TCONS_00013826 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013826
Unique NameTCONS_00013826
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1300

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013826 ID=TCONS_00013826|Name=TCONS_00013826|organism=Clytia hemisphaerica|type=transcript|length=1300bp
GCCAAATAAATCAAAAGTGAAAGTTGTTTTGGAGCTCATTATGGAAAAAA
GAAGTCAGATCTGGTCAGATGACCTGATCCTGATGACAGTGAGGACAGGC
TGGAAAGTTTTGACTATTTAATCACCAGTTTATCTTATGGCATGATGTTA
AACATGAATCATCAAAGatatcttcttcttcttatCACTAATCTTTATAT
TGCTCATGGAAGAATCCTCGAAAATGGCTACCAAGAATTCACTATCACTT
TGCCAAAAGTCATCAGAAGAAAAGAATGGCGGTGGTGATGGGGAAGTGAA
ATCATTGGCCATGGAGATGAAGTCGTTCAACTTAACAAAATGGATGTATG
AAGATTCTCTTATCACATACACCATGCATTGCAGTCCAGCAGGAGAGAAG
AAACATTTTTCTGTCAAGATTTACCTTTTTCATCACTTCTGTCCTCTTCC
CAGAATTATGTATTCATTGCTGGACAAAGACTACAACAATATCCCATGTC
ACGACCATGCTTTATCTACCCTGGGTaaaaaaatcagaagaGATATAGAA
CATGCTATTCGAAGGCAAAGAGCTGAAGACAACACCGAACCGTACCCGCA
AAAATGGGCAAAGCTCTTCCAACAGTAAAGATGGTCAAAACTAATAAACC
TGTAAAAAATGAACCTGCCTCAGCTGCAGTTCCAGTCCCAGTTGTAAAAG
CTGCATCTAGTTAAATGAAAAGAAACAACAAAGGATTCATATAAGAAAGA
TCCGCTCGCACATCAAGTTGGCAGAAACGAATTGCGTGCAGATATGAATG
GTCTATTTGTCGTCGGCCTTATGTTCAAATCTACAGATGAAGTGACAATT
AAAGCGCGAATTGATTCGGTGCACAAGGGATCATACCTGTCAGCAATGAT
TTACAAACTTCTCTCGttttatGGTGTAATGTCGTTGATTTATTTGGCTT
ATGCTATTAGTTGGTTTATTGACACTTGTTGTAAATATTGGAAAGACTTG
TTACGCGTACAATTTTGGATTGGTGGAGTTATCGCACTTGGGATGTTTGA
AAACGCACTATTTTATTCTGCATACCAAAGTATCAGTCACTATGGCAAAG
GTTTGTCTTTTTCAAttaagttattttttccgaggtctgaatcgctgctt
CGAAAACGCTGAGCTTGCATAAAGATTGCAGTTATTCAACCAATCCTTAA
TACAAAAGGTAGCGCGTGAGGTAACTTAATTGTTCGATCcaacactgcaa
tgtcttcacttcaatataacattttaatgaccagagaGTTAACAATGTTT
Run BLAST on NCBI

protein sequence of TCONS_00013826-protein

>TCONS_00013826-protein ID=TCONS_00013826-protein|Name=TCONS_00013826-protein|organism=Clytia hemisphaerica|type=polypeptide|length=140bp
MEESSKMATKNSLSLCQKSSEEKNGGGDGEVKSLAMEMKSFNLTKWMYED
SLITYTMHCSPAGEKKHFSVKIYLFHHFCPLPRIMYSLLDKDYNNIPCHD
HALSTLGKKIRRDIEHAIRRQRAEDNTEPYPQKWAKLFQQ
Run BLAST on NCBI

transcript from alignment at sc0000174:87862..108001+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013826 ID=TCONS_00013826|Name=TCONS_00013826|organism=Clytia hemisphaerica|type=transcript|length=20140bp|location=Sequence derived from alignment at sc0000174:87862..108001+ (Clytia hemisphaerica)
GCCAAATAAATCAAAAGTGAAAGTTGTTTTGGAGCTCATTATGGAAAAAA
GAAGTCAGATCTGGTCAGATGACCTGATCCTGATGACAGTGAGGACAGGC
TGGAAAGTTTTGACTATTTAATCACCAGTTTATCTTATGGCATGATGTTA
AACATGAATCATCAAAGatatcttcttcttcttatCACTAATCTTTATAT
TGCTCATGGAAGAATCCTCGAAAATGGCTACCAAGAATTCACTATCACTT
TGCCAAAAGTCATCAGAAGAAAAGAATGGCGGTGGTGATGGGGAAGTGAA
ATCATTGGCCATGGAGATGAAGGTATTtaattttgcctttttttcattta
ttttgggATAGCTTTGAGATTCCACAGGCTTTTTAAAGCCTTactaaggc
ggcaatcacaaatatcttcgtttcgcgtcgtCGCCCCCCGACCGACTTTG
AAAATTGAGtaaattgagtcggtgagttggtaaatttgtcggaatttttc
tgtcaatgacctttccttcgttcaaaaattttattattgccaattttttg
cgagcgatttctagcgcatttgcAGCATTTTGACTTGTGCTcctgtttat
cattacatgtgcCATACGACCCACGGtgcacggcatggcccgaacatgtt
