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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013511 ID=TCONS_00013511|Name=TCONS_00013511|organism=Clytia hemisphaerica|type=transcript|length=3088bp
ACGTTAGCTAAGCTGTCTGCAATGCAACGATAATTTCTTCAGAAAGTAGG
CGAGTGAAAGTTTACGCTTTTTCGGGCGAGTAGAAACGCAGAGCTGTATC
GTTAGGGTAGTGATAGTCTTCGaatttatggTGTCTAATCAGTTACTTTC
AAGAGAAGTTCTGCGAAACAGGAAATCACACATCCAACATGTTTACCTCA
TCAAGCGTATTTGAAAATCACACAGTTGAATTGAGAGAAGATTACGTTGA
AGTAAGAGAACAACCCTCTTTGCTTTCTTCTTACCTTCAACAGAATCAAA
TTGAAGTTGATAATGCGAGAGTACGAATGAACAGTAATCGCAATTTATac
ggaaaacaattcaaagcgAAGGAATTGTACGATGCTAAAGATAAAGAAAT
TACGAACGCAATCGCAGATAACGTGGCGATCCAAGATAAATTGGCAATGA
TTGGGAAGGAAGGTTCCTTGAAAGCTAAAGTgagaaagcaagaaaaagag
tTAAAACATGCTCGCAAAGAACGCATCTACTATGAAAATATGGTCAAACA
AAAGGACTACGCTATCAAACGTATACAAGCGAATCacgaagaaagaaaaa
tggctaTACTGGATAAAATTAGAGCTAAAGATGAGGAAATCCAGCAATTG
CGAAGGGAAATTGAGGTCCAACAAGTTGAACATGAAGCCAAAACTTTCCT
CACCAACCCGTCcaagaagaaaaagatgaaGCGATAATATTTGTGAAGTT
TTGCAGCAATCAATTTATAGACctatctttcatttttaaataCATATAAC
TGTTTTTAACTATgcgtaaaaatgtaaaaatcaataaatatatCATATAT
TCTATAAAAATCTCCACAATATAAAATGGATAAACTCAATTATCTCAAAG
ATCTAAGGAAATTTGAAATAGCTTCAAAATGAATGGAGAAGCAATTATTG
GCACCCCTATGTGACTGAACCGGTAGCTAAACTTCGTGTATCTTTGAAGA
TGAAAGGTATTTGTAAGGTGTGGGCAAGTTTATTTATCATTTCACGGACT
AAGCTTCTAAAAAAGTGGGTTGGTCGGTGTAAAAAATTGTAGAAGGCTAT
GAAAACTAAGAAACAGTCATCGAGTTATTAAAAATTGGCAGTCGAGAATT
AATTTGTTTTAACTCCGGTTATGCAAATTTAAGGTTCGGTCGGGCCAGAA
TATACAACTGATTGAATTTGTAGAAAAGTGTAGAAACACGAAAGATGCTC
TTAATTAGCCCGGTTACTACTTACCTATCGCAGTCCAAATAATGTGCAGT
TGACGCTTTAAGGCTAAATATTGGGAATAGTAGTCCATCCCAATCTCTCA
TTTAATCAGTTTTGAAGGAAACATTGAAAAACACATATCCTCAAGACATT
CTGATAAATGTGATCTCATTTCTCCTTCGTTGAAAATCATATTTCTCGCC
TCGATATCAAAAGCAAATGAGACACAGTATGCAATAGAATGCAAACAACA
GTTCCTCATGTGTTCATCCGGGTTTTCTTCAGGGCGTTCAATAAATAATA
TATTATCCCCTATCCCACTTTCGTTTAtcgttttcaaaacttgttGTATG
ATTGAAGCTTTTGAGCTTACTGTACAACAAAAGATATGAATGTTTCGACC
AATACGAGCTGATGTTGCCCAATGTCCTTCGACTCGATGTAATTGCAAGA
CTTTCTTGTCTGAACCGAAAATTTCAGTCGGATTTAGCGCTTCTAACAAC
TCTGGATCAGCGAATCCAGTCACGTCATGGAATTGATGACGTAGTATCTT
TTGTACGCACCGGATGATATCCATTGATAAGATATCGttgtttaaaatca
attcttggTGGTGCCTGTACAATTTAATGTCAAGTTCGGGATCATCCAAC
CAAACTTCAGATTCAGGAGATGTATTCGAGGTCTCAACTGTGTCAATAGA
GGGCCTCTCTTCGTCTGGTATCTTTTTCTTAGCTTCTGGCTCATTTCCAG
CTTTAATCGGTCCAGTAGAATCgttgatttttcgtttttcaccAATATTG
