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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013663 ID=TCONS_00013663|Name=TCONS_00013663|organism=Clytia hemisphaerica|type=transcript|length=2204bpRun BLAST on NCBI protein sequence of TCONS_00013663-protein >TCONS_00013663-protein ID=TCONS_00013663-protein|Name=TCONS_00013663-protein|organism=Clytia hemisphaerica|type=polypeptide|length=597bp EAPNNTDETKKVDEQWLLINKNEDEDLPVNQFDLTFKEKLNKHDCKVFIKRun BLAST on NCBI transcript from alignment at sc0000171:63337..69059+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013663 ID=TCONS_00013663|Name=TCONS_00013663|organism=Clytia hemisphaerica|type=transcript|length=5723bp|location=Sequence derived from alignment at sc0000171:63337..69059+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000171:63337..69059+ >TCONS_00013663 ID=TCONS_00013663|Name=TCONS_00013663|organism=Clytia hemisphaerica|type=CDS|length=16146bp|location=Sequence derived from alignment at sc0000171:63337..69059+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00013663 vs. Swiss-Prot (Human)
Match: GBF1 (Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 OS=Homo sapiens GN=GBF1 PE=1 SV=2) HSP 1 Score: 318.546 bits (815), Expect = 2.576e-92 Identity = 188/419 (44.87%), Postives = 240/419 (57.28%), Query Frame = 2
Query: 35 VDEQWLLINKNEDEDLP-----------VNQFDLTFKEKLNKHDCKVFIKASSSIGFIVRDMAHVRDFNIFQCIYAVLLFGEASSNGGLKYKHEEKTISQIEQEKRQNPPPKRPTKKNSRRLASPNSDRRRQGGSQADQPRSEDEIEFDENTSNIYDAISLQ----LLDLMYALHTKASKILGNMNWLDYSEKQTAEIKMRWSSKESLDQLPSTFRGDVDDEMSLLWVKCWCPLLQGIARLACDIRRDIRMNALTVLQRSLLAEDLHKLAASEWENCFNQVLFPMLASLLEIPGELDPTGIEETRMRAATLLCKAFLQHLNTLVSLATFTALWMTILDFMDRYMHADKSDLLFEAIPESLKNMLLVMSTAGIFEQPCADGEDGVPSSAAEQEKHRKYSALWQVTWERIDCFLPNLRNDL 1246
V+ WL++ K++ ++ +NQ+ LT L HD K +K S+ FIVRD AH+ N C+ + +F EAS NGG K +EK + + + N K+ + + R +S +GG D DE DE Y +SLQ LLDLM+ LHT+A+ I YS W+ ++ + T ++ + LW CWCPLLQGIA L CD RR +RM ALT LQR+LL DL KL A EWE+CFN+VLFP+L LLE D G+EETRMRA+TLL K FLQHL+ L+SL+TF ALW+TILDFMD+YMHA SDLL EAIPESLKNMLLVM TA IF AD G P SALW++TWERIDCFLP+LR++L
Sbjct: 1342 VNSGWLVVGKDDVDNSKPGPSRPGPSPLINQYSLTVGLDLGPHDTKSLLKCVESLSFIVRDAAHITPDNFELCVKTLRIFVEASLNGGCK--SQEKRGKSHKYDSKGNRFKKKSKEGSMLRRPRTSSQHASRGGQSDD-----DE---DEGVPASYHTVSLQVSQDLLDLMHTLHTRAASI--------YSS---------WAEEQ---RHLETGGQKIEADSRTLWAHCWCPLLQGIACLCCDARRQVRMQALTYLQRALLVHDLQKLDALEWESCFNKVLFPLLTKLLENISPADVGGMEETRMRASTLLSKVFLQHLSPLLSLSTFAALWLTILDFMDKYMHAGSSDLLSEAIPESLKNMLLVMDTAEIFHS--ADARGGGP------------SALWEITWERIDCFLPHLRDEL 1716 The following BLAST results are available for this feature:
BLAST of TCONS_00013663 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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