cgggcctgcccggaccatgctcgggccacaaaaaagtattattaacattt
tgttcggaccatgttcgggcctgttcggaccatgctcgggccacaaaaaa
gtattattaacattttgttcggaccatgttcgggccatgtattatttaca
attgatacggatttgctcgggccatgttcgggccatatATAACCACAACT
TCAATCCCTCGATTTCACTTCCCTATCCGCCAGATTTACCGCAGGTTTAG
TGAAGTAGTTTTTAACATTAAAATGAATAAAGTGCGactgttaaatcttt
tttatgaaaacatAAGCTATACGAACAACAGGCTTTGGTAACCAAAGTGT
CAAAAAAGCAGGTTATGGACGTCCCCGTAAAGTTCTACTCTAAAACCCTC
AAACAATTTGTGTTTCTaaagaattttttgtaaatataatAAGTACTATT
ATAAAGGCTCCCCGCCCCAGCGGTAAGTCTGATCACAACATCGCgcaaat
tgttttctttaatcgCGATTACACAAATCAACAACAAAATGGATAATCAC
gtatccctttgaaaaagttttaaaatcacGCCTCACAGCTCAAAAACCTT
TCAAACCACGACCTTTGATCACGCAATCACAAAAACCGCTTAAAGGGCCT
CATTAGAATTTAAGGAAATTTCCGTTATCAATTGAAAGTTTTAAGCAAAT
GTGAACGCAATTTCCCCGCAATCATTATTATACCAATTATCTATTCTCTG
TCtagggaacgggataaagaataaaaagaagaccatattatgtaagattc
aaatcattttttttaataattttcctaacttaattggaaaatagatgatt
aacttttatatttgaacaatatatatttgaataaagatgaagatttttaa
atttgtttgctaaaataaggaatttaaaatataaatattgggccttgaaa
ttacacgcgcgatcgtagtaagttttcgaaaatctggcccgaacatggtc
cgaaactgcgcggACCACGCGtgggccatttttaaaaagcattaatcaag
aggcccgaacatgttcaggccatgccgtgggtcgttgtgccattttgggg
tcggaggtcacagtgttcttcaaaggtcataattttaaaccacccattac
acgcGATTGTTTTGGcagctggctggctggcagttttcTCCAAGAATGCA
CTCTAAAAAcggatggaaaaatggaaacccgaaaatttttacgaccgact
gaccgaccgactcactttttagacccaacgaggacgcccaatgaagatat
ttgtgattgccgcctaagtTGAAGTTCCTTACCAAAGGCTGAAGAAGGGC
CGTTCATAAAAAATTGGTTGGTTCCCGTTGGTTCCCGTCACCCGACGATT
TGAACTGAAGAATTAGAGTCTGAGAGTCGGAAACCACTTTTCCTGACAGC
TGAAACTCCACCATCACCCTCCATGTTTTCTCTTTTGAGAGAAAGAGCAA
ACGCTAATCTTgtccaaaaaaacaattcaaaaccCATTAATTCCGttttt
ccccaattttcaaGTCCGATTTTACATTGCGGACCATAtggaagcatcaa
aacaaaccagcgGAGCTTTTGTGAAGTGAAAAAGAGGCTTAGGGCAATCA
AACGTCCCTTTACCACCCTTTTCTTCGGACTGTTTCgttcaaacagaaaa
tattttttgcccGACCGACCCACTTTTTGATGGttgaaatgacgggaacc
aaggGATTTTTTACGAACGGCCAAGACAGTCTAGACTTAAAACTCCCTAT
CAGGACAGGCAAATTTCCAGGTTTTGAGCTGCCACCATTTTTATTTCAAC
GATTGAGTTTGACTTCAGTTCGAAGAGCAAAATAATCAACCCAGGTTCTG
TTTAATTAGTTGGAAACtattaccgtaacttggtctaatgtcgacacccc
tcctctaattctgacaccctttttatcagctgaaatttatagaaaggtcg
aaactgtttttctttgtttattgGTCAGAGagaaataatcctttttcaat
cagtgattcaagctttcatattattcctttctctaaagaagggtgtcgga
attagaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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GCTATGGAACGTTCGTGAACGTTCAGGAACGTCTCAAGAACGCTCCGTTT
TAtttgtacttcaaatcgcttgtgATGACACATTTTGTCaaaatcctttt
cattggataaataccactaaagtATACAAGagaagtaaacataaatttat
cacCCGCGAGCACAGCTCAGCTAAGCGcacctttcttaaaaattcactat
CTAAGAATTGGaacgggcaaagattaccgcgcgggctgatagcggacaaa
ggtagatattttcagttataatccaaggtagagcAAACTAAatatagaaa
gggggtattttttagtgctatacgatgatcggtattttttttgaattcta
tgtttagatttttctacccagccctgttgctatgtacgcgcgctctgttg
ctaagacctttgcttgttGAAATTCatgtgcgtttggtttgggaacgcga
aacacgaatgcgaactacccatgtctaaacttttcaatatatctccagaa
ctaacagagtttttaaaattctgtaaaaagttccaagttcctgaatagtt
ttactatgttctgtgaaagaatcataaccatcagtcaaatactcgttcat
ctatttaagattgaagacaaaaatttgtgaagaaaaataaaccttgagca
caaaaaatgcttttttaatcaCTTTTTTCCACCAAAGAACAAATAATNGA
