TCONS_00013616 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013616
Unique NameTCONS_00013616
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1757

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013616 ID=TCONS_00013616|Name=TCONS_00013616|organism=Clytia hemisphaerica|type=transcript|length=1757bp
TGGCGattgaaaatcatcaaactatcatcaaaaatcaatcaggaatttaA
AGAAATATAAATTGTGATTCAAGAAGAGGAAGCTGTACAAAATGAAGCTG
CTTTGGATTTTAATGTTCCTTTGTGGTGGAAGTAATACCATATCAGCTGG
AATTCCAAATGCATGTCGTCATCATCTTGATTGGGCTTTTCATACTGGTA
AAACTACCAGTCCACAAGAATACACTGGTATGCAGAAAAAATGTGGAGTC
ACATTACAACAAGCTAATTACCAGGATTTCCAGCGATTGTTCAAATGTGA
AAACATCCATAAGCAGTATTGCAATGATCAAGGTTTGACATTCCCAACAA
CCTGCTCAGCACCACCATGCGACAAATGCACGGTTAATGTCAACACTGTT
CCACCAGCATGTAAACATCATATCGACTGGGCCTTCAACATTGGCAAAGT
ATCAAATCCACAGTGGTATCAAGATATGCCAGCAATCTGTGGAATATCAT
CAAATAAAGCCACTGTGGAAGATTTTCAACGTTACTTTAAATGTAAAAAT
CTTGTAGCAAATGATTGCCAGAAATTGCAATATCCACCAACATGCTCCAA
ACCACCTTGTAACGTTTGCCTTGACAGGAAATGTTGTGCCAAGGAATCTG
AAGATGTCTATAACCCATCCGTGTGTCCTGGTGAAGCTCGCCCAGTTGGC
TGCTGCATAGGCCTTCAAAGTACCTTTGTACCGGGACCTAATAATCATGT
CTGCAAGCGAAAACCAGACCCCAAACCATGCACTGGGAAAATTTGCATCT
CAGGGCGGAACATCATGGTGAATGGACAAATCTTTTATATGAAGGGCGTA
AACTGGAACCCAGTCCCTAAAGGACGAACGCATCCTCCACGCGACCAAGA
TTTCCTTCATTACGCAAAGATTGATGCTCCTAAAATGAAGGAAGCTGGTA
TCAATGTTATCAGAAGTTATCCGACCATTACTTCCTCTCAAGTTCTTGAC
ATCTTTCATAACAATGGCATTCTTGTTGTCAATCCGTTAAACCCATTAGA
CAGTACATCTAACATCCAACGAACTGTGAATTCCTTAAAAGGTCATATCA
CCATCTTGATGTGGGCACTAGGCAACGAATGGAATTACAATTCTTGCTAC
TCAAATATTGGTTTCCGTGGCTGCGCTCAAAAGATCCGAGAAGCAAGTAA
AGCAATCAAGGCGGTTGACAATGAACACCCCGTGACCAGTATCTATGGTG
AATTACCAGACAAGAATTTGGTGGATTCATTTCCCGATGTTGATGCATGG
GGATTGAACGTTTACTCTGGTAAATCATTCGGCAGCCGTTTCATGCGTTG
GTCAGGCATCTCCACCAAGCCAATGTATATGGCGGAATATGGGGCGGATT
CTTGGAACGCCCGCATCAATGCTGTTGATGAAGATTCTCAAGCGGTGGCA
ACGAAAGCTCTTCTCGGTGAAATTAAAGCACAAAGTACAAGACAGGGTGG
ACCATGTACTGGAGGAATCATCTTCGAATGGGCTGATGAGTGGTGGAAAT
CAGGTAGCCCCTGGACCCATGATAAAGGAGGGATCGCACCAGGTGGTGGA
CCGTATCCTGATAAAACGTTTAATGAAGAATATTGGGGTTTGATGACGAT
TGATCGTATACCAAGAAAAGCGTTTTatgaatacaaaaataattgaTAGA
CACAATTACATTACaagtttcatttcatttttgctTATCTTCTCTTTATG
ATATTGC
Run BLAST on NCBI

transcript from alignment at sc0000170:434819..438054-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013616 ID=TCONS_00013616|Name=TCONS_00013616|organism=Clytia hemisphaerica|type=transcript|length=3236bp|location=Sequence derived from alignment at sc0000170:434819..438054- (Clytia hemisphaerica)
