGCGCCGTT
AAAAGACCATCGACTCCGCCCGAACCTGAGGAACGTTTTTCAAAGAGACC
AAGAAGACCCACGAAACAAAGGGAACGATATTCTCCGTCTTAAatggcgg
acgaaGCAGGACGTCGATCCAACCTGGACCCTCAAATTACCATAAATGAT
GTTGTTAACAACGTGAAATCTGAAGGAATTTTCGACCAATTTCGAAAGGA
ATGTATTGAAGAATTCGAAAATATGGAGAGCTTCAATCAGTTGAAACAGA
CCGTTGAGAATCACGTGGcatcatttttgtcaaaaagaagATTCTCAGAA
TTACTACAGAAAAATCTACTGAGAACTGAGCTCAGGAATCATTTGAACAA
atCTGAAGTGTTATTGAATGGTATTCAACGTCTGGTTGATGAAGTTTTGA
GTTTGAAAGGTCATgggttttgtttgaaaattgacAAGCAAGTGGACCAG
TTCTTAAATCCGCAGACGACCACACAAGTAGAACAAAACAGACATTCCGT
TAACCTCGTCCAGAATCTTGTCAATGAAACACCAGTTtctacagaagaaa
tttctCATCATATTACACCCAATAAGCCTTCGATAAACAATGAAACCTCA
GCAAATATAGACatcaaagaagaaaatatttctgaaCCGCCTAAAGAAAG
ATCTTTGTTGGAAGAGATTTCTCCTGATATAAATAATCAAAAGAATGTTG
AACCCAATGATGTCGATTTACAGGAAATGGAAGTGGAGGAGGTTGGAATA
GAGCTTGGAGATACTAATAACGATATGATGGTGATTGAAAAACACACTGA
ACAGTCTTTGGTGACTGAAAACCCTTCCATTAAGGATAATTCTCCTCAGC
TCGAACAACACGAACACATTGGACCTGAACAGGAGGAGAAAATCGCTGAG
ACGGATGAAAGCGTTGAGAAACGAAAGAATGAGTCGGAGTCtgagaaagt
gaaaaataataaaaacgaAATTGAagacgaaaataaaaaagaggTTTTAG
AAGAGAAAAAGGAAATTAATCAGTCGAGAAATATTGAACGCTCCTCTGGT
GATCAAGAGGATGTTGATTCCGAACAAGAAGGTTCACAGACACCCGTTCA
AGACGAAAAAACTGTTATTGAGGATCGGGTGTCCGGTAAAAATAATCGAT
CATCTAATTCGTATTATACTTCTTTAGTAACAGAACCAATTAGTGATGAT
TCATCGAGTAATAGCACACCTGATAGTTTTGAACCGATTTCTGAAGAGGA
CGATGATGAAAGTCAAGTAAGCGAACCCGAGGAGGGCGCCGATCGAAGGA
AATCATACCGTAAACGCAATATACCGTTAAAATATCGTGACGAAGAGGGT
GAGGAGGACGAAAAATCGGCGAAAGGAACCGATAAAAAACGACCAACGTT
AAGAAAAACACGATCGAAAGACACTACTGAGGAAATTCATCGTGATAAAT
CGAATGATCGAGCATCTTCGAAGAAAAAAGAACGATCACATCGAAAAATC
GAGAAGAGTGATAGCGAAAAAAGTCGTGACAGGAGTCGATCAAGAGACAA
GCAGAATCGTAAAAATGAAGGAGGGCGTTCTTCGGGCGCCGTTAAAAGAC
CATCGACTCCGCCCGAACCTGAGGAACGTTTTTCAAAGAGACCAAGAAGA
CCCACGAAACAAAGGGAACGATATTCTCCGTCTTAAatggcggacgaaGC
AGGACGTCGATCCAACCTGGACCCTCAAATTACCATAAATGATGTTGTTA
ACAACGTGAAATCTGAAGGAATTTTCGACCAATTTCGAAAGGAATGTATT
GAAGAATTCGAAAATATGGAGAGCTTCAATCAGTTGAAACAGACCGTTGA
GAATCACGTGGcatcatttttgtcaaaaagaagATTCTCAGAATTACTAC
AGAAAAATCTACTGAGAACTGAGCTCAGGAATCATTTGAACAAatCTGAA
GTGTTATTGAATGGTATTCAACGTCTGGTTGATGAAGTTTTGAGTTTGAA
AGGTCATgggttttgtttgaaaattgacAAGCAAGTGGACCAGTTCTTAA
ATCCGCAGACGACCACACAAGTAGAACAAAACAGACATTCCGTTAACCTC
GTCCAGAATCTTGTCAATGAAACACCAGTTtctacagaagaaatttctCA
TCATATTACACCCAATAAGCCTTCGATAAACAATGAAACCTCAGCAAATA
TAGACatcaaagaagaaaatatttctgaaCCGCCTAAAGAAAGATCTTTG
TTGGAAGAGATTTCTCCTGATATAAATAATCAAAAGAATGTTGAACCCAA
TGATGTCGATTTACAGGAAATGGAAGTGGAGGAGGTTGGAATAGAGCTTG
GAGATACTAATAACGATATGATGGTGATTGAAAAACACACTGAACAGTCT
TTGGTGACTGAAAACCCTTCCATTAAGGATAATTCTCCTCAGCTCGAACA
ACACGAACACATTGGACCTGAACAGGAGGAGAAAATCGCTGAGACGGATG
AAAGCGTTGAGAAACGAAAGAATGAGTCGGAGTCtgagaaagtgaaaaat
aataaaaacgaAATTGAagacgaaaataaaaaagaggTTTTAGAAGAGAA
AAAGGAAATTAATCAGTCGAGAAATATTGAACGCTCCTCTGGTGATCAAG
AGGATGTTGATTCCGAACAAGAAGGTTCACAGACACCCGTTCAAGACGAA
AAAACTGTTATTGAGGATCGGGTGTCCGGTAAAAATAATCGATCATCTAA
TTCGTATTATACTTCTTTAGTAACAGAACCAATTAGTGATGATTCATCGA
GTAATAGCACACCTGATAGTTTTGAACCGATTTCTGAAGAGGACGATGAT
GAAAGTCAAGTAAGCGAACCCGAGGAGGGCGCCGATCGAAGGAAATCATA
CCGTAAACGCAATATACCGTTAAAATATCGTGACGAAGAGGGTGAGGAGG
ACGAAAAATCGGCGAAAGGAACCGATAAAAAACGACCAACGTTAAGAAAA
