TCONS_00013711 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013711
Unique NameTCONS_00013711
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1541

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013711 ID=TCONS_00013711|Name=TCONS_00013711|organism=Clytia hemisphaerica|type=transcript|length=1541bp
tctttttcaggggGTAGTTGATTTACATTTCCCTTGCAAACTATGGgcaa
aaaactattttcttaTAAACTGCACAACTCACAATTACTATATTCAAACT
TTGAGTTCAATAGCTTTTTTAGAAATTCTGAAAGATGACTGAATGTACCT
TTATAAATGATCTTCAAACACCTTGCCTTGTTCTGGACCACAATAAAGTG
CAGAAGAATGCTGAAAGAATCTTAGCTATGTCTAAACAATATGGTGTTGA
TCTTCGGCCTCATTTTAAGACAACAAAATGTGTAGAGGCAGCTATTTTGC
AGACAGGGGGAAGTAAACGTGGGATGGTAGTCTCCACCTTGGCAGAAGCT
CAATTGCTTTATCAAAATGGTTTTGATGATATATTATTGGGTGTTCCCCT
TTCCATGTCAAAAATGAAACGATGTGCTGATTTAACTGAATATATGGAAA
GGTTTTGTGTGATGGTCGATTCACAGGAAATGGCAGATTTCATCTCAAAC
TCACgtaaaaaatttcctttgaaaaatgggaaaaaatggAATGTGTTTTT
AAAAGTGGACTGCGAAAATGGAAGATGTGGCGTATTCCATGATTCAGATT
CTTCAGTAGATGTTGCTTGTACCTTAAGTAAATCGTCCAATGTTCATTTT
TGTGGACTTTACGCACACTGTGGTGATTCATACCATCAGCCAGGTGTAGA
AGCTATTCATAAAGTGGCAACTAAGACAACCCAGTGTTTGGTAGCATTCA
AAAACAAACTTGAAGCTGCAGGTATTGAGTGTAAAACTTATGGCATAGGA
TCAACCCCTACGTGCAGTCAACCATGTGAAGCTATGAGGCAGCTGACCGA
ATGGCATCCTGGGAATTATATTTTGTATGATCAAATGCAAaaaaacattg
gaTCCTGTTCCAGCGATGATATAGCAGTACAAGTTATTACACGTGTTATT
GGACACTACCCAGATAGCAAAACACCACATATGATTATAGATTGTGGGTT
CACTGCGTTAAGTCTTCACGGCAAAGGTGACTGTTGTGGAATGACACCTG
GCAGTGGTTATGGTTGTATTGTTGGCCACCCTGAACTCAAACTAGTTGGA
ATGAGTCAAGAACATGGAGTTGTTGTTCCCTCCAACGATAATGCTTCATT
GGATTTCAACTGTTACCCTCTTGATACTCTTTTGCGTATTTTGCCTGATC
ATTCTTGTGCTACCTGCGCAATGCACCCAGTGTTTTATGTTGCTGATAAG
GAAGGGAGAATTATTGACCAATGGACGCCTATCAGAGGCTGGTGATAGAA
CATTTCAACACAAAACTTTGTTCCATCTTTCCATTATTCTTTTTGACTGA
TTGAAATTGGTCTATTTCTTTTGGTAGCAGTAACAGAAACTTTTGAACTT
GGTTTTGAACTTGGTTGAATAAGAGCCATCTTTTCTGATATTGACATACT
ATTTACTTTGtctagtttttttgaaattgtttgcATTGATATAAAAGATA
TCACtcatagtttttttttatcttgtaATATGATATAGAAC
Run BLAST on NCBI

protein sequence of TCONS_00013711-protein

>TCONS_00013711-protein ID=TCONS_00013711-protein|Name=TCONS_00013711-protein|organism=Clytia hemisphaerica|type=polypeptide|length=386bp
MTECTFINDLQTPCLVLDHNKVQKNAERILAMSKQYGVDLRPHFKTTKCV
EAAILQTGGSKRGMVVSTLAEAQLLYQNGFDDILLGVPLSMSKMKRCADL
TEYMERFCVMVDSQEMADFISNSRKKFPLKNGKKWNVFLKVDCENGRCGV
FHDSDSSVDVACTLSKSSNVHFCGLYAHCGDSYHQPGVEAIHKVATKTTQ
