TCONS_00013513 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013513
Unique NameTCONS_00013513
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length762

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013513 ID=TCONS_00013513|Name=TCONS_00013513|organism=Clytia hemisphaerica|type=transcript|length=762bp
TTAGATTCGACATTTTGAACGAAAACAATCCTTTTACACTGGTGCTATGA
CTAGCCTGAGTCTGGATGCAGTACGAACGATTGATCAGAAGCTAGTGCTG
ATACCTATTTGCTACATCATGTTGAGGATCTGGGGAACAATTCGTTTTCT
GATGTATGTCCTTGGAAAGGAGCAGCATGGCTCTCTTCCTTTCCTGATGA
TAATGCAGGCAATTGGTGACAATCTGGTGGGGTTTTgtaattgtattttc
ttttgtttcttgaCACCAAAAGTACGAAATCATATCAAGCAATCGAAACT
TTGTACTCTTCACTTTAAGAAGAAGGAAACTGAAACTCATCATCCAGTGA
GTGAAAGAACTAATCTCATTTGAGCTCTGGCCGTCTAAAAGAATCTTGAT
TTGAAGGAAGTAAATCGCATCAAATTCATCTTCGTTTGTCTGGCTATTGG
ACATGATTGAAATATCACTCTACGAAACTACGGATTTTCTCTGGTTATAT
CATTACTGTTTGCTTTGataccatggcgttctaaagttACTTTAGAACGC
CGTGCTTGATactgaaatttaattaaaaatgcTGCCATGTATTGTTCTAA
AATAGTAGCTGTGATTCTTTTACCATAAACTCACTCAAATGGAAAGCTGC
TGTGGATTGTGCATATAATTAATTAAATTTACCACTTTTAAGTCTGTTCT
AGACTAGTTTCATTTCTGTAACTTAAATAACTAATGCTTTTGAGGCATCG
TTTCAAAGACAG
Run BLAST on NCBI

transcript from alignment at sc0000168:444826..446634-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013513 ID=TCONS_00013513|Name=TCONS_00013513|organism=Clytia hemisphaerica|type=transcript|length=1809bp|location=Sequence derived from alignment at sc0000168:444826..446634- (Clytia hemisphaerica)
TTAGATTCGACATTTTGAACGAAAACAATCCTTTTACACTGGTGCTATGA
CTAGCCTGAGTCTGGATGCAGTACGAACGATTGATCAGAAGCTAGTGCTG
ATACCTATTTGCTACATCATGTTGAGGATCTGGGGAACAATTCGTTTTCT
GATGTATGTCCTTGGAAAGGAGCAGCATGGCTCTCTTCCTTTCCTGATGA
TAATGCAGGTAATTTTTTATCCACTTGTCTTTTTATAAGAACCATCAACT
TCTGAATAAGCCTCAGTTATTCTTATATTTTCGTGATTTTTGGGCTTTCG
TTATGTTTTTTTGATTAATGCTTTTTGTACTGATTTAAGAGTTCGTATTC
TGAAAATTGAAATCACATTTTGTTAATGTAACCTTAATATTTATTGGATA
AGCCAGTTTTCTGTAAAATTTTCTTTTAAAAAATAAGTGTGTTACTCAAG
ATTATAGTTCCAACGAGAGAGCCCGAAAAACCTCCATAATGTACAGGGAT
CCTTTCAACTTCGTGTTCCGTGTTCTTCGTGCTCGCAGAGCTTTTGGTTA
CACGAGGAAAATAAGTACGTGGCCGCTATTTGGGGTTCAGTGTTATCAAG
AGTGCAATTGCCAAAATAAAGTTTTTCGTTTCACCTTTTTTAGGCAATTG
GTGACAATCTGGTGGGGTTTTGTAATTGTATTTTCTTTTGTTTCTTGACA
CCAAAAGTACGAAATCATATCAAGCAATCGAAACTTTGTACTCTTCACTT
TAAGAAGAAGGAAACTGAAACTCATCATCCAGTGAGTGAAAGAACTAATC
TCATTTGGTAAACACTTATTTCATCATTTTCTTAACTTATACACTTATCA
ACCCTGTAAAGCGTTAGGAGACTTGGGTCCAGTTTACCAAGAAGGAAATG
GCGTCAAAATTCCCGAACTCGTTACAATGAAATTCTCACAGACACAGGAT
TCTGACGTCATTTCCTTGGGAATTAATCACCAGTCTCCTCAAAACCCGAC
CGCGTCGTCAAGAAGGGCTGGTGAGTGTATTCTAAAGGTTTAATGAGTTT
TTGAATTTTTCGCCTATCACCAGAAATCCAAACAAAGCTTCATCCTTTCT
GTGCCTGACCTGATTTACAGCAAAAAAAAACACGGATATTAAGTTCAAAC
TAAAAATATATGAATCAAACGCCCTGATCAGGAGCTAGAACTCAGACCTC
TGTACCTTATACGCAAGGTGTTAGCTATGAACGAAGTATTTGGTATACTA
TAGTCGTGAATAACTCGATTGATTTTTACATGAATTTTATCATATTTTTA
TAGAGCTCTGGCCGTCTAAAAGAATCTTGATTTGAAGGAAGTAAATCGCA
TCAAATTCATCTTTGTTTGTCTAGCTATTAGACATGATTGAAATATAAGT
GAATCACATCAAATTCATCTTCGTTTGTCTGGCTATTGGACATGATTGAA
ATATAAGAGAATCGCATCAAATTCATCTTTGTTTGTCTGGCTATTGGACA
