TCONS_00013685 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013685
Unique NameTCONS_00013685
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2230

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013685 ID=TCONS_00013685|Name=TCONS_00013685|organism=Clytia hemisphaerica|type=transcript|length=2230bp
CGTTCACACTCAAAATGGACAAGCCTACTACTGAAATCCTTTCCTTGAGT
TTGGTCAGAGAATATCTCAGCCGGAGAGGTTATCGCAAAACTCTTCACGC
TTTTGATAAAGAGACGCAGAAGAAAGAGCAAAGCATAACAAATAGACGAA
CTTTGGCTGACCAATTAAACATTTGGGATTTGATCAAACAAAATAAGAAA
AATGGTGATAAGTACCAAAGTTTTTATGAACTCATCGTCGACTTCATTCT
TCGTGAACGCAAAGATCTGAAAAAAAGTTCTAGAGATTCCACGCTCAAAG
ATGGTTCCAATACTTCATTACACGATGTCAAACATTCAACTCCTATTCGA
TGTAACAGGACGCGCCAatcccatcaaaatttaaaggagtgccaaaatga
caaaaatgaagaagatcGTTGGCTTTCAGACGTCCTAACGGGAAtccaaa
aagataaaaaagtaaTCGAGGCGAAAACTAAGAAAAACGATTCCAATAAT
AAAGAAAGCTTCAATTCCTTTGACTCTGTTGATACTAAGTCTTCTAAAAA
GAATGTAGTGAGTCACCAAAGCGCTGAAATCCTTGCCGAAGTACACCAAA
GTTTTGACAAACCTTCAACAAGTGAAACGGTTGACTCTGAGTTTTCCTTA
TCATTCATTGAAGGGATTCgcaaaaagaaagagaaaaaacaaacagttTC
ACTTTTTGATAGTCTAACCATCGATGATGTAGATTCTACCGAACACTTAT
CTCACGTTACAACACACATGACATTTGACCGTTCTGCAAAGTACCATGAT
GACGTCAAAAGCATTACACTTGAAACTGCTATTGAATTGAAaacattgat
ttttgggaatCCTAAATCAAGCTTCAACCCGGAATGGCGTAGACAGGGTT
TCTACTTTTCAACGCATCCTGATTTAGAGTATGGCCTTATGCAAGAGAAG
GGAGGGCCTTGCGGTCTCCTAGCTAGCGTTCAAGCCTGGATTCTTCGCTA
TCTTCTGTTCAACGAGAATGGCAAGCAAAATGGAAAAGTACCATTATCAC
TGACTCGTGAGGAGCAAGAAGAAGCGCTCATCAAAGCTCTCACACAAATA
CTATGGCGATCAAAGCAACCACATGACTCACAAACAGTCATCGCCATTCC
TTCAAAATCACCTAAGTTCAACGCCTCTCCTTCCACCTACAAAGCGGACA
ATTTAACCGAGCGATTAGACTTGTACGAGTGTAAAGAAAAAGTTAAACTa
gagatgtttttgaaaaagaatttgacGTTGTTCCAACAAAAAGATGGTAT
TGTATTGTTTTTATATTCAGTGGTTTTGACATATGGAATTAAGAATGTGA
AGAATAGTACGGATGacgagaaattgactttgattggtTGTCATGGTTAC
TGTACACAAGAAATGGTGAACTTGATGTTGGTCGGACGCGCGGTCTCTAA
CGTTTTTGATGGAGATAAGGAATTTGGCCAGacCCTACTCCATGGAATCC
AATCACAAAGCCCTATTGGTTTTCTATCCCTTTTCGAACATTACGGTTCG
TGTCAAGTTGGTGATCATTACAAAAACCCAATCTTCCCAATCTGGGTGGT
ATGCAGCGAAAGTCATTTTAGCGTTTTATTTACTactgatgacgtcacaa
aaaatTCCACGTtcgatttgttttattttgatggtTTGGGACAACAAGAC
GAAGAGATTCGACTCTCGATAACCCCAGATGGTTTAAAGAAGGTTTTGAA
CGatgatattgatttgattcccCCGTTGGATTCTTGCATCCGTACTAAAT
GGAAAAACGCACTCGTCAGTTGGAACGATACTGATCCGTTACTCTAAAAG
ATATACCTTGAAACCATGCATTGTTGACTAAACAGTTCAAGTAGTTTATT
ACAAATAAATATGTTGAAATCTTTAAAAACCGTACCGTTCTAAGATTGTT
GGTATCAAGTTTAaagcaagttcattttcaatACTTTGCTGATGATTGTT
CATGGAAGTCACGGAATATCAGAAACATAAAATTGGTTTCTCAATTAAAA
TACTACTTGTTAACGACTTTATAAACGTTAATTAAAGCTGTTTTGGGAGT
CTTTATTTAGCCTGGTTTAATTCGTTGAAAATCTATTAAATGAAACGGAT
TTTGATTGCTTACTCAGCAATGACCACCTCTGTGATTCAAGAATTTTAGT
GTATGGGCCAACTACGATCGACAAAGGTTC
Run BLAST on NCBI

protein sequence of TCONS_00013685-protein

>TCONS_00013685-protein ID=TCONS_00013685-protein|Name=TCONS_00013685-protein|organism=Clytia hemisphaerica|type=polypeptide|length=614bp
FTLKMDKPTTEILSLSLVREYLSRRGYRKTLHAFDKETQKKEQSITNRRT
LADQLNIWDLIKQNKKNGDKYQSFYELIVDFILRERKDLKKSSRDSTLKD
GSNTSLHDVKHSTPIRCNRTRQSHQNLKECQNDKNEEDRWLSDVLTGIQK
DKKVIEAKTKKNDSNNKESFNSFDSVDTKSSKKNVVSHQSAEILAEVHQS
FDKPSTSETVDSEFSLSFIEGIRKKKEKKQTVSLFDSLTIDDVDSTEHLS
HVTTHMTFDRSAKYHDDVKSITLETAIELKTLIFGNPKSSFNPEWRRQGF
YFSTHPDLEYGLMQEKGGPCGLLASVQAWILRYLLFNENGKQNGKVPLSL