CLVAFKNKLEAAGIECKTYGIGSTPTCSQPCEAMRQLTEWHPGNYILYDQ
MQKNIGSCSSDDIAVQVITRVIGHYPDSKTPHMIIDCGFTALSLHGKGDC
CGMTPGSGYGCIVGHPELKLVGMSQEHGVVVPSNDNASLDFNCYPLDTLL
RILPDHSCATCAMHPVFYVADKEGRIIDQWTPIRGW
Run BLAST on NCBI

transcript from alignment at sc0000171:210842..212948-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013711 ID=TCONS_00013711|Name=TCONS_00013711|organism=Clytia hemisphaerica|type=transcript|length=2107bp|location=Sequence derived from alignment at sc0000171:210842..212948- (Clytia hemisphaerica)
TCTTTTTCAGGGGGTAGTTGATTTACATTTCCCTTGCAAACTATGGGCAA
AAAACTATTTTCTTATAAACTGCACAACTCACAATTACTATATTCAAACT
TTGAGTTCAATAGCTTTTTTAGAAATTCTGAAAGATGACTGAATGTACCT
TTATAAATGATCTTCAAACACCTTGCCTTGTTCTGGACCACAATAAAGTG
CAGAAGAATGCTGAAAGAATCTTAGCTATGTCTAAACAATATGGTGTTGA
TCTTCGGCCTCATTTTAAGACAACAAAATGTGTAGAGGCAGCTATTTTGC
AGACAGGGGGAAGTAAACGTGGGATGGTAGTCTCCACCTTGGCAGAAGCT
CAATTGCTTTATCAAAATGGTTTTGATGATATATTATTGGGTGTTCCCCT
TTCCATGTCAAAAATGAAACGATGTGCTGATTTAACTGAATATATGGAAA
GGTTTTGTGTGATGGTCGATTCACAGGAAATGGCAGATTTCATCTCAAAC
TCACGTAAAAAATTTCCTTTGAAAAATGGGAAAAAATGGAATGTGTTTTT
AAAAGTGGACTGCGAAAATGGAAGATGTGGCGTATTCCATGATTCAGATT
CTTCAGTAGATGTTGCTTGTACCTTAAGTAAATCGTCCAATGTTCATTTT
TGTGGACTTTACGCACACTGTGGTGATTCATACCATCAGCCAGGTGTAGA
AGCTATTCATAAAGTGGCAACTAAGACAACCCAGTGTTTGGTAGCATTCA
AAAACAAACTTGAAGCTGCAGGTATTGAGTGTAAAACTTATGGCATAGGA
TCAACCCCTACGTGCAGTCAACCATGTGAAGCTATGAGGCAGCTGACCGA
ATGGCATCCTGGGAATTATATTTTGTATGATCAAATGCAAGTAAGTGAAA
AATTCCCTATGAGACCTTGATTACATTAATTTTTATCTTGACCTTTCTTT
CAAAAATTTGCTCTTTTTTCAACAAATTTATTTGCTTTTTCTTGGGATTT
TGGCAAAAACCCTGATTCCAATTTTTTTTGTAAGGACTCAACTTTTCGAA
GTTTACAAAATTGCAAAAAATAAATCCACACAAAACTTAATCCCATTAAG
GCAGTCCAAATCTTCTGTCTGATATACAGTAAGCTACCTCGTGAATGTGA
AAATTGACTTAAATGTTTAATAACCTCCATTTCCATTAATTTTGTTTGTA
TGTGTATATTTGTATGTGTTCTTTTGAAATAAATTGGCCTTTTTAAACTG
TTTTGTAAAGTTTGTGGATGTCTGTGTTTGTAAAAATTGTGTTTTCTTGT
TGTGTCTTTCATTATCGTAGATAATAAAGGATAGCCCTAATCATGAAAAC
CCTAACTGTCCTGTGTAATTTTTGTATGTATAACTGATAAGAATTATGTT
TTTTGTAGCTTTGTTTTGTTTCATTATTTTTTAAATTAATTTGCTTATAC
TTTTAGAAAAACATTGGATCCTGTTCCAGCGATGATATAGCAGTACAAGT
TATTACACGTGTTATTGGACACTACCCAGATAGCAAAACACCACATATGA
TTATAGATTGTGGGTTCACTGCGTTAAGTCTTCACGGCAAAGGTGACTGT
TGTGGAATGACACCTGGCAGTGGTTATGGTTGTATTGTTGGCCACCCTGA
ACTCAAACTAGTTGGAATGAGTCAAGAACATGGAGTTGTTGTTCCCTCCA
ACGATAATGCTTCATTGGATTTCAACTGTTACCCTCTTGATACTCTTTTG
CGTATTTTGCCTGATCATTCTTGTGCTACCTGCGCAATGCACCCAGTGTT