GGTTGTTCATCTGTTGGCATCTTTGAGAGTTCCAAATCAACATCATTCAA
GACAAATTGTAAATCTAGTTTCACTTTCTGTAACATGTCTCTATCGTCga
ctttttttatcacatttgTTAGTTCTTGGCAAACATTTTCACATGTGTTC
AAAATAGCTCCTTCTCCTTTATCCTCGCTAAGTTTATTTTGCGTTTCTCC
CGATTGTTGTGTTTCTGGAGATGTCGTTTGTGTTGATTGATCACCATCAC
GCACTATTACATTCCGGTTCGCCAGAAATTCGATGGTAGTTCTGTTAACA
ACCGGTAAAGGTAACACGACCTGTTTTGGAGGCATGACAAGTGGTAACAA
TTTGTTTACAGAGAGATTTGTAGTATCTTCTACTATAATTTCTTGCTCGA
TTTTCTTACTTGCGAGTCCTTTCTGTTTGTGAGTAGCATGAGATGGTGCT
TGGATGCTAATGAAAAGATTCTGTTCAACTTGCTCCTTATCGAAACAATC
GAAATCTAACGTGAACAGGGGGCTGTCGATGTAAAGCGAACTTAAAGTTT
CCCAGCCTTGGAATCCATGGAAAATAGCCACAAAATGAACACAAGGTAGT
TtatatttcaaccaatcaataCAACCGCATGATGGAAAGTTCAATTCATC
ACCAAACGATACCGAGTAAGAAGCACTAGCCTCTTTTTTCTCTTGAACAA
TGAATTGTCCAGGCTGCACCTGACTAACGGTGTACTCCATCGATCCGGCT
CGCTGTATTTGTTCGTTCAAATGTCTTGCTACACAAGCAGGTTTATTGAG
AAGGTACAGAGACGTTGGAGATGGACTTTTAACTGGAGTTAAACATTGTT
TGCGATAGTCGAAAATGTTCTTCTCGATATAACTGAAATGTGAATGAAAC
ACAAAATATGAAAGTGAGTCTGTGATTCTGGCATCCAAACTAACGGCAAG
AAAGCAATCATCCGCCATTCCGCCATAGCTAATTCTAATGAGAATTCATA
TTCAATATAATACTGTCAATTCTAACTGTTCTTCTCAT Run BLAST on NCBI transcript from alignment at sc0000168:394444..398230- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013511 ID=TCONS_00013511|Name=TCONS_00013511|organism=Clytia hemisphaerica|type=transcript|length=3787bp|location=Sequence derived from alignment at sc0000168:394444..398230- (Clytia hemisphaerica)
ACGTTAGCTAAGCTGTCTGCAATGCAACGATAATTTCTTCAGAAAGTAGG
CGAGTGAAAGTTTACGCTTTTTCGGGCGAGTAGAAACGCAGAGCTGTATC
GTTAGGGTAGTGATAGTCTTCGGTAAGTAACAAATTCAGATTTGAAAGTA
CGAGGCAGGGTAAATCCTCCCCGTGATCCTGTGTTTACTATCTTCGACAA
AAAGACATAACCCTCAGCCTCACGACGAAAGGTTTGTACCAACTTCCATT
CAGAAAATCTAAAAGTTGTGCGAGTGGCTCGGGGCGGGTACGAGATGGCC
CCTAGACTTACCGCACACTTCACTACCTAAATCTAAATAACGATTTCTTA
TATTTTAGAATTTATGGTGTCTAATCAGTTACTTTCAAGAGAAGTTCTGC
GAAACAGGAAATCACACATCCAACATGTTTACCTCATCAAGCGTATTTGA
AAATCACACAGTTGAATTGAGAGAAGATTACGTTGAAGTAAGAGAACAAC
CCTCTTTGCTTTCTTCTTACCTTCAACAGAATCAAATTGAAGTTGATAAT
GCGAGAGTACGAATGAACAGTAATCGCAATTTATACGGAAAACAATTCAA
AGCGAAGGAATTGTACGATGCTAAAGATAAAGGTAGGACCAATATTTTTT
ATTTTTCTCATTTCACAATATCATGGCTAAAAAATGGTTTACAGTAGCTA
TACGAAAAACTGTGAGCGCGGAAGTTGTGTGGGAAGGGAATCCCGCCCTG
GGAAGAATTTAGAATAAAACTTGACAACCGGAGCAACCCCTGGACCATCT
CCCAACCATCTATTTCAAAGCTCCGAAGGGGCTAGATGCAAACCTCCAGG
GTGGGAAATGAAGCCACTCTATTTCCCATCCAAAAAACGTAACCCGCGTG
