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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013657 ID=TCONS_00013657|Name=TCONS_00013657|organism=Clytia hemisphaerica|type=transcript|length=488bp
aaaaaaattcatgatgcTGTACGGAAACTTGGACACAAACACTTTGAAAA
CAGTGATCACTGAGGCACGTGCAGTACAGTTTCCAATggaatcaattcca
aacaataTCAAGGAGTGGTTGGAAGCAATGTCTTGGTCAAGAAATACCCG
GCCAGAATTTGTTCTTTTGTCTTGCCTCCCAGCCTTAAATTCAATTCTCG
GGCCAACAACCAAAGTAATTGTCAGGGAAGGTTCAAATAATTTGAATGTG
AAGCATCCAAGAAAGGCGTACACCGAGTCTTCGGGCTTGTTTGTCATCAT
TTTGTCTGAACCTGGTTCCGGCAAGAGCAATGCCTTCACACTGGCTGTTG
AAGACCCATTGCTTCAACAAGAAAATGATCTTCTCAAAAGTTTAACTGTT
CAGGACTACACCAAAAAGGGATTATTTGAGTCCCTCAAATCTCACAAAGG
CAGAGGATTACTTGCTTCCTCCgagcttcaaaattttt Run BLAST on NCBI protein sequence of TCONS_00013657-protein >TCONS_00013657-protein ID=TCONS_00013657-protein|Name=TCONS_00013657-protein|organism=Clytia hemisphaerica|type=polypeptide|length=162bp
KKFMMLYGNLDTNTLKTVITEARAVQFPMESIPNNIKEWLEAMSWSRNTR
PEFVLLSCLPALNSILGPTTKVIVREGSNNLNVKHPRKAYTESSGLFVII
LSEPGSGKSNAFTLAVEDPLLQQENDLLKSLTVQDYTKKGLFESLKSHKG
RGLLASSELQNF Run BLAST on NCBI transcript from alignment at sc0000171:15480..17846+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013657 ID=TCONS_00013657|Name=TCONS_00013657|organism=Clytia hemisphaerica|type=transcript|length=2367bp|location=Sequence derived from alignment at sc0000171:15480..17846+ (Clytia hemisphaerica)
aaaaaaattcatgatgcTGTACGGAAACTTGGACACAAACACTTTGAAAA
CAGTGATCACTGAGGCACGTGCAGTACAGTTTCCAATggaatcaattcca
aacaataTCAAGGAGTGGTTGGAAGCAATGTCTTGGTCAAGAAATACCCG
GCCAGAATTTGTTCTTTTGTCTTGCCTCCCAGCCTTAAATTCAATTCTCG
GGCCAACAACCAAAGTAATTGTCAGGGAAGGTTCAAATAATTTGAATGTG
AAGCATCCAAGAAAGGCGTACACCGAGTCTTCGGGCTTGTTTGTCATCAT
TTTGTCTGAACCTGGTTCCGGCAAGAGCAATGCCTTCACACTGGCTGTTG
AAGACCCATTGCTTCAACAAGAAAATGATCTTCTCAAAAGTTTAACTGTT
CAGGTATGTGTCATTCTTTGACTTGGTTCTTTCATTATATTTCAACTTAA
CTAAGTCTAAGATCATAGTCTGTATAAAAACCCTGGTTTGGAACAGATCA
TGTAAAAGGTCATGTTTCTGTGTTTCGATTGACCTGAAAGTCCACAAAAA
TACCTAAGATAAGATCACTATTATTGACTTTCTCCGTTATTGTAATGGAC
AATTCAAGGTTGTTTTTATCTAGCTActcacaatttaaaaaaagttagcT
TCTTATTGAAGttaaaaaaatagagaaaatgtTCTGCTAGCTGAAAAGTT
ATtgtgattttagaaaaaatataggCAGAATGACCAAGAGGCCTggaatc
ttcgagttagaaaactttGAGTTAGCAATTTTTGAGTTtgctaaattatg
acgtcataaaagtgcaaattatgacgtcactggACTCTAactctattttt
cattttcaaaaaaggattttcgagttagctaactcggaatttttttgtat
ggtggtagaaaaagccaaaaaaattcgaaaaagaagtaggcggaaggaag
tttgcttctTGTTTAATGTAGAGTGgatattttgtaaaagattagaaatt
agatttattgaatttaagtgccctgatgtatcttctgtgtgcaccaatga
ccaacaaaatttttctacataaaactacattttgctTAAATTTTGACTTG
CATGAGTGTATTACTTTTTACCACACTGGTTGTTCTTTCAGGTTCTttac
ttacacgttttttttttataaggaaccttaactttgctctgagcctggag
ttccttatttttacagagaatttcagcctcaaagttccttatcaagTNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgt
ttggataaccatctcttactgttccttaaaacttgttttcttattctcag
cctgagcagttccttaacaattccttattttttggaccattttcagcctc
gagttccttataaacgtgttccttatgataaaaaacgtgtatactttGGC
TCCAgaaaattgttttgtcagttctacagatattgcagattatttcaagg
tatatATGTAAGTTATATAATGCCGGCACATAAACAAACACTTACTTGAA
AAATTCGATTCTAAtgattgacgtcaatttttttatatgaagacgctgta
ttgaattttttaaataaacatagaattttgttttgatagttatttctaat
