TCONS_00013532 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013532
Unique NameTCONS_00013532
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length553

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013532 ID=TCONS_00013532|Name=TCONS_00013532|organism=Clytia hemisphaerica|type=transcript|length=553bp
GCTATATTCTGAAACGCCGTTACATTGGGCACAAAATTTGTTCTTGTAAA
GATATTTATCATTCCCGAGGACAGGCATTTGGTCAACACGATCATTTGAA
GAACTGTTCAAACATTGTTCAATGTCAGTCTGTCTTGCACCAGAGAGACA
AGAATCTACCATGATATAATATTCATCAATCTCCTTTTCGAAAGGAAATA
ACGGTAAACAGGTCTGTTGCTTAGACGACGATTCCATCAATGTTTGTTGG
TAACTTATGATATTCTGAGAATCGCTTTGGTTATTGAATGCAAACTGGCT
CCATAAAAAGTCAATACAACAATCACCAGAACTTTGGCAACCAGCATTGC
ATTGACATTCACCTTTCTCTAACCATCTTTTACATTGAAAACCAGTCCAT
TGTACTGAAGAAGAGTCGATTCCATTCGtatccaaaaaaattgataacgG
AAAAGGTTTTTCGTTCGGTTCAAGTTCCATTACAGTAATATTCATACTTT
CGCTACAAAGTTTCACGTCGTTCATTGAAACTTCTTGCCATAGCCAGAAG
ATC
Run BLAST on NCBI

protein sequence of TCONS_00013532-protein

>TCONS_00013532-protein ID=TCONS_00013532-protein|Name=TCONS_00013532-protein|organism=Clytia hemisphaerica|type=polypeptide|length=184bp
IFWLWQEVSMNDVKLCSESMNITVMELEPNEKPFPLSIFLDTNGIDSSSV
QWTGFQCKRWLEKGECQCNAGCQSSGDCCIDFLWSQFAFNNQSDSQNIIS
YQQTLMESSSKQQTCLPLFPFEKEIDEYYIMVDSCLSGARQTDIEQCLNS
SSNDRVDQMPVLGNDKYLYKNKFCAQCNGVSEYS
Run BLAST on NCBI

transcript from alignment at sc0000168:323263..323815

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013532 ID=TCONS_00013532|Name=TCONS_00013532|organism=Clytia hemisphaerica|type=transcript|length=553bp|location=Sequence derived from alignment at sc0000168:323263..323815 (Clytia hemisphaerica)
GATCTTCTGGCTATGGCAAGAAGTTTCAATGAACGACGTGAAACTTTGTA
GCGAAAGTATGAATATTACTGTAATGGAACTTGAACCGAACGAAAAACCT
TTTCcgttatcaatttttttggataCGAATGGAATCGACTCTTCTTCAGT
ACAATGGACTGGTTTTCAATGTAAAAGATGGTTAGAGAAAGGTGAATGTC
AATGCAATGCTGGTTGCCAAAGTTCTGGTGATTGTTGTATTGACTTTTTA
TGGAGCCAGTTTGCATTCAATAACCAAAGCGATTCTCAGAATATCATAAG
TTACCAACAAACATTGATGGAATCGTCGTCTAAGCAACAGACCTGTTTAC
CGTTATTTCCTTTCGAAAAGGAGATTGATGAATATTATATCATGGTAGAT
TCTTGTCTCTCTGGTGCAAGACAGACTGACATTGAACAATGTTTGAACAG
TTCTTCAAATGATCGTGTTGACCAAATGCCTGTCCTCGGGAATGATAAAT
ATCTTTACAAGAACAAATTTTGTGCCCAATGTAACGGCGTTTCAGAATAT
AGC

Coding sequence (CDS) from alignment at sc0000168:323263..323815

>TCONS_00013532 ID=TCONS_00013532|Name=TCONS_00013532|organism=Clytia hemisphaerica|type=CDS|length=552bp|location=Sequence derived from alignment at sc0000168:323263..323815 (Clytia hemisphaerica)
ATCTTCTGGCTATGGCAAGAAGTTTCAATGAACGACGTGAAACTTTGTAG
CGAAAGTATGAATATTACTGTAATGGAACTTGAACCGAACGAAAAACCTT
TTCcgttatcaatttttttggataCGAATGGAATCGACTCTTCTTCAGTA
CAATGGACTGGTTTTCAATGTAAAAGATGGTTAGAGAAAGGTGAATGTCA
ATGCAATGCTGGTTGCCAAAGTTCTGGTGATTGTTGTATTGACTTTTTAT
GGAGCCAGTTTGCATTCAATAACCAAAGCGATTCTCAGAATATCATAAGT
TACCAACAAACATTGATGGAATCGTCGTCTAAGCAACAGACCTGTTTACC
GTTATTTCCTTTCGAAAAGGAGATTGATGAATATTATATCATGGTAGATT
CTTGTCTCTCTGGTGCAAGACAGACTGACATTGAACAATGTTTGAACAGT
TCTTCAAATGATCGTGTTGACCAAATGCCTGTCCTCGGGAATGATAAATA
TCTTTACAAGAACAAATTTTGTGCCCAATGTAACGGCGTTTCAGAATATA
GC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007559XLOC_007559Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013532-exon-sc0000168-1491911889:323263..323815TCONS_00013532-exon-sc0000168-1491911889:323263..323815Clytia hemisphaericaexon
TCONS_00013532-exon-sc0000168-1510915933:323263..323815TCONS_00013532-exon-sc0000168-1510915933:323263..323815Clytia hemisphaericaexon
TCONS_00013532-exon-sc0000168-1575043694:323263..323815TCONS_00013532-exon-sc0000168-1575043694:323263..323815Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013532-proteinTCONS_00013532-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000168supercontigsc0000168:323263..323815 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.309399	0.301713	0.116772	0.228487	0.278161	0.109903	0.265187	0.124133	0.260725	0.2153	0.41795	0.412116	2.12631	1.99449	0.527061	1.00554	0.232265	0.158709	2.74082	4.01529	0	0.729561	0.473001	0.215013	0.775105	0.494116	0	0.150923	0.11447	0.116626
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001212Somatomedin_B_dom
Vocabulary: Molecular Function
TermDefinition
GO:0030247polysaccharide binding
GO:0005044scavenger receptor activity
Vocabulary: Biological Process
TermDefinition
GO:0006955immune response
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006955 immune response
molecular_function GO:0030247 polysaccharide binding
molecular_function GO:0005044 scavenger receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013532 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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