TREEQEEALIKALTQILWRSKQPHDSQTVIAIPSKSPKFNASPSTYKADN
LTERLDLYECKEKVKLEMFLKKNLTLFQQKDGIVLFLYSVVLTYGIKNVK
NSTDDEKLTLIGCHGYCTQEMVNLMLVGRAVSNVFDGDKEFGQTLLHGIQ
SQSPIGFLSLFEHYGSCQVGDHYKNPIFPIWVVCSESHFSVLFTTDDVTK
NSTFDLFYFDGLGQQDEEIRLSITPDGLKKVLNDDIDLIPPLDSCIRTKW
KNALVSWNDTDPLL
Run BLAST on NCBI

transcript from alignment at sc0000171:397361..402258+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013685 ID=TCONS_00013685|Name=TCONS_00013685|organism=Clytia hemisphaerica|type=transcript|length=4898bp|location=Sequence derived from alignment at sc0000171:397361..402258+ (Clytia hemisphaerica)
CGTTCACACTCAAAATGGACAAGCCTACTACTGAAATCCTTTCCTTGAGT
TTGGTCAGAGAATATCTCAGCCGGAGAGGTTATCGCAAAACTCTTCACGC
TTTTGATAAAGAGACGCAGAAGAAAGAGCAAAGGTActggatttatattt
ttttttagtatttctgggattttttatctcaggatttaaatttgaattta
taaTTACTTTTGTGCGTAATCTTCTGATTAATTTTGTTTATCtatttaaa
aatgtttgttCTTACATTCGTTCTTCTCTTCTTCCCtgatacatttttta
taagaacaacgaggctcaatattcctaaaaaataagaacaatttaagaac
aaagtTGAGCATGGAATTATTCAATTTCAAGCAACTGgaatcaaatatta
aaaatcgaGTATAAAGtttaaaatacctcaatatCACCGCTAagtaagaa
caggataagaacaatttgaggctcaaaatgtcaaaatataagaacaatcg
AGCCTCATAACAAATCTacaggttcttataaaaaatgagtGTAGCTTTTC
TCCcgtttcactttttatttcaCCTCATtcatttggttgttttttttaaa
gcatcaattattttttactacTACAGCATAACAAATAGACGAACTTTGGC
TGACCAATTAAACATTTGGGATTTGATCAAACAAAATAAGGTATTATTAT
ATCGCTTGTATAGTAAAGAGCTTTTCAGGATTCTTAAATTCTTAAATTCA
ATTTCGTCAGGAGTCGTTTATACTCATTTTTGACTGGACACCACTAGTAG
GGACCTGGGAGCGCCGCAACCCATGCGTCATGCTTTTAAAGCAGCCATAG
AGGGCATAGAGGCGGTTCAATCGGGCATAGATTCCAGTCGTGATTGACAA
TTTTTCGGAATAGCCATTCTTATGAAGAATAAGTAGAAAAGTGCCCTTTT
CTGTCTCTAGTGTACGCTGCCCTGTCTTCCTAGAATTTTGCCTGTTCGGT
CTTTTTTTGTTCAGACACATCTGTTTTAAGTTATCAAATACCCAACTAAA
ATATATGATTACGACTTTTGATTTCAGAAAAATGGTGATAAGTACCAAAG
TTTTTATGAACTCATCGTCGACTTCATTCTTCGTGAACGCAAAGATCTGA
AAAAAAGGTATTTCCAATTATTACTCATTCCTCCTATCGTACCGTACTTA
CGGCTAACTATGTCTAACAGATCGCTCAAACgcgccaaaatcgcaaaaat
ccGGATAGAATTGGGGTACAGTCACtttacaaaaagacaaaaccaAGAAG
GCGCATATTCCGCAAAAAAGAGGCTAGCTTGGTCCGTCCCTCGAATTACG
CCAAAGTTTTCACTTTCAGaggaaatgtttttatttgattgaTGAGTGAA
CTTTGAGATCTTTAATAATTAATCTTAAATACGGTATGCGGAGACAATGa
cgaggttaagcaagtgtttataTAGACCGTTCatgcgataccgtaggcct
gtacataagatttcacttgcatggtttgctttggTAAGTTATGTACAGGa
ctacggtatcgcactttacggtcaaaataaacccgtgcttaacctcgcta
atgcagggccggcgaatcaattttgaaagtggaggggccaaatagtaagt
gtctaaggaggcgccaccatggttggttggcttagcaaaaaagtgggggg
gggcatggccccCTGGCCCCTCCAGTTTCGCCGGCCCTGTAATGTTTCTG
TGCCTCCTCTGAATTGCAATTCCCGATAATTGACTTTTAGCAGCCAAAAA
GTTTGCTAAGACTATGTCTAGATGTTACGGTTCGAAACGAAACGGTCCCG
AACACTGTGCGGAcaccaaaaatttgaaacgtcAAAACATGGTGTAAGTT
TCCAATCTGTTGAGAGTGTTGAAATGGTCTCTTAGAGTGGTTGAAATCCA
GTGAAAACCTGGAGTATATTACCAGAATGAAATTACATTGATATCATTAT
ATCTTTTATCATtactttaatttaattttcgaaCCAACTaaattttttcc
tcattttcagTTCTAGAGATTCCACGCTCAAAGATGGTTCCAATACTTCA
TTACACGATGTCAAACATTCAACTCCTATTCGATGTAACAGGACGCGCCA
atcccatcaaaatttaaaggagtgccaaaatgacaaaaatgaagaagatc
GTTGGCTTTCAGACGTCCTAACGGGAAtccaaaaagataaaaaagtaaTC
GAGGCGAAAACTAAGAAAAACGATTCCAATAATAAAGAAAGCTTCAATTC
CTTTGACTCTGTTGATACTAAGTCTTCTAAAAAGAATGTAGTGAGTCACC
AAAGCGCTGAAATCCTTGCCGAAGTACACCAAAGTTTTGACAAACCTTCA
ACAAGTGAAACGGTTGACTCTGAGTTTTCCTTATCATTCATTGAAGGGAT