ACACGATCGAAAGACACTACTGAGGAAATTCATCGTGATAAATCGAATGA
TCGAGCATCTTCGAAGAAAAAAGAACGATCACATCGAAAAATCGAGAAGA
GTGATAGCGAAAAAAGTCGTGACAGGAGTCGATCAAGAGACAAGCAGAAT
CGTAAAAATGAAGGAGGGCGTTCTTCGGGCGCCGTTAAAAGACCATCGAC
TCCGCCCGAACCTGAGGAACGTTTTTCAAAGAGACCAAGAAGACCCACGA
AACAAAGGGAACGATATTCTCCGTCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007525XLOC_007525Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013465-proteinTCONS_00013465-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013465-exon-sc0000168-1491911889:288928..289305TCONS_00013465-exon-sc0000168-1491911889:288928..289305Clytia hemisphaericaexon
TCONS_00013465-exon-sc0000168-1510915933:288928..289305TCONS_00013465-exon-sc0000168-1510915933:288928..289305Clytia hemisphaericaexon
TCONS_00013465-exon-sc0000168-1575043694:288928..289305TCONS_00013465-exon-sc0000168-1575043694:288928..289305Clytia hemisphaericaexon
TCONS_00013465-exon-sc0000168-1491911889:301096..301220TCONS_00013465-exon-sc0000168-1491911889:301096..301220Clytia hemisphaericaexon
TCONS_00013465-exon-sc0000168-1510915933:301096..301220TCONS_00013465-exon-sc0000168-1510915933:301096..301220Clytia hemisphaericaexon
TCONS_00013465-exon-sc0000168-1575043694:301096..301220TCONS_00013465-exon-sc0000168-1575043694:301096..301220Clytia hemisphaericaexon
TCONS_00013465-exon-sc0000168-1491911889:301584..303118TCONS_00013465-exon-sc0000168-1491911889:301584..303118Clytia hemisphaericaexon
TCONS_00013465-exon-sc0000168-1510915933:301584..303118TCONS_00013465-exon-sc0000168-1510915933:301584..303118Clytia hemisphaericaexon
TCONS_00013465-exon-sc0000168-1575043694:301584..303118TCONS_00013465-exon-sc0000168-1575043694:301584..303118Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000168supercontigsc0000168:288928..303118 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
47.0192	44.2811	17.9215	14.5682	7.7952	6.30457	8.87805	8.80181	8.84306	6.68147	10.1208	10.3219	14.3712	18.8501	15.0678	16.371	11.0231	13.7908	7.19631	6.38683	14.7222	12.3495	53.8668	41.3093	22.8045	23.9398	8.72402	10.3324	28.8281	34.175
Blast
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BLAST of TCONS_00013465 vs. Swiss-Prot (Human)
Match: BD1L1 (Biorientation of chromosomes in cell division protein 1-like 1 OS=Homo sapiens GN=BOD1L1 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 2.528e-17
Identity = 42/111 (37.84%), Postives = 73/111 (65.77%), Query Frame = 1 
Query:  280 DPQITINDVVNNVKSEGIFDQFRKECIEEFENMESFNQLKQTVENHVASFLSKRRFSELLQKNLLRTELRNHLNKSEVLLNGIQRLVDEVLSLK-GHGFCLKIDKQVDQFL 609
            DPQ+ +  +VN++KS+G+FDQFR++C+ + +   ++  L+Q V+N VA+ L+   +S  L KN LR  +R  + KS +L +GI R++ +V+  K  H F  +++K V +FL
Sbjct:   50 DPQL-VAMIVNHLKSQGLFDQFRRDCLADVDTKPAYQNLRQRVDNFVANHLATHTWSPHLNKNQLRNNIRQQVLKSGMLESGIDRIISQVVDPKINHTFRPQVEKAVHEFL 159
The following BLAST results are available for this feature:
BLAST of TCONS_00013465 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BD1L12.528e-1737.84Biorientation of chromosomes in cell division prot... [more]
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