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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013606 ID=TCONS_00013606|Name=TCONS_00013606|organism=Clytia hemisphaerica|type=transcript|length=3100bpRun BLAST on NCBI protein sequence of TCONS_00013606-protein >TCONS_00013606-protein ID=TCONS_00013606-protein|Name=TCONS_00013606-protein|organism=Clytia hemisphaerica|type=polypeptide|length=498bp MKEIKTITCIGAGYVGGPTCSVIAQKCPGVNVHVVDLSQERIDAWNSDSLRun BLAST on NCBI transcript from alignment at sc0000170:90526..111784- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013606 ID=TCONS_00013606|Name=TCONS_00013606|organism=Clytia hemisphaerica|type=transcript|length=21259bp|location=Sequence derived from alignment at sc0000170:90526..111784- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000170:90526..111784- >TCONS_00013606 ID=TCONS_00013606|Name=TCONS_00013606|organism=Clytia hemisphaerica|type=CDS|length=17964bp|location=Sequence derived from alignment at sc0000170:90526..111784- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00013606 vs. Swiss-Prot (Human)
Match: UGDH (UDP-glucose 6-dehydrogenase OS=Homo sapiens GN=UGDH PE=1 SV=1) HSP 1 Score: 682.174 bits (1759), Expect = 0.000e+0 Identity = 330/476 (69.33%), Postives = 388/476 (81.51%), Query Frame = 2
Query: 596 MKEIKTITCIGAGYVGGPTCSVIAQKCPGVNVHVVDLSQERIDAWNSDSLPIYEPGLKEVVEETRGKNLFFSTKIDEAINEADLIFISVNTPTKNFGLGKGRAPDLKYIESAARNIANVARENKIVVEKSTVPVKAAESISRILKCNRKAGIRYQVLSNPEFLAEGTAIKDLLNPDRILIGGEQTPEGKEAVDALASIYAQWIDDERIIKTNTWSSELSKLAANAFLAQRVSSINSISAVCEATGADVDEVAKAIGLDNRIGKKFLKAGVGFGGSCFQKDVLNLVYLCEALNLSEVGAYWHQVISMNEYQKKRFASLIVKCLFNTVTGKKISILGFAFKKDTGDTRESPAIYVTKYLLEEGAKISIYDPKVKAKQIMMDLTDPQLGLDPEKVHKLVTIEKDPYECCQKSHAFAVCTEWNEFQELDYARIYQSMLKPAFAFDGRLILD--HDKLVRIGFQVEAIGKCVHS--LPDSP 2011
M EIK I CIGAGYVGGPTCSVIA CP + V VVD+++ RI+AWNS +LPIYEPGLKEVVE RGKNLFFST ID+AI EADL+FISVNTPTK +G+GKGRA DLKYIE+ AR I + KIV EKSTVPV+AAESI RI N K + QVLSNPEFLAEGTAIKDL NPDR+LIGG++TPEG+ AV AL ++Y W+ E+I+ TNTWSSELSKLAANAFLAQR+SSINSISA+CEATGADV+EVA AIG+D RIG KFLKA VGFGGSCFQKDVLNLVYLCEALNL EV YW QVI MN+YQ++RFAS I+ LFNTVT KKI+ILGFAFKKDTGDTRES +IY++KYL++EGA + IYDPKV +QI++DL+ P + D ++V +LVTI KDPYE C +HA +CTEW+ F+ELDY RI++ MLKPAF FDGR +LD H++L IGFQ+E IGK V S +P +P
Sbjct: 1 MFEIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSED-DQVSRLVTISKDPYEACDGAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGKKVSSKRIPYAP 475 The following BLAST results are available for this feature:
BLAST of TCONS_00013606 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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