TTATGTTGCTGATAAGGAAGGGAGAATTATTGACCAATGGACGCCTATCA
GAGGCTGGTGATAGAACATTTCAACACAAAACTTTGTTCCATCTTTCCAT
TATTCTTTTTGACTGATTGAAATTGGTCTATTTCTTTTGGTAGCAGTAAC
AGAAACTTTTGAACTTGGTTTTGAACTTGGTTGAATAAGAGCCATCTTTT
CTGATATTGACATACTATTTACTTTGTCTAGTTTTTTTGAAATTGTTTGC
ATTGATATAAAAGATATCACTCATAGTTTTTTTTTATCTTGTAATATGAT
ATAGAAC

Coding sequence (CDS) from alignment at sc0000171:210842..212948-

>TCONS_00013711 ID=TCONS_00013711|Name=TCONS_00013711|organism=Clytia hemisphaerica|type=CDS|length=2322bp|location=Sequence derived from alignment at sc0000171:210842..212948- (Clytia hemisphaerica)
AAAAACATTGGATCCTGTTCCAGCGATGATATAGCAGTACAAGTTATTAC
ACGTGTTATTGGACACTACCCAGATAGCAAAACACCACATATGATTATAG
ATTGTGGGTTCACTGCGTTAAGTCTTCACGGCAAAGGTGACTGTTGTGGA
ATGACACCTGGCAGTGGTTATGGTTGTATTGTTGGCCACCCTGAACTCAA
ACTAGTTGGAATGAGTCAAGAACATGGAGTTGTTGTTCCCTCCAACGATA
ATGCTTCATTGGATTTCAACTGTTACCCTCTTGATACTCTTTTGCGTATT
TTGCCTGATCATTCTTGTGCTACCTGCGCAATGCACCCAGTGTTTTATGT
TGCTGATAAGGAAGGGAGAATTATTGACCAATGGACGCCTATCAGAGGCT
GGTGAATGACTGAATGTACCTTTATAAATGATCTTCAAACACCTTGCCTT
GTTCTGGACCACAATAAAGTGCAGAAGAATGCTGAAAGAATCTTAGCTAT
GTCTAAACAATATGGTGTTGATCTTCGGCCTCATTTTAAGACAACAAAAT
GTGTAGAGGCAGCTATTTTGCAGACAGGGGGAAGTAAACGTGGGATGGTA
GTCTCCACCTTGGCAGAAGCTCAATTGCTTTATCAAAATGGTTTTGATGA
TATATTATTGGGTGTTCCCCTTTCCATGTCAAAAATGAAACGATGTGCTG
ATTTAACTGAATATATGGAAAGGTTTTGTGTGATGGTCGATTCACAGGAA
ATGGCAGATTTCATCTCAAACTCACGTAAAAAATTTCCTTTGAAAAATGG
GAAAAAATGGAATGTGTTTTTAAAAGTGGACTGCGAAAATGGAAGATGTG
GCGTATTCCATGATTCAGATTCTTCAGTAGATGTTGCTTGTACCTTAAGT
AAATCGTCCAATGTTCATTTTTGTGGACTTTACGCACACTGTGGTGATTC
ATACCATCAGCCAGGTGTAGAAGCTATTCATAAAGTGGCAACTAAGACAA
CCCAGTGTTTGGTAGCATTCAAAAACAAACTTGAAGCTGCAGGTATTGAG
TGTAAAACTTATGGCATAGGATCAACCCCTACGTGCAGTCAACCATGTGA
AGCTATGAGGCAGCTGACCGAATGGCATCCTGGGAATTATATTTTGTATG
ATCAAATGCAAAAAAACATTGGATCCTGTTCCAGCGATGATATAGCAGTA
CAAGTTATTACACGTGTTATTGGACACTACCCAGATAGCAAAACACCACA
TATGATTATAGATTGTGGGTTCACTGCGTTAAGTCTTCACGGCAAAGGTG
ACTGTTGTGGAATGACACCTGGCAGTGGTTATGGTTGTATTGTTGGCCAC
CCTGAACTCAAACTAGTTGGAATGAGTCAAGAACATGGAGTTGTTGTTCC
CTCCAACGATAATGCTTCATTGGATTTCAACTGTTACCCTCTTGATACTC
TTTTGCGTATTTTGCCTGATCATTCTTGTGCTACCTGCGCAATGCACCCA
GTGTTTTATGTTGCTGATAAGGAAGGGAGAATTATTGACCAATGGACGCC
TATCAGAGGCTGGTGAATGACTGAATGTACCTTTATAAATGATCTTCAAA
CACCTTGCCTTGTTCTGGACCACAATAAAGTGCAGAAGAATGCTGAAAGA
ATCTTAGCTATGTCTAAACAATATGGTGTTGATCTTCGGCCTCATTTTAA