TCgcaaaaagaaagagaaaaaacaaacagttTCACTTTTTGATAGTCTAA
CCATCGATGATGTAGATTCTACCGAACACTTATCTCACGTTACAACACAC
ATGACATTTGACCGTTCTGCAAAGTACCATGATGACGTCAAAAGCATTAC
ACTTGAAACTGCTATTGAATTGAAaacattgatttttgggaatCCTAAAT
CAAGCTTCAACCCGGAATGGCGTAGACAGGGTTTCTACTTTTCAACGCAT
CCTGATTTAGAGTATGGCCTTATGCAAGAGAAGGGAGGGCCTTGCGGTCT
CCTAGCTAGCGTTCAAGCCTGGATTCTTCGCTATCTTCTGTTCAACGAGA
ATGGCAAGCAAAATGGAAAAGGTAAATATGTCTCAGTTTTATTTTCGTAG
AATGTCGTTTTTAATTTCGAGAACTTGAAAAAAGNCAGTTTTATTTTCGT
AGGATGTCGTTATTAATTTCAAGAACTTGAAAAAAGGTTTACTGAACTTA
AAAcctattttttttctgttttaaactctaaatgagtaataagtagTCCC
ATGGTCAAATGCGAAGGAATGATCCGAGCCTGTCTGAAATAACACTCTAC
ACCTTGATTTGAACCAAAGGAGAAATTCATTTCACGACAATTTTTCTTAG
TACCATTATCACTGACTCGTGAGGAGCAAGAAGAAGCGCTCATCAAAGCT
CTCACACAAATACTATGGCGATCAAAGCAACCACATGACTCACAAACAGT
CATCGCCATTCCTTCAAAATCACCTAAGTTCAACGCCTCTCCTTCCACCT
ACAAAGCGGACAATTTAACCGAGCGATTAGACTTGTACGAGTGTAAAGAA
AAAGTTAAACTagagatgtttttgaaaaagaatttgacGTTGTTCCAACA
AAAAGATGGTATTGTATTGTTTTTATATTCAGTGGTTTTGACATATGGAA
TTAAGAATGTGAAGAATAGTACGGATGacgagaaattgactttgattggt
TGTCATGGTTACTGTACACAAGAAATGGTGAACTTGATGTTGGTCGGACG
CGCGGTCTCTAACGTTTTTGATGGAGATAAGGAATTTGGCCAGGTAAGGT
TCACTGTTTTATTCGCATCTTATCTGCTTTCACAATGAAATAAAATCTGA
CCGTGCACATAGTAAACTTATAACAAACAGATCATCCAAAACACTTTGCT
Ctgcacagatttataaagcccgtagggctagatgtcgtgcttttgctgaa
aagtggtGTGCCGTGGGTAGGTAGAAAATCCTACCTTGGTCacatgacat
tacaatagaatttcagccgttgaccaatcagaagcttcgaggattttcgg
aaacaatagaaactatatttcttgggctattcacttttttttgcctgcaa
gGAGTACAGAGTAACCTGAGATTATCTCATGGGCACGGATTACTTCAACT
AACTTGCGAAATTATACCATTTAGTAATCTTGGAATTGAAGTCGATTCTA
ACCTATAAACAAGTGTCGTTTCGTTTGGGAAAGAACTTTAGCCGCAACCT
TTGAACCTTTCTTTAATTCAAgggtaatttttttgtttggttcCTTGAGA
ATGGAATGAAACCTAAATATTATAGATTTTCTTCTCGGTCTAGTTGTTGT
GATCAGGAACTGAAGATAAACattattgttgtttttgttgtttttttaga
cCCTACTCCATGGAATCCAATCACAAAGCCCTATTGGTTTTCTATCCCTT
TTCGAACATTACGGTTCGTGTCAAGTTGGTGATCATTACAAAAACCCAAT
CTTCCCAATCTGGGTGGTATGCAGCGAAAGTCATTTTAGCGTTTTATTTA
CTactgatgacgtcacaaaaaatTCCACGTtcgatttgttttattttgat
ggtTTGGGACAACAAGACGAAGAGATTCGACTCTCGATAACCCCAGATGG
TTTAAAGAAGGTTTTGAACGatgatattgatttgattcccCCGTTGGATT
CTTGCATCCGTACTAAATGGAAAAACGCACTCGTCAGTTGGAACGATACT
GATCCGTTACTCTAAAAGATATACCTTGAAACCATGCATTGTTGACTAAA
CAGTTCAAGTAGTTTATTACAAATAAATATGTTGAAATCTTTAAAAACCG
TACCGTTCTAAGATTGTTGGTATCAAGTTTAaagcaagttcattttcaat
ACTTTGCTGATGATTGTTCATGGAAGTCACGGAATATCAGAAACATAAAA
TTGGTTTCTCAATTAAAATACTACTTGTTAACGACTTTATAAACGTTAAT
TAAAGCTGTTTTGGGAGTCTTTATTTAGCCTGGTTTAATTCGTTGAAAAT
CTATTAAATGAAACGGATTTTGATTGCTTACTCAGCAATGACCACCTCTG
TGATTCAAGAATTTTAGTGTATGGGCCAACTACGATCGACAAAGGTTC

Coding sequence (CDS) from alignment at sc0000171:397361..402258+

>TCONS_00013685 ID=TCONS_00013685|Name=TCONS_00013685|organism=Clytia hemisphaerica|type=CDS|length=11070bp|location=Sequence derived from alignment at sc0000171:397361..402258+ (Clytia hemisphaerica)
TTCACACTCAAAATGGACAAGCCTACTACTGAAATCCTTTCCTTGAGTTT
GGTCAGAGAATATCTCAGCCGGAGAGGTTATCGCAAAACTCTTCACGCTT
TTGATAAAGAGACGCAGAAGAAAGAGCAAAGCATAACAAATAGACGAACT
TTGGCTGACCAATTAAACATTTGGGATTTGATCAAACAAAATAAGAAAAA
TGGTGATAAGTACCAAAGTTTTTATGAACTCATCGTCGACTTCATTCTTC
GTGAACGCAAAGATCTGAAAAAAAGTTCTAGAGATTCCACGCTCAAAGAT
GGTTCCAATACTTCATTACACGATGTCAAACATTCAACTCCTATTCGATG
TAACAGGACGCGCCAatcccatcaaaatttaaaggagtgccaaaatgaca