TTTTTTAAACAAAATTTCTAAATCTGGGGCAAACCTAAGGCTTCACTTTT
CCTTACTCGAGAAAGGTTGAAGATTCTTCTCTAGCCCCTCGGGGCTTCAA
ACTCAATCCTCCCAACTTGTCTCTCTCACCACGAGATATAGTAAATGGCT
AGATAAAACAACTTTTATAGAAAAGCTCTTGTTTTTCATTTACAGAAATT
ACGAACGCAATCGCAGATAACGTGGCGATCCAAGATAAATTGGCAATGAT
TGGGAAGGAAGGTTCCTTGAAAGCTAAAGTGAGAAAGCAAGAAAAAGAGT
TAAAACATGCTCGCAAAGAACGCATCTACTATGAAAATATGGTCAAACAA
AAGGACTACGCTATCAAACGTATACAAGCGAATCACGAAGAAAGAAAAAT
GGCTATACTGGATAAAATTAGAGCTAAAGATGAGGAAATCCAGCAATTGC
GAAGGGAAATTGAGGTCCAACAAGTTGAACATGAAGCCAAAACTTTCCTC
ACCAACCCGTCCAAGAAGAAAAAGATGAAGCGATAATATTTGTGAAGTTT
TGCAGCAATCAATTTATAGACCTATCTTTCATTTTTAAATACATATAACT
GTTTTTAACTATGCGTAAAAATGTAAAAATCAATAAATATATCATATATT
CTATAAAAATCTCCACAATATAAAATGGATAAACTCAATTATCTCAAAGA
TCTAAGGAAATTTGAAATAGCTTCAAAATGAATGGAGAAGCAATTATTGG
CACCCCTATGTGACTGAACCGGTAGCTAAACTTCGTGTATCTTTGAAGAT
GAAAGGTATTTGTAAGGTGTGGGCAAGTTTATTTATCATTTCACGGACTA
AGCTTCTAAAAAAGTGGGTTGGTCGGTGTAAAAAATTGTAGAAGGCTATG
AAAACTAAGAAACAGTCATCGAGTTATTAAAAATTGGCAGTCGAGAATTA
ATTTGTTTTAACTCCGGTTATGCAAATTTAAGGTTCGGTCGGGCCAGAAT
ATACAACTGATTGAATTTGTAGAAAAGTGTAGAAACACGAAAGATGCTCT
TAATTAGCCCGGTTACTACTTACCTATCGCAGTCCAAATAATGTGCAGTT
GACGCTTTAAGGCTAAATATTGGGAATAGTAGTCCATCCCAATCTCTCAT
TTAATCAGTTTTGAAGGAAACATTGAAAAACACATATCCTCAAGACATTC
TGATAAATGTGATCTCATTTCTCCTTCGTTGAAAATCATATTTCTCGCCT
CGATATCAAAAGCAAATGAGACACAGTATGCAATAGAATGCAAACAACAG
TTCCTCATGTGTTCATCCGGGTTTTCTTCAGGGCGTTCAATAAATAATAT
ATTATCCCCTATCCCACTTTCGTTTATCGTTTTCAAAACTTGTTGTATGA
TTGAAGCTTTTGAGCTTACTGTACAACAAAAGATATGAATGTTTCGACCA
ATACGAGCTGATGTTGCCCAATGTCCTTCGACTCGATGTAATTGCAAGAC
TTTCTTGTCTGAACCGAAAATTTCAGTCGGATTTAGCGCTTCTAACAACT
CTGGATCAGCGAATCCAGTCACGTCATGGAATTGATGACGTAGTATCTTT
TGTACGCACCGGATGATATCCATTGATAAGATATCGTTGTTTAAAATCAA
TTCTTGGTGGTGCCTGTACAATTTAATGTCAAGTTCGGGATCATCCAACC
AAACTTCAGATTCAGGAGATGTATTCGAGGTCTCAACTGTGTCAATAGAG
GGCCTCTCTTCGTCTGGTATCTTTTTCTTAGCTTCTGGCTCATTTCCAGC
TTTAATCGGTCCAGTAGAATCGTTGATTTTTCGTTTTTCACCAATATTGG
GTTGTTCATCTGTTGGCATCTTTGAGAGTTCCAAATCAACATCATTCAAG
ACAAATTGTAAATCTAGTTTCACTTTCTGTAACATGTCTCTATCGTCGAC
TTTTTTTATCACATTTGTTAGTTCTTGGCAAACATTTTCACATGTGTTCA
AAATAGCTCCTTCTCCTTTATCCTCGCTAAGTTTATTTTGCGTTTCTCCC
GATTGTTGTGTTTCTGGAGATGTCGTTTGTGTTGATTGATCACCATCACG
CACTATTACATTCCGGTTCGCCAGAAATTCGATGGTAGTTCTGTTAACAA
CCGGTAAAGGTAACACGACCTGTTTTGGAGGCATGACAAGTGGTAACAAT
TTGTTTACAGAGAGATTTGTAGTATCTTCTACTATAATTTCTTGCTCGAT
