TCONS_00013627 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013627
Unique NameTCONS_00013627
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length271

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013627 ID=TCONS_00013627|Name=TCONS_00013627|organism=Clytia hemisphaerica|type=transcript|length=271bp
ATGAATGGAATCGCCGTTTGCTGATCAAATGGATGGTCTAGGTGATTGTT
TTGTCAAGTGTTTAGTTGCTGTTTGATAAATACATGTAGATGCTGTGGAA
GACAAATTATGTTATACTTATGTTGTGTTGATGTGGATGCTGTGCACGAC
AGATCCAATCACGATTGTTTTATATAGACTGTTCCTGTTGGTATTTGTTA
CTGTTAATATTCGTTCCAGTTGGTATTTGGCTTCCTGTTGTCATATCTTC
TGATTGGTCGTATGATCTTCG
Run BLAST on NCBI

transcript from alignment at sc0000170:21280..21550

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013627 ID=TCONS_00013627|Name=TCONS_00013627|organism=Clytia hemisphaerica|type=transcript|length=271bp|location=Sequence derived from alignment at sc0000170:21280..21550 (Clytia hemisphaerica)
CGAAGATCATACGACCAATCAGAAGATATGACAACAGGAAGCCAAATACC
AACTGGAACGAATATTAACAGTAACAAATACCAACAGGAACAGTCTATAT
AAAACAATCGTGATTGGATCTGTCGTGCACAGCATCCACATCAACACAAC
ATAAGTATAACATAATTTGTCTTCCACAGCATCTACATGTATTTATCAAA
CAGCAACTAAACACTTGACAAAACAATCACCTAGACCATCCATTTGATCA
GCAAACGGCGATTCCATTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007603XLOC_007603Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013627-exon-sc0000170-1491911889:21280..21550TCONS_00013627-exon-sc0000170-1491911889:21280..21550Clytia hemisphaericaexon
TCONS_00013627-exon-sc0000170-1510915933:21280..21550TCONS_00013627-exon-sc0000170-1510915933:21280..21550Clytia hemisphaericaexon
TCONS_00013627-exon-sc0000170-1575043694:21280..21550TCONS_00013627-exon-sc0000170-1575043694:21280..21550Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000170supercontigsc0000170:21280..21550 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.55876	0	0	0	1.50704	0.595441	0.718374	2.0176	0.941713	0.583232	2.2644	2.23279	0.743228	1.15777	0.634565	0.376395	1.67784	0	0.593974	0.621551	0.540241	0.790532	0	0	0	0.163904	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013627 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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