TGAGCAagggccacccctactgaaaatttcagatcaaaacaaacaaggaa
ttattCCTGTAACTCTaggaaattggaaaaagctggtttttgactgtttc
tgatccttaagtgctattttttggtataaaagctatgcaatttatgtttg
gatttctagaaagcttacccattcattgtcaatatattttttatttgaca
gtaatctcttcatggaataaaaagatcttgtagagtaatttttcaaattt
tttttgccaaaatcaattttcgcatttcgcaattttaccctacgcaaacg
cacgtgaattggaagtgaaaccaaaataatttagcccACACTGCCATTCG
CATAACGCATCAATAAAAGTGAAAGGAGGTCCTGACTGATCTGGCCTGTC
AGTTTAAGCTTAAtttcctatatcaggattagaaacttaattttttgatt
CTGAGACCTTTTCGATGGTAATGTTTGAAAGCCATAATTTAACTTGTTTG
TTCAATAAGAAGGCACTATACTAATGATGTAAAGTAGCTATTTGACAGGT
ATAATTTAGCTAATAGTATAACTTGTGGATTGACctttttgaaattaaac
atacatttgtaaaaatatttgttttttatcttcattttattCTAAATCTA
GGTGTAGGAGGCTTTATTTTGATCTGTCGTTAAATCAATTAACTTTTTAG
AATGCATGGACAAAGgtgtattttcaatttaatttgactttGGCCCCTTT
AAAGCTTAGGCATTTTTATTATGAAATACTTTAATAAATAGATGgtcttt
ttaaatttaaagaaNTTTTGATCTGTCGTTAAATCAATTAACTTTTTAGA
ATGCATGGACAAAGgtgtattttcaatttaatttgactttGGCCCCTTTA
AAGCTTAGGCATTTTTATTATGAAATACTTTAATAAATAGATGGTCTTAA
ATTTAAAGATAGTTGCTTTTTATCAAAGCTCCAGTATTGAGCCTTTTTTA
TTTGTAACAAGAGACccaaagattttaaataaacttaaaaaatcaGTGTT
TTGATAGAAAAGTGCTTTGAAAATCTTTGGGTTCGTTAGATAGATTGTTG
TTTGTCAAATGTTTGATGGACAAAATTCAATTAATTCTTGaagaatctta
taaaaaatatcagtCTTTTGACCATAAAGTCTTTTCACCATTTttaccat
tcaaaaagtacgtagaCTCTGAGGAGGGGGGGAGTGGGTCCTTtgaaaag
cctaaaaaagcgTACGTGGGGAGGGGGTCAATCAAGAAAATGTACCTACG
CTTTgcaattttttccaaactgttttCCCCAGTTTTTTCTAACTTTCtat
ttgaaaagtcaaaatattataaaCCTTTTAAACCCATCTTACTTGTGTTA
TCCATATGTCACCCTATTATAATCTTTAAGTTTTTTGGACNNNNNNNNNN
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gattGGAAAAGCGTACAAGGGTGGAGGGGTTGGTCGAATTTTGCTTACTT
TTGAGCGTATGTACTTTTGAATGGCCCCTTACCTTATTCACAGCCCTCTC
TCGAAATAGTCTCAGTATTTTGATCAGCCTTTAAATTAACCATATACACT
TCCATACTTTTACTGCACTGCTACTGTTGCAAATTTTAAGGGTATGTTCA
GCTCAAATATGGAAAGTTTTGTCATAATGAAATCTCTATTCATCTTTTTG
TAGTCGTTCAACTTAACAAAATGGATGTATGAAGATTCTCTTATCACATA
CACCATGCATTGCAGTCCAGCAGGAGAGAAGAAACATTTTTCTGTCAAGA
TTTACCTTTTTCATCACTTCTGTCCTCTTCCCAGAATTATGTATTCATTG
GTAAGTATATAAAGTCAATGTcagatttatttatttgtttctttattATT
CAAAAGAAAGGAAGAGAAGTGAGCTTCCATGGTCttacaatatttttttc
gttttaCTGATTTAATAAACAACAAGTTTTTGATTCTACACATTACTGTC
TtgaattttttagaaacttGACCAGTGGAGAGGACTTAATTTAAAAGGCT
GAGATCTAATGAAgtattcaaatcattctttcaaaaggttcttgtataaa
gtatattcattttttattttattctttttcagCTGGACAAAGACTACAAC
AATATCCCATGTCacgaccactgacctttatataaccctggaccaaacaa
tatctgccatctttgattgtccagggtatatataaaggtcagtgNATAAA
gtatattcattttttattttattctttttcagCTGGACAAAGACTACAAC
AATATCCCATGTCACGACCATGCTTTATCTACCCTGGGTGTAAGTTTTCA
CCCAATAAtactctttttgaaaacaaatattGCACATTGGTCAAATAAAT
CTTCAGTTAGGGTGCAAGTGCAAAGTTTTGATTTGTAAGTACTGAGCTTT
GGCTTGGCTGACTATTTTTTCTGGAGTGTCCTTGAAGGTTATTCCTCCTC
CGTCTTACCACCCTGGTTCTAAATTCTGAGGTGCCTATCATTTTTCTAAG
GGTACTTTTGAAATTAACAGGTTAATGGAACGGATTTGAATTCAAGTAAA
ACTCTTTTAAATGAATgataattttaaattaattaaGTAATATACAAACT
AATTCTAATAGTATATCAGCAATCaagttttaagcaattttaaattGGTA
TTTAAGAGGTCTTCCTATCCATACCTAGATCTTTCTCCCCTCCTCTGTTG
CTTCCATCCTTggcatcaaaatttttcactcATCCCTCAAAACCTATTCT
CCATTCCAAACCTATTTTCCATGAATCCAGAAGGGGAAGGAAACTATTCC
TAACtacaaatatttctaaaattattaTACTGCATTTTGCTGAATTTTGC