TGATTGAAATATCACTCTACGAAACTACGGATTTTCTCTGGTTATATCAT
TACTGTTTGCTTTGATACCATGGCGTTCTAAAGTTACTTTAGAACGCCGT
GCTTGATACTGAAATTTAATTAAAAATGCTGCCATGTATTGTTCTAAAAT
AGTAGCTGTGATTCTTTTACCATAAACTCACTCAAATGGAAAGCTGCTGT
GGATTGTGCATATAATTAATTAAATTTACCACTTTTAAGTCTGTTCTAGA
CTAGTTTCATTTCTGTAACTTAAATAACTAATGCTTTTGAGGCATCGTTT
CAAAGACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007546XLOC_007546Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013513-exon-sc0000168-1575043694:446427..446634TCONS_00013513-exon-sc0000168-1575043694:446427..446634Clytia hemisphaericaexon
TCONS_00013513-exon-sc0000168-1575043694:445828..445991TCONS_00013513-exon-sc0000168-1575043694:445828..445991Clytia hemisphaericaexon
TCONS_00013513-exon-sc0000168-1575043694:445286..445331TCONS_00013513-exon-sc0000168-1575043694:445286..445331Clytia hemisphaericaexon
TCONS_00013513-exon-sc0000168-1575043694:445194..445227TCONS_00013513-exon-sc0000168-1575043694:445194..445227Clytia hemisphaericaexon
TCONS_00013513-exon-sc0000168-1575043694:444826..445135TCONS_00013513-exon-sc0000168-1575043694:444826..445135Clytia hemisphaericaexon
TCONS_00013513-exon-sc0000168-1510915933:446427..446634TCONS_00013513-exon-sc0000168-1510915933:446427..446634Clytia hemisphaericaexon
TCONS_00013513-exon-sc0000168-1510915933:445828..445991TCONS_00013513-exon-sc0000168-1510915933:445828..445991Clytia hemisphaericaexon
TCONS_00013513-exon-sc0000168-1510915933:445286..445331TCONS_00013513-exon-sc0000168-1510915933:445286..445331Clytia hemisphaericaexon
TCONS_00013513-exon-sc0000168-1510915933:445194..445227TCONS_00013513-exon-sc0000168-1510915933:445194..445227Clytia hemisphaericaexon
TCONS_00013513-exon-sc0000168-1510915933:444826..445135TCONS_00013513-exon-sc0000168-1510915933:444826..445135Clytia hemisphaericaexon
TCONS_00013513-exon-sc0000168-1491911889:446427..446634TCONS_00013513-exon-sc0000168-1491911889:446427..446634Clytia hemisphaericaexon
TCONS_00013513-exon-sc0000168-1491911889:445828..445991TCONS_00013513-exon-sc0000168-1491911889:445828..445991Clytia hemisphaericaexon
TCONS_00013513-exon-sc0000168-1491911889:445286..445331TCONS_00013513-exon-sc0000168-1491911889:445286..445331Clytia hemisphaericaexon
TCONS_00013513-exon-sc0000168-1491911889:445194..445227TCONS_00013513-exon-sc0000168-1491911889:445194..445227Clytia hemisphaericaexon
TCONS_00013513-exon-sc0000168-1491911889:444826..445135TCONS_00013513-exon-sc0000168-1491911889:444826..445135Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000168supercontigsc0000168:444826..446634 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.51324	0.0771937	0.115099	0.234657	0.25955	0	0.522776	1.00384	0.521873	0.803486	0.308972	0.541616	0.999944	1.00141	1.47232	2.95753	1.78278	1.98128	4.88823	2.57681	2.54318	2.17868	2.08122	1.56184	1.08007	1.86385	0.735753	1.04998	3.10367	2.45345
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013513 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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