aaaatgaagaagatcGTTGGCTTTCAGACGTCCTAACGGGAAtccaaaaa
gataaaaaagtaaTCGAGGCGAAAACTAAGAAAAACGATTCCAATAATAA
AGAAAGCTTCAATTCCTTTGACTCTGTTGATACTAAGTCTTCTAAAAAGA
ATGTAGTGAGTCACCAAAGCGCTGAAATCCTTGCCGAAGTACACCAAAGT
TTTGACAAACCTTCAACAAGTGAAACGGTTGACTCTGAGTTTTCCTTATC
ATTCATTGAAGGGATTCgcaaaaagaaagagaaaaaacaaacagttTCAC
TTTTTGATAGTCTAACCATCGATGATGTAGATTCTACCGAACACTTATCT
CACGTTACAACACACATGACATTTGACCGTTCTGCAAAGTACCATGATGA
CGTCAAAAGCATTACACTTGAAACTGCTATTGAATTGAAaacattgattt
ttgggaatCCTAAATCAAGCTTCAACCCGGAATGGCGTAGACAGGGTTTC
TACTTTTCAACGCATCCTGATTTAGAGTATGGCCTTATGCAAGAGAAGGG
AGGGCCTTGCGGTCTCCTAGCTAGCGTTCAAGCCTGGATTCTTCGCTATC
TTCTGTTCAACGAGAATGGCAAGCAAAATGGAAAAGTACCATTATCACTG
ACTCGTGAGGAGCAAGAAGAAGCGCTCATCAAAGCTCTCACACAAATACT
ATGGCGATCAAAGCAACCACATGACTCACAAACAGTCATCGCCATTCCTT
CAAAATCACCTAAGTTCAACGCCTCTCCTTCCACCTACAAAGCGGACAAT
TTAACCGAGCGATTAGACTTGTACGAGTGTAAAGAAAAAGTTAAACTaga
gatgtttttgaaaaagaatttgacGTTGTTCCAACAAAAAGATGGTATTG
TATTGTTTTTATATTCAGTGGTTTTGACATATGGAATTAAGAATGTGAAG
AATAGTACGGATGacgagaaattgactttgattggtTGTCATGGTTACTG
TACACAAGAAATGGTGAACTTGATGTTGGTCGGACGCGCGGTCTCTAACG
TTTTTGATGGAGATAAGGAATTTGGCCAGacCCTACTCCATGGAATCCAA
TCACAAAGCCCTATTGGTTTTCTATCCCTTTTCGAACATTACGGTTCGTG
TCAAGTTGGTGATCATTACAAAAACCCAATCTTCCCAATCTGGGTGGTAT
GCAGCGAAAGTCATTTTAGCGTTTTATTTACTactgatgacgtcacaaaa
aatTCCACGTtcgatttgttttattttgatggtTTGGGACAACAAGACGA
AGAGATTCGACTCTCGATAACCCCAGATGGTTTAAAGAAGGTTTTGAACG
atgatattgatttgattcccCCGTTGGATTCTTGCATCCGTACTAAATGG
AAAAACGCACTCGTCAGTTGGAACGATACTGATCCGTTACTCTAATTCAC
ACTCAAAATGGACAAGCCTACTACTGAAATCCTTTCCTTGAGTTTGGTCA
GAGAATATCTCAGCCGGAGAGGTTATCGCAAAACTCTTCACGCTTTTGAT
AAAGAGACGCAGAAGAAAGAGCAAAGCATAACAAATAGACGAACTTTGGC
TGACCAATTAAACATTTGGGATTTGATCAAACAAAATAAGAAAAATGGTG
ATAAGTACCAAAGTTTTTATGAACTCATCGTCGACTTCATTCTTCGTGAA
CGCAAAGATCTGAAAAAAAGTTCTAGAGATTCCACGCTCAAAGATGGTTC
CAATACTTCATTACACGATGTCAAACATTCAACTCCTATTCGATGTAACA
GGACGCGCCAatcccatcaaaatttaaaggagtgccaaaatgacaaaaat
gaagaagatcGTTGGCTTTCAGACGTCCTAACGGGAAtccaaaaagataa
aaaagtaaTCGAGGCGAAAACTAAGAAAAACGATTCCAATAATAAAGAAA
GCTTCAATTCCTTTGACTCTGTTGATACTAAGTCTTCTAAAAAGAATGTA
GTGAGTCACCAAAGCGCTGAAATCCTTGCCGAAGTACACCAAAGTTTTGA
CAAACCTTCAACAAGTGAAACGGTTGACTCTGAGTTTTCCTTATCATTCA
TTGAAGGGATTCgcaaaaagaaagagaaaaaacaaacagttTCACTTTTT
GATAGTCTAACCATCGATGATGTAGATTCTACCGAACACTTATCTCACGT
TACAACACACATGACATTTGACCGTTCTGCAAAGTACCATGATGACGTCA
AAAGCATTACACTTGAAACTGCTATTGAATTGAAaacattgatttttggg
aatCCTAAATCAAGCTTCAACCCGGAATGGCGTAGACAGGGTTTCTACTT
TTCAACGCATCCTGATTTAGAGTATGGCCTTATGCAAGAGAAGGGAGGGC
CTTGCGGTCTCCTAGCTAGCGTTCAAGCCTGGATTCTTCGCTATCTTCTG
TTCAACGAGAATGGCAAGCAAAATGGAAAAGTACCATTATCACTGACTCG
TGAGGAGCAAGAAGAAGCGCTCATCAAAGCTCTCACACAAATACTATGGC
GATCAAAGCAACCACATGACTCACAAACAGTCATCGCCATTCCTTCAAAA
TCACCTAAGTTCAACGCCTCTCCTTCCACCTACAAAGCGGACAATTTAAC
CGAGCGATTAGACTTGTACGAGTGTAAAGAAAAAGTTAAACTagagatgt
ttttgaaaaagaatttgacGTTGTTCCAACAAAAAGATGGTATTGTATTG
TTTTTATATTCAGTGGTTTTGACATATGGAATTAAGAATGTGAAGAATAG
TACGGATGacgagaaattgactttgattggtTGTCATGGTTACTGTACAC
AAGAAATGGTGAACTTGATGTTGGTCGGACGCGCGGTCTCTAACGTTTTT
GATGGAGATAAGGAATTTGGCCAGacCCTACTCCATGGAATCCAATCACA
AAGCCCTATTGGTTTTCTATCCCTTTTCGAACATTACGGTTCGTGTCAAG
TTGGTGATCATTACAAAAACCCAATCTTCCCAATCTGGGTGGTATGCAGC