TGAGTAGATTCTACAATCAAACCATCAGAGTATAAATTTTCTCCTTACAG
TGCAATATGTGTATGTTGTATTTCTCtcgctttcagaaaaaaatcagaag
aGATATAGAACATGCTATTCGAAGGCAAAGAGCTGAAGACAACACCGAAC
CGTACCCGGTAAGTTTTTAATTAATCGCTGAAAAGTGGATTCCTTTAAGT
ATcaactttttcatcttttaaaatttttaatgaaaaacgagTACAAAAAT
TACCACTGGCACGGCACAAGAAATCTCAAAAGAAACCAGCATTGAAAACA
ACATCGAAACCTCTTCCAACAGCAAAAATGGGCAAAGCTCTTCCAACAGT
AAAGATGGTCAAAACTAATAAACCTGTAAAAAATGAACCTGCCTCAGCTG
CAGTTCCAGTCCCAGTTGTAAAAGCTGCATCTAGTTAAATGAAAAGAAAC
AACAAAGGATTCATATAAGAAAGATCCGCTCGCACATCAAGTTGGCGTAA
Gtttgctttttggacctaccccggtggggtggaggtcctataaattaacc
cgtgttcgttagttagttagtaagttagttaccaacttttctcgagattg
gctcattcaatttttctgattttttgcacaaaggtgcattactataaacc
ctcgaatgtgacggagcccgattttNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNTCCCCTATTCGGGGTTCAAATCATGTC
AGggacctttcttcaaaagcttgccagtcgtcagtaaatggttgaattga
cttcaaataaaaaacggatgcaattTCACATATCTCTGAAAAGATTCCAA
AAATAATATTCAGCTCTATCTATTACTAGAAATAACTGACGCTTAAAAGT
GCCCCTTGCATTCGTTTAGATTAATACTTATCAGATTTGTGAAACGAGAA
ATAACTTTATAGAAACATTAATGGTTTTTCAAGGTAAAGAAAAGCAATCC
ATAGCATAAAACTACTgtatatgttttatttttgGTCGCCCCACGCTAAG
TGGAGGAGACCTTTAAATTCGGTGTTTCTCGATGATAATAagactttttt
gtgaaagtttggtTGCCCTATTCGGAATTAAAACTTTGGTGAATCGGGAA
GTTATTTCCCGCGTAAATTTTTCCATAAGCCGCTTTATCTCCGTTATATT
ACTCCGCGCTATCTTATCAGACAGTATTTGCGATATAAAGATTCTAATTA
GCTCCGTAGTAATTAGCGCAATTGTTTTATGAAATTTCTAAATAACGGAG
ATGATTAGAAGCCTCGTGAACGTTGTTGAAAGTTTATGTTTATGCACAAT
GCCGGGACAGTGCAAGCAGCAGATAATTCTTGATGTAGATCTCAtctcaa
attacattcattgatatTTATCCATTCGTGACGTTGTTGAAAACAAACAC
AAACCTCTTTTCACTAGAATCACTTTTGAGGTTAAAGATTTAGAAGATGG
ATGTTGTTGGTAattccaaaagaaaaatataaagacaGAATTACTCAAAA
TCTATGATAATAGTTGATAGCATGTCCTAACCAACATCACTCACTACATA
TGGCAACCTAACCAATTAATTACTGGATCAAGTTATACCATGACTTTCTC
TANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNTAGATTTGctataataatttattttaacTTTCTAACA
ACAATTTTTTATTGTACAAGCAAGAAACATTCATTAATATTACATTGTTA
AACATGATAATTAAGTGACTGTCTTGAATAAacttgaatgtctccttaat
tcgaacaattTATTTATCCCTTTAGAacaaatttaggctattttcacCTT
TATCCCTAATgttagttttaaaaattgataacTTTCTGAAAACCTTTAAG
ATTTAAGTAATGACAAAAGCAACACAAATATTACATACAcaaatatatgt
ttttttttataagcaagtgtataccccttggtcaggctcgtgtatgctta
agttctcaaagtatccaggcatagtttatgcttattatatgcttaagaat
tatgcttaagaattatgcttatgattcaccccgagccaagttttttaatg
aaattttagaaattttgtaaaaaatttgttcagattttgggagcagtgga
atgtagctagccgtggaatgtctaattttttacttgacctctaccaaacc
agttaaaattgaaacaaaaacagataaaaattactacttgaaaaatattt
taggctgacatatatgctcatgttatgcttaggaattctgcaaatctgag
ccttcatatgcttataagcgttatgcttataaaaaaacaaaacatgtatt
acattgtttttgaagaatatttttcagcTCATTTTATGTTTTCTAACATT
AACTTAATAAAATcattaataaaatcaatttcagCCATTTCGACATCAAA
AGCAGGTTGTTTTTTAACGATTTTGTACATTCGCAAATAAATCACTTGTT
ACACTGTTAAGCTTTttgtcttttacttttttcaaacttttaaactCTTT
AAGCTACCTTCATTGggcgaccttccagcgcagctggtttattgttttta
ttttccatttgtTTCTGGGTTTTCAATAATTGAAATCATCGTTTATACCg
gattttcaaagaattctgtttgatagaaatccaaaaaagtgaaacaaccg
aacaaatgaagtatttttatgaattatttATATTTATCACCTATTCATAA
AAGGTGTATTCAGAACACAAGGCATGAAGTATTCAAGACACAGCAGGAaa
atataaacgactggaagtccatttcttttgtttcttttaagcGAACTTAt