TTTCTTACTTGCGAGTCCTTTCTGTTTGTGAGTAGCATGAGATGGTGCTT
GGATGCTAATGAAAAGATTCTGTTCAACTTGCTCCTTATCGAAACAATCG
AAATCTAACGTGAACAGGGGGCTGTCGATGTAAAGCGAACTTAAAGTTTC
CCAGCCTTGGAATCCATGGAAAATAGCCACAAAATGAACACAAGGTAGTT
TATATTTCAACCAATCAATACAACCGCATGATGGAAAGTTCAATTCATCA
CCAAACGATACCGAGTAAGAAGCACTAGCCTCTTTTTTCTCTTGAACAAT
GAATTGTCCAGGCTGCACCTGACTAACGGTGTACTCCATCGATCCGGCTC
GCTGTATTTGTTCGTTCAAATGTCTTGCTACACAAGCAGGTTTATTGAGA
AGGTACAGAGACGTTGGAGATGGACTTTTAACTGGAGTTAAACATTGTTT
GCGATAGTCGAAAATGTTCTTCTCGATATAACTGAAATGTGAATGAAACA
CAAAATATGAAAGTGAGTCTGTGATTCTGGCATCCAAACTAACGGCAAGA
AAGCAATCATCCGCCATTCCGCCATAGCTAATTCTAATGAGAATTCATAT
TCAATATAATACTGTCAATTCTAACTGTTCTTCTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013511-exon-sc0000168-1575043694:398109..398230 | TCONS_00013511-exon-sc0000168-1575043694:398109..398230 | Clytia hemisphaerica | exon |
| TCONS_00013511-exon-sc0000168-1575043694:397599..397872 | TCONS_00013511-exon-sc0000168-1575043694:397599..397872 | Clytia hemisphaerica | exon |
| TCONS_00013511-exon-sc0000168-1575043694:394444..397135 | TCONS_00013511-exon-sc0000168-1575043694:394444..397135 | Clytia hemisphaerica | exon |
| TCONS_00013511-exon-sc0000168-1510915933:398109..398230 | TCONS_00013511-exon-sc0000168-1510915933:398109..398230 | Clytia hemisphaerica | exon |
| TCONS_00013511-exon-sc0000168-1510915933:397599..397872 | TCONS_00013511-exon-sc0000168-1510915933:397599..397872 | Clytia hemisphaerica | exon |
| TCONS_00013511-exon-sc0000168-1510915933:394444..397135 | TCONS_00013511-exon-sc0000168-1510915933:394444..397135 | Clytia hemisphaerica | exon |
| TCONS_00013511-exon-sc0000168-1491911889:398109..398230 | TCONS_00013511-exon-sc0000168-1491911889:398109..398230 | Clytia hemisphaerica | exon |
| TCONS_00013511-exon-sc0000168-1491911889:397599..397872 | TCONS_00013511-exon-sc0000168-1491911889:397599..397872 | Clytia hemisphaerica | exon |
| TCONS_00013511-exon-sc0000168-1491911889:394444..397135 | TCONS_00013511-exon-sc0000168-1491911889:394444..397135 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000168 | supercontig | sc0000168:394444..398230 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR007527 | Znf_SWIM |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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