GAAAGTCATTTTAGCGTTTTATTTACTactgatgacgtcacaaaaaatTC
CACGTtcgatttgttttattttgatggtTTGGGACAACAAGACGAAGAGA
TTCGACTCTCGATAACCCCAGATGGTTTAAAGAAGGTTTTGAACGatgat
attgatttgattcccCCGTTGGATTCTTGCATCCGTACTAAATGGAAAAA
CGCACTCGTCAGTTGGAACGATACTGATCCGTTACTCTAATTCACACTCA
AAATGGACAAGCCTACTACTGAAATCCTTTCCTTGAGTTTGGTCAGAGAA
TATCTCAGCCGGAGAGGTTATCGCAAAACTCTTCACGCTTTTGATAAAGA
GACGCAGAAGAAAGAGCAAAGCATAACAAATAGACGAACTTTGGCTGACC
AATTAAACATTTGGGATTTGATCAAACAAAATAAGAAAAATGGTGATAAG
TACCAAAGTTTTTATGAACTCATCGTCGACTTCATTCTTCGTGAACGCAA
AGATCTGAAAAAAAGTTCTAGAGATTCCACGCTCAAAGATGGTTCCAATA
CTTCATTACACGATGTCAAACATTCAACTCCTATTCGATGTAACAGGACG
CGCCAatcccatcaaaatttaaaggagtgccaaaatgacaaaaatgaaga
agatcGTTGGCTTTCAGACGTCCTAACGGGAAtccaaaaagataaaaaag
taaTCGAGGCGAAAACTAAGAAAAACGATTCCAATAATAAAGAAAGCTTC
AATTCCTTTGACTCTGTTGATACTAAGTCTTCTAAAAAGAATGTAGTGAG
TCACCAAAGCGCTGAAATCCTTGCCGAAGTACACCAAAGTTTTGACAAAC
CTTCAACAAGTGAAACGGTTGACTCTGAGTTTTCCTTATCATTCATTGAA
GGGATTCgcaaaaagaaagagaaaaaacaaacagttTCACTTTTTGATAG
TCTAACCATCGATGATGTAGATTCTACCGAACACTTATCTCACGTTACAA
CACACATGACATTTGACCGTTCTGCAAAGTACCATGATGACGTCAAAAGC
ATTACACTTGAAACTGCTATTGAATTGAAaacattgatttttgggaatCC
TAAATCAAGCTTCAACCCGGAATGGCGTAGACAGGGTTTCTACTTTTCAA
CGCATCCTGATTTAGAGTATGGCCTTATGCAAGAGAAGGGAGGGCCTTGC
GGTCTCCTAGCTAGCGTTCAAGCCTGGATTCTTCGCTATCTTCTGTTCAA
CGAGAATGGCAAGCAAAATGGAAAAGTACCATTATCACTGACTCGTGAGG
AGCAAGAAGAAGCGCTCATCAAAGCTCTCACACAAATACTATGGCGATCA
AAGCAACCACATGACTCACAAACAGTCATCGCCATTCCTTCAAAATCACC
TAAGTTCAACGCCTCTCCTTCCACCTACAAAGCGGACAATTTAACCGAGC
GATTAGACTTGTACGAGTGTAAAGAAAAAGTTAAACTagagatgtttttg
aaaaagaatttgacGTTGTTCCAACAAAAAGATGGTATTGTATTGTTTTT
ATATTCAGTGGTTTTGACATATGGAATTAAGAATGTGAAGAATAGTACGG
ATGacgagaaattgactttgattggtTGTCATGGTTACTGTACACAAGAA
ATGGTGAACTTGATGTTGGTCGGACGCGCGGTCTCTAACGTTTTTGATGG
AGATAAGGAATTTGGCCAGacCCTACTCCATGGAATCCAATCACAAAGCC
CTATTGGTTTTCTATCCCTTTTCGAACATTACGGTTCGTGTCAAGTTGGT
GATCATTACAAAAACCCAATCTTCCCAATCTGGGTGGTATGCAGCGAAAG
TCATTTTAGCGTTTTATTTACTactgatgacgtcacaaaaaatTCCACGT
tcgatttgttttattttgatggtTTGGGACAACAAGACGAAGAGATTCGA
CTCTCGATAACCCCAGATGGTTTAAAGAAGGTTTTGAACGatgatattga
tttgattcccCCGTTGGATTCTTGCATCCGTACTAAATGGAAAAACGCAC
TCGTCAGTTGGAACGATACTGATCCGTTACTCTAATTCACACTCAAAATG
GACAAGCCTACTACTGAAATCCTTTCCTTGAGTTTGGTCAGAGAATATCT
CAGCCGGAGAGGTTATCGCAAAACTCTTCACGCTTTTGATAAAGAGACGC
AGAAGAAAGAGCAAAGCATAACAAATAGACGAACTTTGGCTGACCAATTA
AACATTTGGGATTTGATCAAACAAAATAAGAAAAATGGTGATAAGTACCA
AAGTTTTTATGAACTCATCGTCGACTTCATTCTTCGTGAACGCAAAGATC
TGAAAAAAAGTTCTAGAGATTCCACGCTCAAAGATGGTTCCAATACTTCA
TTACACGATGTCAAACATTCAACTCCTATTCGATGTAACAGGACGCGCCA
atcccatcaaaatttaaaggagtgccaaaatgacaaaaatgaagaagatc
GTTGGCTTTCAGACGTCCTAACGGGAAtccaaaaagataaaaaagtaaTC
GAGGCGAAAACTAAGAAAAACGATTCCAATAATAAAGAAAGCTTCAATTC
CTTTGACTCTGTTGATACTAAGTCTTCTAAAAAGAATGTAGTGAGTCACC
AAAGCGCTGAAATCCTTGCCGAAGTACACCAAAGTTTTGACAAACCTTCA
ACAAGTGAAACGGTTGACTCTGAGTTTTCCTTATCATTCATTGAAGGGAT
TCgcaaaaagaaagagaaaaaacaaacagttTCACTTTTTGATAGTCTAA
CCATCGATGATGTAGATTCTACCGAACACTTATCTCACGTTACAACACAC
ATGACATTTGACCGTTCTGCAAAGTACCATGATGACGTCAAAAGCATTAC
ACTTGAAACTGCTATTGAATTGAAaacattgatttttgggaatCCTAAAT
CAAGCTTCAACCCGGAATGGCGTAGACAGGGTTTCTACTTTTCAACGCAT
CCTGATTTAGAGTATGGCCTTATGCAAGAGAAGGGAGGGCCTTGCGGTCT
CCTAGCTAGCGTTCAAGCCTGGATTCTTCGCTATCTTCTGTTCAACGAGA