acattttaaataactttAATGATTTGAcacgaatttttttatggttaGAA
AAAAATAGTGCGTTGAAGTTCAAAGTTAGTCCAATAACACTATCAAAGTT
TGAAACCGATACTTTCTAAAACTATTCGATACTTCCAGGTTAaactttta
agatatttgacgGAAGCTTGATAAACTGACGGGACAATTTTGTCTCTAGT
TTCTATTGATATATAAGCCAGTTGAAAAGAGTTAAACAAGAGAGAATTTC
GACGAAGTTTTTTCGTCGTTAACAAATTACTCCAATGAGGTATCTTGTCA
AATTCTATTGTCTTTGTTTACGATTTAAACGTAGCGGCAACGAAGCTCTC
AAAGAAAAAGGAGATAgacttccagtcgtttatattttcattaAGACAGt
gactttttcgatttttcctttttgaccttttcgatattttcgatttttga
ttatttcgatcttatcagttagggtcagggttggagctcgaaacattaCG
TTCATATTTAGATAATCTGTAAAGTGTAGAAGAGGCTTTCTGGGGGAAAT
TGTATACTCTTCGGAATAGGACCTTTCTCCCTCTcacaaaacagtttttt
ataagTAAATCACCTAGCATAGCTTTGAAatctatttttcattcaaaaaa
agacTCTTCATAAATTTGCAGGATCCTAAATATTCTTCCGAGTTACTGAA
TCTTATTATTTTAAGATTCTGAATtgggcacacaacgttatttcaacatt
TATTTTAACGTCCGTCAGATAACGTTCTGATCAGGTCTGCACATACCCGA
CATTCTCCAACCCTTATACAATCTCCAAATTTTCAGGCCACGTGAAATTT
TAAGGCGTGTGAAAATTTAGGGCGCGTAAAATTTTTAGGGTGCATGAAAA
TATGAAGGCGCGTGAAAATTTAGGGCGCGTAAAATCTTTAGGGCGCGTAA
AATCTTTAGGGCGCGTGAAAATTTTAGGGTGCGTAGAAATATGAAGGCGC
GTGAAAATTTAGGGCACGTGAAAATTTAGGGCTCGTGAAAATTTAAGGGC
GCAGAGGCACATAGGGTGCGTAGGGTGCGGAGGCGCGGAGAAAAATGAGG
GCGCGGAGGCGTGTAAGGTGcgtgatttagcagactctcctataaattaa
cctttgttcgttcgtccgtccgtccgtccgtccgtccgttcttTCGtaag
ttaccaacttttctcaggattgaatcataggaatcttttaatttttggta
caaaggtgcaaaatggtggtggccaaaatgtgacggagcctgattttcga
aagaaaaaggcaaatttgggcccaaaaacggctaaaaaactggttttttg
gacttggtgaaatattggatcattaactttttctgattttttgcatgaaa
gtagggtaccatcataggtaaaagacggctcaagcagatttttgcaaaaa
aaaatttgttggctcaaaaaacgcatgtttatctataagaatcactatta
ataagcatacatcaatgttcttagtcaaattactcaatttttttatgaga
tagatgtttttttgctcataagggattacttttagagagtatgtgtgttt
agacatgaaattttggttgcttggctagtctagcaagctagaagactaat
ttatacatagtagaaataaagcaaaaagtaattttagtcgtttagaaacc
tttgtgcactaactccaaacaaaagaaaagtgtcaatattgcaattataa
ttttttcccgctcaaaatagttcttgagaaaaaaaatgtgtgtggatatg
tgtattgaaagtttttcgttctgagttgatttctttttgagagtttgtta
ttgcttgataaattgttttctcgctacgcaagtttctgtgtagctagccg
gggtatctataaggctggaacaccggattctgccagtcgtttatacaaac
taaatcccgtattattattattatgagaAGTTAATACATTGTACTAATTT
CAGTGGTAAAAACACACACCCAGTGAATTCCCATGTATATTTGGCCTAAT
TTGCCAGGTCCAAGCTGGTCCGAAACCTTCAAGTCAAGGCTGGTTAAGCT
ATACAAATTGGTACACTGATTTTCTCCCAATGTTTCCTGTTTACNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNagaaacaaacgactaattttaatagattgtcactatttgtgt
tctgaatgattgtttaacggtcatgctcacgtagatatcaattatatttc
taaaatgcataaccaggtaggtccatgaAATTATCACTTGTTTTCTATAT
AGAAGAAGAAGGCAACTTTTACACAGAGTCCGAAAAAATGAATTGAGATC
TCAGATTGTTCCTAAAGTTTCAAGATCTCCGCATTTCAGTCATTTTATAA
GCTTTGATCAAATCGAATTTTGATTCTCCCCTTTCTCTTATAATGATTTT
TCTCTGCAATGCGCTTGCAGTTTTCTGTTTGCAAAGgcaatttcaataaa
aacagggGGGAATTGCTTAAAAGGGTCCAGGACAAATTGGGTACCAGAGg
gtctaaaattttcaaaaatcaaccaTCTTCCAAGCCCCTTTCAAGACTCT
TCTTGAGACTTCATTATTAAATAGCTTTTCATACTTTCAAACAACTTATT
ACAGGaatcttttatattttgataaCTATTGAACTCCTTTATTTTCAGAG
AAACGAATTGCGTGCAGATATGAATGGTCTATTTGTCGTCGGCCTTATGT
TCAAATCTACAGATGAAGTGACAATTAAAGGTAATTCTAAACGGTATTTG
ACAAACCCCAATTTTATTGGTCGACCTTAACTAAATTGAATaaatattgg
aagtttatcgtggcttgaaTCACGatatttacgtttggctacatttcgag
