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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013556 ID=TCONS_00013556|Name=TCONS_00013556|organism=Clytia hemisphaerica|type=transcript|length=3084bpRun BLAST on NCBI protein sequence of TCONS_00013556-protein >TCONS_00013556-protein ID=TCONS_00013556-protein|Name=TCONS_00013556-protein|organism=Clytia hemisphaerica|type=polypeptide|length=755bp MSSNPSFRMDENGENEKKKVPEVEYPLKRSFSERNGYKFMLCACVLVFVVRun BLAST on NCBI transcript from alignment at sc0000170:205326..257454+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013556 ID=TCONS_00013556|Name=TCONS_00013556|organism=Clytia hemisphaerica|type=transcript|length=52129bp|location=Sequence derived from alignment at sc0000170:205326..257454+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000170:205326..257454+ >TCONS_00013556 ID=TCONS_00013556|Name=TCONS_00013556|organism=Clytia hemisphaerica|type=CDS|length=47628bp|location=Sequence derived from alignment at sc0000170:205326..257454+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00013556 vs. Swiss-Prot (Human)
Match: ECE2 (Endothelin-converting enzyme 2 OS=Homo sapiens GN=ECE2 PE=1 SV=4) HSP 1 Score: 508.834 bits (1309), Expect = 8.405e-164 Identity = 256/681 (37.59%), Postives = 405/681 (59.47%), Query Frame = 2
Query: 395 VHIASRIIDTMDDKVDPCDNFYQYSCGNWLKKTPIPDSRTRYSRFEKLSEKNSIVLKQILNDLIKKKRNASTPVLQDAANYYATCMDTKGIDVVGDQPMKNLVQKLGSWPVTDPSFNGSNWDA---MEALVTVHKNISQAPVFNLYVSGDIKNSNENVLVFDQSGIMMDRESYLQNSTFHKRHRDAYRKMMKAVAKEMGATEVSLK-YMDDVFEFEKALAKITMSVLQRRDYRLIYSRMTLKEFAQKTQIPMDWMLKFVNKIFSETGSKVVETEEIVSFNTKYVGDAYRLFMALDKKVQASYVMWNAVKVMAPVVLGKYQDIMDEYFMTAFGTKDRQ-PRWETCIGSTLGAFGYALSRPFVEEVYDKTAKEMSTEMIHAIKEVFEENLNYMDWMDQXXXXXXXXXXXXILENIGYPDFILNNTALEAEYKGLIVTKGQHFLNYMERRKY--KNLKNYLKRGKPVDKSQWGILPTTVNAYYAPTENKIGFPAGILQWPFYDKSAPRAVSYGAIGMVVGHEITHGFDDQGKDFTIAGNFDTWWTNKSTTEFKKRSKCFIDQYSKFKLFGRNMKGQQTLGEDLADNGGLRQSLQAYRNWVAIHGEEKQLPGLDLTPDQLYFLAFAQVWCTAYRESAAINQIENGVHSLSMFRVIGTLQNNEDFSKAYKCPVGSTMNPSKKCRVW 2416
+ +A +I++++D V PC++FYQ+SCG W+++ P+PD R+R++ F L ++N +LK +L + N+S+ Q +Y +C+ + I+ +G QP+++L++K+G W +T P WD ME L V P F +Y+S D K+SN NV+ DQSG+ + Y N T +++ AY M+ + +G S + M V E E LA IT+ QRRD IY +M++ E Q MDW L+F++ + S ++ ++E +V + Y+ L + + +Y++WN V+ + +++ ++ T +GTK PRW+TCI +T A G+AL FV+ +D+ +KE++ MI I+ FEE L + WMD+KT+ AK KA I + IG+PDFIL L+ Y G +++ F N + + K + + L+ KP + QW + P TVNAYY PT+N+I FPAGILQ PFY ++ P+A+++G IG+V+GHE+TH FDDQG+++ GN WW N+S F+ + C +QY+++++ G + G+QTLGE++ADNGGL+ + AY+ W+ HGEE+QLP + LT QL+F+ FAQVWC+ ++ + HS + FRV+GTL N+ DF + + CPVGS MNP + C VW
Sbjct: 218 IRVAGKILESLDRGVSPCEDFYQFSCGGWIRRNPLPDGRSRWNTFNSLWDQNQAILKHLLEN---TTFNSSSEAEQKTQRFYLSCLQVERIEELGAQPLRDLIEKIGGWNITGP------WDQDNFMEVLKAVAGTYRATPFFTVYISADSKSSNSNVIQVDQSGLFLPSRDYYLNRTANEKVLTAYLDYMEELGMLLGGRPTSTREQMQQVLELEIQLANITVPQDQRRDEEKIYHKMSISEL-QALAPSMDW-LEFLSFLLSPL--ELSDSEPVVVYGMDYLQQVSELINRTEPSILNNYLIWNLVQKTTSSLDRRFESAQEKLLETLYGTKKSCVPRWQTCISNTDDALGFALGSLFVKATFDRQSKEIAEGMISEIRTAFEEALGQLVWMDEKTRQAAKEKADAIYDMIGFPDFILEPKELDDVYDGYEISEDSFFQNMLNLYNFSAKVMADQLR--KPPSRDQWSMTPQTVNAYYLPTKNEIVFPAGILQAPFYARNHPKALNFGGIGVVMGHELTHAFDDQGREYDKEGNLRPWWQNESLAAFRNHTACMEEQYNQYQVNGERLNGRQTLGENIADNGGLKAAYNAYKAWLRKHGEEQQLPAVGLTNHQLFFVGFAQVWCSVRTPESSHEGLVTDPHSPARFRVLGTLSNSRDFLRHFGCPVGSPMNPGQLCEVW 883 The following BLAST results are available for this feature:
BLAST of TCONS_00013556 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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