ATGGCAAGCAAAATGGAAAAGTACCATTATCACTGACTCGTGAGGAGCAA
GAAGAAGCGCTCATCAAAGCTCTCACACAAATACTATGGCGATCAAAGCA
ACCACATGACTCACAAACAGTCATCGCCATTCCTTCAAAATCACCTAAGT
TCAACGCCTCTCCTTCCACCTACAAAGCGGACAATTTAACCGAGCGATTA
GACTTGTACGAGTGTAAAGAAAAAGTTAAACTagagatgtttttgaaaaa
gaatttgacGTTGTTCCAACAAAAAGATGGTATTGTATTGTTTTTATATT
CAGTGGTTTTGACATATGGAATTAAGAATGTGAAGAATAGTACGGATGac
gagaaattgactttgattggtTGTCATGGTTACTGTACACAAGAAATGGT
GAACTTGATGTTGGTCGGACGCGCGGTCTCTAACGTTTTTGATGGAGATA
AGGAATTTGGCCAGacCCTACTCCATGGAATCCAATCACAAAGCCCTATT
GGTTTTCTATCCCTTTTCGAACATTACGGTTCGTGTCAAGTTGGTGATCA
TTACAAAAACCCAATCTTCCCAATCTGGGTGGTATGCAGCGAAAGTCATT
TTAGCGTTTTATTTACTactgatgacgtcacaaaaaatTCCACGTtcgat
ttgttttattttgatggtTTGGGACAACAAGACGAAGAGATTCGACTCTC
GATAACCCCAGATGGTTTAAAGAAGGTTTTGAACGatgatattgatttga
ttcccCCGTTGGATTCTTGCATCCGTACTAAATGGAAAAACGCACTCGTC
AGTTGGAACGATACTGATCCGTTACTCTAATTCACACTCAAAATGGACAA
GCCTACTACTGAAATCCTTTCCTTGAGTTTGGTCAGAGAATATCTCAGCC
GGAGAGGTTATCGCAAAACTCTTCACGCTTTTGATAAAGAGACGCAGAAG
AAAGAGCAAAGCATAACAAATAGACGAACTTTGGCTGACCAATTAAACAT
TTGGGATTTGATCAAACAAAATAAGAAAAATGGTGATAAGTACCAAAGTT
TTTATGAACTCATCGTCGACTTCATTCTTCGTGAACGCAAAGATCTGAAA
AAAAGTTCTAGAGATTCCACGCTCAAAGATGGTTCCAATACTTCATTACA
CGATGTCAAACATTCAACTCCTATTCGATGTAACAGGACGCGCCAatccc
atcaaaatttaaaggagtgccaaaatgacaaaaatgaagaagatcGTTGG
CTTTCAGACGTCCTAACGGGAAtccaaaaagataaaaaagtaaTCGAGGC
GAAAACTAAGAAAAACGATTCCAATAATAAAGAAAGCTTCAATTCCTTTG
ACTCTGTTGATACTAAGTCTTCTAAAAAGAATGTAGTGAGTCACCAAAGC
GCTGAAATCCTTGCCGAAGTACACCAAAGTTTTGACAAACCTTCAACAAG
TGAAACGGTTGACTCTGAGTTTTCCTTATCATTCATTGAAGGGATTCgca
aaaagaaagagaaaaaacaaacagttTCACTTTTTGATAGTCTAACCATC
GATGATGTAGATTCTACCGAACACTTATCTCACGTTACAACACACATGAC
ATTTGACCGTTCTGCAAAGTACCATGATGACGTCAAAAGCATTACACTTG
AAACTGCTATTGAATTGAAaacattgatttttgggaatCCTAAATCAAGC
TTCAACCCGGAATGGCGTAGACAGGGTTTCTACTTTTCAACGCATCCTGA
TTTAGAGTATGGCCTTATGCAAGAGAAGGGAGGGCCTTGCGGTCTCCTAG
CTAGCGTTCAAGCCTGGATTCTTCGCTATCTTCTGTTCAACGAGAATGGC
AAGCAAAATGGAAAAGTACCATTATCACTGACTCGTGAGGAGCAAGAAGA
AGCGCTCATCAAAGCTCTCACACAAATACTATGGCGATCAAAGCAACCAC
ATGACTCACAAACAGTCATCGCCATTCCTTCAAAATCACCTAAGTTCAAC
GCCTCTCCTTCCACCTACAAAGCGGACAATTTAACCGAGCGATTAGACTT
GTACGAGTGTAAAGAAAAAGTTAAACTagagatgtttttgaaaaagaatt
tgacGTTGTTCCAACAAAAAGATGGTATTGTATTGTTTTTATATTCAGTG
GTTTTGACATATGGAATTAAGAATGTGAAGAATAGTACGGATGacgagaa
attgactttgattggtTGTCATGGTTACTGTACACAAGAAATGGTGAACT
TGATGTTGGTCGGACGCGCGGTCTCTAACGTTTTTGATGGAGATAAGGAA
TTTGGCCAGacCCTACTCCATGGAATCCAATCACAAAGCCCTATTGGTTT
TCTATCCCTTTTCGAACATTACGGTTCGTGTCAAGTTGGTGATCATTACA
AAAACCCAATCTTCCCAATCTGGGTGGTATGCAGCGAAAGTCATTTTAGC
GTTTTATTTACTactgatgacgtcacaaaaaatTCCACGTtcgatttgtt
ttattttgatggtTTGGGACAACAAGACGAAGAGATTCGACTCTCGATAA
CCCCAGATGGTTTAAAGAAGGTTTTGAACGatgatattgatttgattccc
CCGTTGGATTCTTGCATCCGTACTAAATGGAAAAACGCACTCGTCAGTTG
GAACGATACTGATCCGTTACTCTAATTCACACTCAAAATGGACAAGCCTA
CTACTGAAATCCTTTCCTTGAGTTTGGTCAGAGAATATCTCAGCCGGAGA
GGTTATCGCAAAACTCTTCACGCTTTTGATAAAGAGACGCAGAAGAAAGA
GCAAAGCATAACAAATAGACGAACTTTGGCTGACCAATTAAACATTTGGG
ATTTGATCAAACAAAATAAGAAAAATGGTGATAAGTACCAAAGTTTTTAT
GAACTCATCGTCGACTTCATTCTTCGTGAACGCAAAGATCTGAAAAAAAG
TTCTAGAGATTCCACGCTCAAAGATGGTTCCAATACTTCATTACACGATG
TCAAACATTCAACTCCTATTCGATGTAACAGGACGCGCCAatcccatcaa