TGGCGATTGAAAATCATCAAAGTAAGATATCACGTTGAAGTGAGGATTGA
TTTGTCTTGGACTACAAATGAACCATGCATTGAAATACCGATCATTATCG
GGACAGTTCCATTGGGAATTAAGTCAAAAGATATAAATCAAAACAATTGG
TTTTGACTGCTATTCGTCGAAACGAGGTTACAGTGTAAGAATTCAGCCAC
AAAATTGGCCTTTTCTCTATCAAATTGTTGGAAACATATTATAAAGTTGA
ATAATTTAAATTTAAAAAAAGCTGCTTTAGGCGTACAAGCTTTCGCGAGC
AGAAACTTTCGCGATTTTCGCGAATTTTGGCCCTTTACGCGAAAGTAAAT
GTCTTTAAAAATTCTAGGAAGGGCTATTCGCGAAAGTTTAGGCTCGCGAA
AAATTCTTGACAAAATAGAAAACCTGTAAACTTCAAACTTTGAATAAAAT
GTAACTTTTATGGCACTTTTTAGCCTGCTAAAAGACTAATAAGTCAAAGG
ACAAATGTTTCAAGCTAATCCAAGAAGTATTCGTCCCTCTAAGCCATTTT
TTCATGTGAAAATTCTCAATTTTACGTCTTGGTTCGCGAAAGTTTATGCT
CGCAAAAAATATTTTTCCGTTAAATTCGCGAAAGTAAAAGTCGTGAATTT
CGCGATTTTTCGTCTTCGCGAAAGTTTCTGCTCGCGAAAGTTTGTACGTC
TAAAGTATTACGAGCTCGTATGACCAATAGCCTGATTTAATTTTTGTTTT
AAAATTTACGCAATACTATATGAAAGACAAATTGTCATGGGTACGATTTT
GAAATTAGTGCACAATTAAAACAAAAACTACAAACTTTGAGATTAGTTCA
CTTCATCAGCAACTAGTTAAAAAGTTATTTTATCCAATGTGTCCATTTCT
GAGATTCATAAGTCTTTTTAAGGAAGCGTATGTAGGCTATTAATAAATAG
TGTTGTTTTTCAAAATCAAGGTTTTTAAGGTCAAACATTAATAAAACTTA
TTCAACCAAAATAAATATTGTCCATTTTTTGTTTATCAAACTAGAAAATG
TTTAGTTTTTGATAATTTTCATGTGTAGGCGACGCGAATTTTTTTTCCGT
TTACGGTTGGAAATATCATTTGACGGTTGGAAACATCAAACGAGCTTAAG
GCTGAGTAAATACACCTAAGTACTATCTAAACGATCTAAACTTTTATTTG
ATAAATAATATCGAATTCACGTTACAAATAAATTGTTATTCATTTTCTAG
ACGGGGGTCGAGAAACTATTTTATTTTACAAATGTGGATGATGATGGCGA
GATCATTTCTCGAGAAAAATAACCTTTTACCAAAACATTATCAAAATCTA
CTCTGATAATTTTTGATAATTATATAACACTTATATAATAATATATGTAT
TGATAATGAGGCACCCCCTACCCCTATTGAGTAAATCTTGGATTGCATAT
AAATACCACAAGTTTTGCACAAAATTATTTTGTTATTCTAATTTCAACAG
CTATCATCAAAAATCAATCAGGAATTTAAAGAAATATAAATTGTGATTCA
AGAAGAGGAAGCTGTACAAAATGAAGCTGCTTTGGATTTTAATGTTCCTT
TGTGGTGGAAGTAATACCATATCAGCTGGAATTCCAAATGCATGTCGTCA
TCATCTTGATTGGGCTTTTCATACTGGTAAAACTACCAGTCCACAAGAAT
ACACTGGTATGCAGAAAAAATGTGGAGTCACATTACAACAAGCTAATTAC
CAGGATTTCCAGCGATTGTTCAAATGTGAAAACATCCATAAGCAGTATTG
CAATGATCAAGGTTTGACATTCCCAACAACCTGCTCAGCACCACCATGCG
ACAAATGCACGGTTAATGTCAACACTGTTCCACCAGCATGTAAACATCAT
ATCGACTGGGCCTTCAACATTGGCAAAGTATCAAATCCACAGTGGTATCA
AGATATGCCAGCAATCTGTGGAATATCATCAAATAAAGCCACTGTGGAAG
ATTTTCAACGTTACTTTAAATGTAAAAATCTTGTAGCAAATGATTGCCAG
AAATTGCAATATCCACCAACATGCTCCAAACCACCTTGTAACGTTTGCCT
TGACAGGAAATGTTGTGCCAAGGAATCTGAAGATGTCTATAACCCATCCG
TGTGTCCTGGTGAAGCTCGCCCAGTTGGCTGCTGCATAGGCCTTCAAAGT
ACCTTTGTACCGGGACCTAATAATCATGTCTGCAAGCGAAAACCAGACCC
CAAACCATGCACTGGGAAAATTTGCATCTCAGGGCGGAACATCATGGTGA