GACAACAAAATGTGTAGAGGCAGCTATTTTGCAGACAGGGGGAAGTAAAC
GTGGGATGGTAGTCTCCACCTTGGCAGAAGCTCAATTGCTTTATCAAAAT
GGTTTTGATGATATATTATTGGGTGTTCCCCTTTCCATGTCAAAAATGAA
ACGATGTGCTGATTTAACTGAATATATGGAAAGGTTTTGTGTGATGGTCG
ATTCACAGGAAATGGCAGATTTCATCTCAAACTCACGTAAAAAATTTCCT
TTGAAAAATGGGAAAAAATGGAATGTGTTTTTAAAAGTGGACTGCGAAAA
TGGAAGATGTGGCGTATTCCATGATTCAGATTCTTCAGTAGATGTTGCTT
GTACCTTAAGTAAATCGTCCAATGTTCATTTTTGTGGACTTTACGCACAC
TGTGGTGATTCATACCATCAGCCAGGTGTAGAAGCTATTCATAAAGTGGC
AACTAAGACAACCCAGTGTTTGGTAGCATTCAAAAACAAACTTGAAGCTG
CAGGTATTGAGTGTAAAACTTATGGCATAGGATCAACCCCTACGTGCAGT
CAACCATGTGAAGCTATGAGGCAGCTGACCGAATGGCATCCTGGGAATTA
TATTTTGTATGATCAAATGCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007656XLOC_007656Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013711-proteinTCONS_00013711-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013711-exon-sc0000171-1575043694:212059..212948TCONS_00013711-exon-sc0000171-1575043694:212059..212948Clytia hemisphaericaexon
TCONS_00013711-exon-sc0000171-1575043694:210842..211492TCONS_00013711-exon-sc0000171-1575043694:210842..211492Clytia hemisphaericaexon
TCONS_00013711-exon-sc0000171-1510915933:212059..212948TCONS_00013711-exon-sc0000171-1510915933:212059..212948Clytia hemisphaericaexon
TCONS_00013711-exon-sc0000171-1510915933:210842..211492TCONS_00013711-exon-sc0000171-1510915933:210842..211492Clytia hemisphaericaexon
TCONS_00013711-exon-sc0000171-1491911889:212059..212948TCONS_00013711-exon-sc0000171-1491911889:212059..212948Clytia hemisphaericaexon
TCONS_00013711-exon-sc0000171-1491911889:210842..211492TCONS_00013711-exon-sc0000171-1491911889:210842..211492Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000171supercontigsc0000171:210842..212948 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.8866	16.1554	3.92047	3.68804	2.8735	2.63966	3.11615	3.75082	3.90539	3.19717	2.50958	2.1996	4.32223	3.47689	9.02915	11.9457	15.316	12.2964	1.13254	1.83694	6.05176	7.68734	12.0629	13.6879	3.31722	2.78189	5.66088	3.93668	8.10018	8.16244
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR026956D-ser_dehydrat-like_dom
IPR001608Ala_racemase_N
IPR029066PLP-binding_barrel
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013711 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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