agattcttctcccatcatcgggctaATAATTGAATAAAGTTGAAAACATA
CAATTAGAAGTTATTCCATTACAATATTGCTTCGGATTGCttgaaaagta
tgaaaaatcAGGTAAACTCCTCTTCATATTTTTAGCacttttttctgact
tttccCGCCTTAAAATAATATGATTTCTAACCATTTGTATTTTTAGCGCG
AATTGATTCGGTGCACAAGGGATCATACCTGTCAGCAATGATTTACAAAC
TTCTCTCGGTAAGCTTATATTTACCTCAATACAATTGATTTCTAGTAGGG
CAGCGTCCAATGACCGGAAAACcataaaaaagaccaaaaaaaagtctttg
actttctgtaaagaaagtaaaatataatttttatacaCAAGTAAAAACCC
TAGTAAAAATCTTCATGATTTTATCTTTTACTGCTGTAACcttgggcttt
tttctttttagttttatGGTGTAATGTCGTTGATTTATTTGGCTTATGCT
ATTAGTTGGTTTATTGACACTTGTTGTAAATATTGGAAAGACTTGTTACG
CGTACAATTTTGGATTGGTGGAGTTATCGCACTTGGTATGTTGATAAATG
TTTGTTCACTTTTTTCATAGTGAAAGCAGGATAGAATGATTATAGTTGta
tttcatgatatgcaccactagagagtcttctgagaacttttaagaTTTTC
GTTTGTCTAGGATAAGTGTCAAAATTCCGATTAGTTTACAATTTGGAAAC
CGCTTCCGAAAGAACTAGTCTAATTTACACTTACATCGTTTCCACATGAA
AACCAGAAGAGTGTACGCTTATATCCTTAACAGACTTTTGATGTAGTTGC
AAAGACTTCTTTTGTTCCTGAGTAAATCTCAGCGGTAGTCTGGACCAACC
CTTTCTCAGTTTCAAGACTAGCTTTTAATGAAAGCTTattaatatttcaa
ttttactattttataaaatattggtCAACCAATACGCTAGAAAGACATTT
CAATCACACAGTCTTCTACCATGTTTCATATTTTAGATTTCTTCCAATAT
ATCCCGTCCACTTTAGGAGCTCACTATGATCGTAATCATGGAGGtagaaa
aataactattttaCAGGTTTAAGAATCATTGCTTAGTgcttttattatta
ttactttatttaaatttttctgctttACAGGGATGTTTGAAAACGCACTA
TTTTATTCTGCATACCAAAGTATCAGTCACTATGGCAAAGGTTTGTCTTT
TTCAAttaagttattttttccgaggtctgaatcgctgcttCGAAAACGCT
GAGCTTGCATAAAGATTGCAGTTATTCAACCAATCCTTAATACAAAAGGT
AGCGCGTGAGGTAACTTAATTGTTCGATCcaacactgcaatgtcttcact
tcaatataacattttaatgaccagagaGTTAACAATGTTT

Coding sequence (CDS) from alignment at sc0000174:87862..108001+

>TCONS_00013826 ID=TCONS_00013826|Name=TCONS_00013826|organism=Clytia hemisphaerica|type=CDS|length=2115bp|location=Sequence derived from alignment at sc0000174:87862..108001+ (Clytia hemisphaerica)
ATGGAAGAATCCTCGAAAATGGCTACCAAGAATTCACTATCACTTTGCCA
AAAGTCATCAGAAGAAAAGAATGGCGGTGGTGATGGGGAAGTGAAATCAT
TGGCCATGGAGATGAAGTCGTTCAACTTAACAAAATGGATGTATGAAGAT
TCTCTTATCACATACACCATGCATTGCAGTCCAGCAGGAGAGAAGAAACA
TTTTTCTGTCAAGATTTACCTTTTTCATCACTTCTGTCCTCTTCCCAGAA
TTATGTATTCATTGCTGGACAAAGACTACAACAATATCCCATGTCACGAC
CATGCTTTATCTACCCTGGGTaaaaaaatcagaagaGATATAGAACATGC
TATTCGAAGGCAAAGAGCTGAAGACAACACCGAACCGTACCCGCAAAAAT
GGGCAAAGCTCTTCCAACAGTAAATGGAAGAATCCTCGAAAATGGCTACC
AAGAATTCACTATCACTTTGCCAAAAGTCATCAGAAGAAAAGAATGGCGG
TGGTGATGGGGAAGTGAAATCATTGGCCATGGAGATGAAGTCGTTCAACT
TAACAAAATGGATGTATGAAGATTCTCTTATCACATACACCATGCATTGC
AGTCCAGCAGGAGAGAAGAAACATTTTTCTGTCAAGATTTACCTTTTTCA
TCACTTCTGTCCTCTTCCCAGAATTATGTATTCATTGCTGGACAAAGACT
ACAACAATATCCCATGTCACGACCATGCTTTATCTACCCTGGGTaaaaaa
atcagaagaGATATAGAACATGCTATTCGAAGGCAAAGAGCTGAAGACAA
CACCGAACCGTACCCGCAAAAATGGGCAAAGCTCTTCCAACAGTAAATGG
AAGAATCCTCGAAAATGGCTACCAAGAATTCACTATCACTTTGCCAAAAG
TCATCAGAAGAAAAGAATGGCGGTGGTGATGGGGAAGTGAAATCATTGGC
CATGGAGATGAAGTCGTTCAACTTAACAAAATGGATGTATGAAGATTCTC
TTATCACATACACCATGCATTGCAGTCCAGCAGGAGAGAAGAAACATTTT
TCTGTCAAGATTTACCTTTTTCATCACTTCTGTCCTCTTCCCAGAATTAT
GTATTCATTGCTGGACAAAGACTACAACAATATCCCATGTCACGACCATG
CTTTATCTACCCTGGGTaaaaaaatcagaagaGATATAGAACATGCTATT