ATGGACAAATCTTTTATATGAAGGGCGTAAACTGGAACCCAGTCCCTAAA
GGACGAACGCATCCTCCACGCGACCAAGATTTCCTTCATTACGCAAAGAT
TGATGCTCCTAAAATGAAGGAAGCTGGTATCAATGTTATCAGAAGTTATC
CGACCATTACTTCCTCTCAAGTTCTTGACATCTTTCATAACAATGGCATT
CTTGTTGTCAATCCGTTAAACCCATTAGACAGTACATCTAACATCCAACG
AACTGTGAATTCCTTAAAAGGTCATATCACCATCTTGATGTGGGCACTAG
GCAACGAATGGAATTACAATTCTTGCTACTCAAATATTGGTTTCCGTGGC
TGCGCTCAAAAGATCCGAGAAGCAAGTAAAGCAATCAAGGCGGTTGACAA
TGAACACCCCGTGACCAGTATCTATGGTGAATTACCAGACAAGAATTTGG
TGGATTCATTTCCCGATGTTGATGCATGGGGATTGAACGTTTACTCTGGT
AAATCATTCGGCAGCCGTTTCATGCGTTGGTCAGGCATCTCCACCAAGCC
AATGTATATGGCGGAATATGGGGCGGATTCTTGGAACGCCCGCATCAATG
CTGTTGATGAAGATTCTCAAGCGGTGGCAACGAAAGCTCTTCTCGGTGAA
ATTAAAGCACAAAGTACAAGACAGGGTGGACCATGTACTGGAGGAATCAT
CTTCGAATGGGCTGATGAGTGGTGGAAATCAGGTAGCCCCTGGACCCATG
ATAAAGGAGGGATCGCACCAGGTGGTGGACCGTATCCTGATAAAACGTTT
AATGAAGAATATTGGGGTTTGATGACGATTGATCGTATACCAAGAAAAGC
GTTTTATGAATACAAAAATAATTGATAGACACAATTACATTACAAGTTTC
ATTTCATTTTTGCTTATCTTCTCTTTATGATATTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007599XLOC_007599Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013616-exon-sc0000170-1575043694:438034..438054TCONS_00013616-exon-sc0000170-1575043694:438034..438054Clytia hemisphaericaexon
TCONS_00013616-exon-sc0000170-1575043694:434819..436554TCONS_00013616-exon-sc0000170-1575043694:434819..436554Clytia hemisphaericaexon
TCONS_00013616-exon-sc0000170-1510915933:438034..438054TCONS_00013616-exon-sc0000170-1510915933:438034..438054Clytia hemisphaericaexon
TCONS_00013616-exon-sc0000170-1510915933:434819..436554TCONS_00013616-exon-sc0000170-1510915933:434819..436554Clytia hemisphaericaexon
TCONS_00013616-exon-sc0000170-1491911889:438034..438054TCONS_00013616-exon-sc0000170-1491911889:438034..438054Clytia hemisphaericaexon
TCONS_00013616-exon-sc0000170-1491911889:434819..436554TCONS_00013616-exon-sc0000170-1491911889:434819..436554Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000170supercontigsc0000170:434819..438054 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.206266	0.268189	0.155697	0.126937	0.339975	0.293076	0.0883958	0.22068	0.309007	0.406677	0.208975	0.167899	10.0142	8.75361	20.1194	28.6859	4.64529	4.83181	40.9052	55.3728	22.6242	23.6378	20.7858	18.7778	22.0966	26.5505	0.408534	0.301845	2.8999	3.86163
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013616 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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