TCONS_00013539 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013539
Unique NameTCONS_00013539
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length878

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013539 ID=TCONS_00013539|Name=TCONS_00013539|organism=Clytia hemisphaerica|type=transcript|length=878bp
ttccttaaatgccatgacagaaaatacaatggaaaaactattaaaatcga
atccctcgtgagcaaatgccaaattacaaatgccagttggtctaaacgca
gccggTATGCTATTCTATATTTTCATATCAGATCTGTGATTTCTCAAGGG
AAATCATTCCACATAGtaaatttgttgaattttatTGATTAAAGACAAGA
AATGTACacattagtgaggttaagtaaatcggtaaaatcacgatgACGGA
CGAAAAATGAAGAGGCTAGTGAGTatcagccaatcaaatgtcgtattctc
actagcctattacatttttcgtccgtcgtcgtgattatccttgtatgctt
aacctcagtattgGTTTGACGTTGAGGGAAGGAAGTAAgtgacttttgaa
atttttctcgaaTGGAAGTTCCCCCATTGTAAGATAAATAGAAGAGAAAA
TTTATGGAGAATTGCAAGACTCgatttcaatatatttttttcactaCTGT
AGAATATTGTTCGAATTAAAAGGTCTTTTGAAGCTTGCGTGCGGTAATTT
TTAGAGTCTTGATATTTCTTTGGTTCTGTTTTAATTTAAACTTAGAAAGA
ATATCAAAGAAAATGAATTCTTTATGTGAGGGCATTCGTTTCAATAAATT
TCGGTTATTGTTGAGCAattttttaaaggcttttttttttcttttgctga
cTAATTAGAGGGAAGATTTTGAACGCAAACATTAGTTTACAAGAGTTTTt
atttatctttaaaaaaattatagttAGGTACTAATTAACATTACCAATAT
TTGTTATAATTTTTCAATACAAGAGTGCCCACTGTTcctcatttttcaaa
agaatcaaagaaatcaaacaaaatattt
Run BLAST on NCBI

transcript from alignment at sc0000168:437646..438523

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013539 ID=TCONS_00013539|Name=TCONS_00013539|organism=Clytia hemisphaerica|type=transcript|length=878bp|location=Sequence derived from alignment at sc0000168:437646..438523 (Clytia hemisphaerica)
aaatattttgtttgatttctttgattcttttgaaaaatgaggAACAGTGG
GCACTCTTGTATTGAAAAATTATAACAAATATTGGTAATGTTAATTAGTA
CCTaactataatttttttaaagataaataAAAACTCTTGTAAACTAATGT
TTGCGTTCAAAATCTTCCCTCTAATTAgtcagcaaaagaaaaaaaaaagc
ctttaaaaaatTGCTCAACAATAACCGAAATTTATTGAAACGAATGCCCT
CACATAAAGAATTCATTTTCTTTGATATTCTTTCTAAGTTTAAATTAAAA
CAGAACCAAAGAAATATCAAGACTCTAAAAATTACCGCACGCAAGCTTCA
AAAGACCTTTTAATTCGAACAATATTCTACAGtagtgaaaaaaatatatt
gaaatcGAGTCTTGCAATTCTCCATAAATTTTCTCTTCTATTTATCTTAC
AATGGGGGAACTTCCAttcgagaaaaatttcaaaagtcacTTACTTCCTT
CCCTCAACGTCAAACcaatactgaggttaagcatacaaggataatcacga
cgacggacgaaaaatgtaataggctagtgagaatacgacatttgattggc
tgatACTCACTAGCCTCTTCATTTTTCGTCCGTcatcgtgattttaccga
tttacttaacctcactaatgtGTACATTTCTTGTCTTTAATCAataaaat
tcaacaaatttaCTATGTGGAATGATTTCCCTTGAGAAATCACAGATCTG
ATATGAAAATATAGAATAGCATAccggctgcgtttagaccaactggcatt
tgtaatttggcatttgctcacgagggattcgattttaatagtttttccat
tgtattttctgtcatggcatttaaggaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007566XLOC_007566Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013539-exon-sc0000168-1491911889:437646..438523TCONS_00013539-exon-sc0000168-1491911889:437646..438523Clytia hemisphaericaexon
TCONS_00013539-exon-sc0000168-1510915933:437646..438523TCONS_00013539-exon-sc0000168-1510915933:437646..438523Clytia hemisphaericaexon
TCONS_00013539-exon-sc0000168-1575043694:437646..438523TCONS_00013539-exon-sc0000168-1575043694:437646..438523Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000168supercontigsc0000168:437646..438523 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.228112	0.138733	0.0609498	0.0774241	0	0.0682227	0.0640824	0.0938354	0.0587502	0	0	0.106992	0.0371148	0	0.0324857	0	0.0825166	0	0	0.0529006	0.156893	0	0.118743	0.284685	0.203441	0	0	0.0618609	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013539 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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