caactgattaatgcgtaagcaagaaacgtttcttaatctttatgtatGTA
AGTTATGTATATACAATACATTTGAGAGTTATGAATATTTCtaacattac
ttctttatgattctacaaattcaaaaaaatttcaaattcactttttctaa
aaaaatctaaGATAGCTAAATCGAAGGTTTTGTGTAAAAGaaattcgagt
tagctaactcaataaggttttttcgaaaaatgaaataCGAGTTAATTTta
actcaaaaaatattttttggaaataaaaaattgagttcgagtcgagtgac
gtcataatttgcacttttatgatgtcataatttagctaactcgaaaattc
cttACTCAAAGTTTTCTAACTCTAAGATTCCGGGCCTCAATGACCAACAG
TAATTTGAGTTTGACCAACATGATTTGATTTCAGTCCGACATGGTGTCTG
agtgactaaaaatatttatttgcagccctgtggAAGATAAATCGCATTCt
ctgaagcaaaaaaattaatagGTTCTTtagaaaggaaaagaaaatttaag
ggAGGAAGAAATAAGGTCAAAATATGGAATTCCAAATCTCATGAAAGTCC
CtcacattttattttttgtcaattgtTTCTAGGACTACACCAAAAAGGGA
TTATTTGAGTCCCTCAAATCTCACAAAGGCAGAGGATTACTTGCTTCCTC
Cgagcttcaaaattttt Coding sequence (CDS) from alignment at sc0000171:15480..17846+ >TCONS_00013657 ID=TCONS_00013657|Name=TCONS_00013657|organism=Clytia hemisphaerica|type=CDS|length=972bp|location=Sequence derived from alignment at sc0000171:15480..17846+ (Clytia hemisphaerica)
aaaaaattcatgatgcTGTACGGAAACTTGGACACAAACACTTTGAAAAC
AGTGATCACTGAGGCACGTGCAGTACAGTTTCCAATggaatcaattccaa
acaataTCAAGGAGTGGTTGGAAGCAATGTCTTGGTCAAGAAATACCCGG
CCAGAATTTGTTCTTTTGTCTTGCCTCCCAGCCTTAAATTCAATTCTCGG
GCCAACAACCAAAGTAATTGTCAGGGAAGGTTCAAATAATTTGAATGTGA
AGCATCCAAGAAAGGCGTACACCGAGTCTTCGGGCTTGTTTGTCATCATT
TTGTCTGAACCTGGTTCCGGCAAGAGCAATGCCTTCACACTGGCTGTTGA
AGACCCATTGCTTCAACAAGAAAATGATCTTCTCAAAAGTTTAACTGTTC
AGGACTACACCAAAAAGGGATTATTTGAGTCCCTCAAATCTCACAAAGGC
AGAGGATTACTTGCTTCCTCCgagcttcaaaattttaaaaaattcatgat
gcTGTACGGAAACTTGGACACAAACACTTTGAAAACAGTGATCACTGAGG
CACGTGCAGTACAGTTTCCAATggaatcaattccaaacaataTCAAGGAG
TGGTTGGAAGCAATGTCTTGGTCAAGAAATACCCGGCCAGAATTTGTTCT
TTTGTCTTGCCTCCCAGCCTTAAATTCAATTCTCGGGCCAACAACCAAAG
TAATTGTCAGGGAAGGTTCAAATAATTTGAATGTGAAGCATCCAAGAAAG
GCGTACACCGAGTCTTCGGGCTTGTTTGTCATCATTTTGTCTGAACCTGG
TTCCGGCAAGAGCAATGCCTTCACACTGGCTGTTGAAGACCCATTGCTTC
AACAAGAAAATGATCTTCTCAAAAGTTTAACTGTTCAGGACTACACCAAA
AAGGGATTATTTGAGTCCCTCAAATCTCACAAAGGCAGAGGATTACTTGC
TTCCTCCgagcttcaaaatttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013657-exon-sc0000171-1491911889:15480..15882 | TCONS_00013657-exon-sc0000171-1491911889:15480..15882 | Clytia hemisphaerica | exon |
| TCONS_00013657-exon-sc0000171-1510915933:15480..15882 | TCONS_00013657-exon-sc0000171-1510915933:15480..15882 | Clytia hemisphaerica | exon |
| TCONS_00013657-exon-sc0000171-1575043694:15480..15882 | TCONS_00013657-exon-sc0000171-1575043694:15480..15882 | Clytia hemisphaerica | exon |
| TCONS_00013657-exon-sc0000171-1491911889:17762..17846 | TCONS_00013657-exon-sc0000171-1491911889:17762..17846 | Clytia hemisphaerica | exon |
| TCONS_00013657-exon-sc0000171-1510915933:17762..17846 | TCONS_00013657-exon-sc0000171-1510915933:17762..17846 | Clytia hemisphaerica | exon |
| TCONS_00013657-exon-sc0000171-1575043694:17762..17846 | TCONS_00013657-exon-sc0000171-1575043694:17762..17846 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000171 | supercontig | sc0000171:15480..17846 + |
Blast
The following BLAST results are available for this feature:
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