aatttaaaggagtgccaaaatgacaaaaatgaagaagatcGTTGGCTTTC
AGACGTCCTAACGGGAAtccaaaaagataaaaaagtaaTCGAGGCGAAAA
CTAAGAAAAACGATTCCAATAATAAAGAAAGCTTCAATTCCTTTGACTCT
GTTGATACTAAGTCTTCTAAAAAGAATGTAGTGAGTCACCAAAGCGCTGA
AATCCTTGCCGAAGTACACCAAAGTTTTGACAAACCTTCAACAAGTGAAA
CGGTTGACTCTGAGTTTTCCTTATCATTCATTGAAGGGATTCgcaaaaag
aaagagaaaaaacaaacagttTCACTTTTTGATAGTCTAACCATCGATGA
TGTAGATTCTACCGAACACTTATCTCACGTTACAACACACATGACATTTG
ACCGTTCTGCAAAGTACCATGATGACGTCAAAAGCATTACACTTGAAACT
GCTATTGAATTGAAaacattgatttttgggaatCCTAAATCAAGCTTCAA
CCCGGAATGGCGTAGACAGGGTTTCTACTTTTCAACGCATCCTGATTTAG
AGTATGGCCTTATGCAAGAGAAGGGAGGGCCTTGCGGTCTCCTAGCTAGC
GTTCAAGCCTGGATTCTTCGCTATCTTCTGTTCAACGAGAATGGCAAGCA
AAATGGAAAAGTACCATTATCACTGACTCGTGAGGAGCAAGAAGAAGCGC
TCATCAAAGCTCTCACACAAATACTATGGCGATCAAAGCAACCACATGAC
TCACAAACAGTCATCGCCATTCCTTCAAAATCACCTAAGTTCAACGCCTC
TCCTTCCACCTACAAAGCGGACAATTTAACCGAGCGATTAGACTTGTACG
AGTGTAAAGAAAAAGTTAAACTagagatgtttttgaaaaagaatttgacG
TTGTTCCAACAAAAAGATGGTATTGTATTGTTTTTATATTCAGTGGTTTT
GACATATGGAATTAAGAATGTGAAGAATAGTACGGATGacgagaaattga
ctttgattggtTGTCATGGTTACTGTACACAAGAAATGGTGAACTTGATG
TTGGTCGGACGCGCGGTCTCTAACGTTTTTGATGGAGATAAGGAATTTGG
CCAGacCCTACTCCATGGAATCCAATCACAAAGCCCTATTGGTTTTCTAT
CCCTTTTCGAACATTACGGTTCGTGTCAAGTTGGTGATCATTACAAAAAC
CCAATCTTCCCAATCTGGGTGGTATGCAGCGAAAGTCATTTTAGCGTTTT
ATTTACTactgatgacgtcacaaaaaatTCCACGTtcgatttgttttatt
ttgatggtTTGGGACAACAAGACGAAGAGATTCGACTCTCGATAACCCCA
GATGGTTTAAAGAAGGTTTTGAACGatgatattgatttgattcccCCGTT
GGATTCTTGCATCCGTACTAAATGGAAAAACGCACTCGTCAGTTGGAACG
ATACTGATCCGTTACTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007647XLOC_007647Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013685-proteinTCONS_00013685-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013685-exon-sc0000171-1491911889:397361..397493TCONS_00013685-exon-sc0000171-1491911889:397361..397493Clytia hemisphaericaexon
TCONS_00013685-exon-sc0000171-1510915933:397361..397493TCONS_00013685-exon-sc0000171-1510915933:397361..397493Clytia hemisphaericaexon
TCONS_00013685-exon-sc0000171-1575043694:397361..397493TCONS_00013685-exon-sc0000171-1575043694:397361..397493Clytia hemisphaericaexon
TCONS_00013685-exon-sc0000171-1491911889:397987..398050TCONS_00013685-exon-sc0000171-1491911889:397987..398050Clytia hemisphaericaexon
TCONS_00013685-exon-sc0000171-1510915933:397987..398050TCONS_00013685-exon-sc0000171-1510915933:397987..398050Clytia hemisphaericaexon
TCONS_00013685-exon-sc0000171-1575043694:397987..398050TCONS_00013685-exon-sc0000171-1575043694:397987..398050Clytia hemisphaericaexon
TCONS_00013685-exon-sc0000171-1491911889:398438..398517TCONS_00013685-exon-sc0000171-1491911889:398438..398517Clytia hemisphaericaexon
TCONS_00013685-exon-sc0000171-1510915933:398438..398517TCONS_00013685-exon-sc0000171-1510915933:398438..398517Clytia hemisphaericaexon
TCONS_00013685-exon-sc0000171-1575043694:398438..398517TCONS_00013685-exon-sc0000171-1575043694:398438..398517Clytia hemisphaericaexon
TCONS_00013685-exon-sc0000171-1491911889:399421..400181TCONS_00013685-exon-sc0000171-1491911889:399421..400181Clytia hemisphaericaexon
TCONS_00013685-exon-sc0000171-1510915933:399421..400181TCONS_00013685-exon-sc0000171-1510915933:399421..400181Clytia hemisphaericaexon