CGAAGGCAAAGAGCTGAAGACAACACCGAACCGTACCCGCAAAAATGGGC
AAAGCTCTTCCAACAGTAAATGGAAGAATCCTCGAAAATGGCTACCAAGA
ATTCACTATCACTTTGCCAAAAGTCATCAGAAGAAAAGAATGGCGGTGGT
GATGGGGAAGTGAAATCATTGGCCATGGAGATGAAGTCGTTCAACTTAAC
AAAATGGATGTATGAAGATTCTCTTATCACATACACCATGCATTGCAGTC
CAGCAGGAGAGAAGAAACATTTTTCTGTCAAGATTTACCTTTTTCATCAC
TTCTGTCCTCTTCCCAGAATTATGTATTCATTGCTGGACAAAGACTACAA
CAATATCCCATGTCACGACCATGCTTTATCTACCCTGGGTaaaaaaatca
gaagaGATATAGAACATGCTATTCGAAGGCAAAGAGCTGAAGACAACACC
GAACCGTACCCGCAAAAATGGGCAAAGCTCTTCCAACAGTAAATGGAAGA
ATCCTCGAAAATGGCTACCAAGAATTCACTATCACTTTGCCAAAAGTCAT
CAGAAGAAAAGAATGGCGGTGGTGATGGGGAAGTGAAATCATTGGCCATG
GAGATGAAGTCGTTCAACTTAACAAAATGGATGTATGAAGATTCTCTTAT
CACATACACCATGCATTGCAGTCCAGCAGGAGAGAAGAAACATTTTTCTG
TCAAGATTTACCTTTTTCATCACTTCTGTCCTCTTCCCAGAATTATGTAT
TCATTGCTGGACAAAGACTACAACAATATCCCATGTCACGACCATGCTTT
ATCTACCCTGGGTaaaaaaatcagaagaGATATAGAACATGCTATTCGAA
GGCAAAGAGCTGAAGACAACACCGAACCGTACCCGCAAAAATGGGCAAAG
CTCTTCCAACAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007727XLOC_007727Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013826-exon-sc0000174-1491911889:87862..88183TCONS_00013826-exon-sc0000174-1491911889:87862..88183Clytia hemisphaericaexon
TCONS_00013826-exon-sc0000174-1510915933:87862..88183TCONS_00013826-exon-sc0000174-1510915933:87862..88183Clytia hemisphaericaexon
TCONS_00013826-exon-sc0000174-1575043694:87862..88183TCONS_00013826-exon-sc0000174-1575043694:87862..88183Clytia hemisphaericaexon
TCONS_00013826-exon-sc0000174-1491911889:95565..95711TCONS_00013826-exon-sc0000174-1491911889:95565..95711Clytia hemisphaericaexon
TCONS_00013826-exon-sc0000174-1510915933:95565..95711TCONS_00013826-exon-sc0000174-1510915933:95565..95711Clytia hemisphaericaexon
TCONS_00013826-exon-sc0000174-1575043694:95565..95711TCONS_00013826-exon-sc0000174-1575043694:95565..95711Clytia hemisphaericaexon
TCONS_00013826-exon-sc0000174-1491911889:96144..96200TCONS_00013826-exon-sc0000174-1491911889:96144..96200Clytia hemisphaericaexon
TCONS_00013826-exon-sc0000174-1510915933:96144..96200TCONS_00013826-exon-sc0000174-1510915933:96144..96200Clytia hemisphaericaexon
TCONS_00013826-exon-sc0000174-1575043694:96144..96200TCONS_00013826-exon-sc0000174-1575043694:96144..96200Clytia hemisphaericaexon
TCONS_00013826-exon-sc0000174-1491911889:96848..96919TCONS_00013826-exon-sc0000174-1491911889:96848..96919Clytia hemisphaericaexon
TCONS_00013826-exon-sc0000174-1510915933:96848..96919TCONS_00013826-exon-sc0000174-1510915933:96848..96919Clytia hemisphaericaexon
TCONS_00013826-exon-sc0000174-1575043694:96848..96919TCONS_00013826-exon-sc0000174-1575043694:96848..96919Clytia hemisphaericaexon
TCONS_00013826-exon-sc0000174-1491911889:97084..97257TCONS_00013826-exon-sc0000174-1491911889:97084..97257Clytia hemisphaericaexon
TCONS_00013826-exon-sc0000174-1510915933:97084..97257TCONS_00013826-exon-sc0000174-1510915933:97084..97257Clytia hemisphaericaexon
TCONS_00013826-exon-sc0000174-1575043694:97084..97257TCONS_00013826-exon-sc0000174-1575043694:97084..97257Clytia hemisphaericaexon