TCONS_00013685-exon-sc0000171-1575043694:399421..400181TCONS_00013685-exon-sc0000171-1575043694:399421..400181Clytia hemisphaericaexon
TCONS_00013685-exon-sc0000171-1491911889:400461..400903TCONS_00013685-exon-sc0000171-1491911889:400461..400903Clytia hemisphaericaexon
TCONS_00013685-exon-sc0000171-1510915933:400461..400903TCONS_00013685-exon-sc0000171-1510915933:400461..400903Clytia hemisphaericaexon
TCONS_00013685-exon-sc0000171-1575043694:400461..400903TCONS_00013685-exon-sc0000171-1575043694:400461..400903Clytia hemisphaericaexon
TCONS_00013685-exon-sc0000171-1491911889:401510..402258TCONS_00013685-exon-sc0000171-1491911889:401510..402258Clytia hemisphaericaexon
TCONS_00013685-exon-sc0000171-1510915933:401510..402258TCONS_00013685-exon-sc0000171-1510915933:401510..402258Clytia hemisphaericaexon
TCONS_00013685-exon-sc0000171-1575043694:401510..402258TCONS_00013685-exon-sc0000171-1575043694:401510..402258Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000171supercontigsc0000171:397361..402258 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.47519	2.19116	2.40502	2.15847	1.3257	1.29078	1.94095	2.42983	1.39053	1.61246	2.09864	2.16288	1.4944	1.4792	1.49521	1.83993	1.72634	2.6339	1.2876	1.5036	1.44268	2.01173	2.15366	2.59846	10.6866	7.2162	1.27575	0.642224	2.3381	2.30275
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR025257DUF4205
IPR006594LisH
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00013685 vs. Swiss-Prot (Human)
Match: MINY4 (Probable ubiquitin carboxyl-terminal hydrolase MINDY-4 OS=Homo sapiens GN=MINDY4 PE=1 SV=2)

HSP 1 Score: 270.396 bits (690), Expect = 1.369e-78
Identity = 158/358 (44.13%), Postives = 217/358 (60.61%), Query Frame = 3 
Query:  807 KSITLETAIELKTLIFGNPKSSFNPEWRRQGFYFSTHPDLEYGLMQEKGGPCGLLASVQAWILRYLLFNENGKQNGKVPLSLTREEQEEALIKALTQILWRSKQPHDSQTVIAIPSKSPKFNASPSTYKADNLTERLDLYECKEKVKLEMFLKKNLTLFQQKD-GIVLFLYSVVLTYGIKNVKNSTDDEKLTLIGCHGYCTQEMVNLMLVGRAVSNVFDGDKEFGQ-----TLLHGIQSQSPIGFLSLFEHYGSCQVGDHYKNPIFPIWVVCSESHFSVLFTTD-----DVTKNSTFDLFYFDGLGQQDEEIRLSITPDGLKKVL-NXXXXXXXXXXSCIRTKWKNALVSWNDTDPLL 1844
            K I L  A E+KTL+FG+    FN EW+ Q F FS    L+YG++Q KGGPCG+LA+VQ  +L+ LLF  + K +    L  +   +   L+ AL  I+WR+      + V+A+ S++ +F+ +   YKAD + E L L+       L  FL++++  F+    G +L   S +L+   + ++   D     LIG HGYCTQE+VNL+L G+AVSNVF+   E        TLL GI ++S IGFLSLFEHY  CQVG   K P FPIWVVCSESHFS+LF+       D      FDL+Y+DGL  Q E+IRL+I  D  + +  + D DL+PPL+ CIRTKWK A V+WN +DP+L
Sbjct:  405 KPIDLSVAKEIKTLLFGSSFCCFNEEWKLQSFSFSNTASLKYGIVQNKGGPCGVLAAVQGCVLQKLLFEGDSKADCAQGLQPSDAHRTRCLVLALADIVWRAG--GRERAVVALASRTQQFSPT-GKYKADGVLETLTLHSLTCYEDLVTFLQQSIHQFEVGPYGCILLTLSAILSRSTELIRQDFDVPTSHLIGAHGYCTQELVNLLLTGKAVSNVFNDVVELDSGDGNITLLRGIAARSDIGFLSLFEHYNMCQVGCFLKTPRFPIWVVCSESHFSILFSLQPGLLRDWRTERLFDLYYYDGLANQQEQIRLTI--DTTQTISEDTDNDLVPPLELCIRTKWKGASVNWNGSDPIL 757
The following BLAST results are available for this feature:
BLAST of TCONS_00013685 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MINY41.369e-7844.13Probable ubiquitin carboxyl-terminal hydrolase MIN... [more]
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