TCONS_00013826-exon-sc0000174-1491911889:106360..106441TCONS_00013826-exon-sc0000174-1491911889:106360..106441Clytia hemisphaericaexon
TCONS_00013826-exon-sc0000174-1510915933:106360..106441TCONS_00013826-exon-sc0000174-1510915933:106360..106441Clytia hemisphaericaexon
TCONS_00013826-exon-sc0000174-1575043694:106360..106441TCONS_00013826-exon-sc0000174-1575043694:106360..106441Clytia hemisphaericaexon
TCONS_00013826-exon-sc0000174-1491911889:106758..106819TCONS_00013826-exon-sc0000174-1491911889:106758..106819Clytia hemisphaericaexon
TCONS_00013826-exon-sc0000174-1510915933:106758..106819TCONS_00013826-exon-sc0000174-1510915933:106758..106819Clytia hemisphaericaexon
TCONS_00013826-exon-sc0000174-1575043694:106758..106819TCONS_00013826-exon-sc0000174-1575043694:106758..106819Clytia hemisphaericaexon
TCONS_00013826-exon-sc0000174-1491911889:107023..107146TCONS_00013826-exon-sc0000174-1491911889:107023..107146Clytia hemisphaericaexon
TCONS_00013826-exon-sc0000174-1510915933:107023..107146TCONS_00013826-exon-sc0000174-1510915933:107023..107146Clytia hemisphaericaexon
TCONS_00013826-exon-sc0000174-1575043694:107023..107146TCONS_00013826-exon-sc0000174-1575043694:107023..107146Clytia hemisphaericaexon
TCONS_00013826-exon-sc0000174-1491911889:107742..108001TCONS_00013826-exon-sc0000174-1491911889:107742..108001Clytia hemisphaericaexon
TCONS_00013826-exon-sc0000174-1510915933:107742..108001TCONS_00013826-exon-sc0000174-1510915933:107742..108001Clytia hemisphaericaexon
TCONS_00013826-exon-sc0000174-1575043694:107742..108001TCONS_00013826-exon-sc0000174-1575043694:107742..108001Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013826-proteinTCONS_00013826-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000174supercontigsc0000174:87862..108001 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.99158	4.59433	1.56587	0.8363	9.92683	7.18102	12.1365	11.8014	11.8929	12.6769	14.397	10.5503	10.2192	9.33875	8.12058	9.61265	7.37886	10.5203	10.2628	9.73164	8.86964	8.5616	5.94482	7.21226	6.47881	9.77654	5.77208	4.96822	5.49865	5.92024
Blast
[Close]
BLAST of TCONS_00013826 vs. Swiss-Prot (Human)
Match: TM87B (Transmembrane protein 87B OS=Homo sapiens GN=TMEM87B PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.754e-17
Identity = 44/107 (41.12%), Postives = 65/107 (60.75%), Query Frame = 2 
Query:  785 RADMNG--LFVVGLMFKSTDEV-TIKARIDSVHKGSYLSAMIYKLLSFYGVMSLIYLAYAISWFIDTCCKYWKDLLRVQFWIGGVIALGMFENALFYSAYQSISHYG 1096
            R   +G  +F+V +  ++TD    +   +  +    Y+SA  + L+ FY VM ++Y+ Y I W   + C YWKD+LR+QFWI  VI LGM E A+FYS YQ+IS+ G
Sbjct:  172 RTQKDGFHIFIVSIKTENTDASWNLNVSLSMIGPHGYISASDWPLMIFYMVMCIVYILYGILWLTWSAC-YWKDILRIQFWIAAVIFLGMLEKAVFYSEYQNISNTG 277
The following BLAST results are available for this feature:
BLAST of TCONS_00013826 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TM87B1.754e-1741.12Transmembrane protein 87B OS=Homo sapiens GN=TMEM8... [more]
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