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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013859 ID=TCONS_00013859|Name=TCONS_00013859|organism=Clytia hemisphaerica|type=transcript|length=1122bp
CGAAATCGAGCCCAATTACGTCTTCAAATATGTTTCTTCAATTTTGgaag
atttttcttaaaaaataaaacatatttttgTGAATCATAAACTCACTTCA
GAGTAACTGATTAAGCAAAAGTAGAACAAGAGAGGTCTTTAGCAGATTTC
ATATTTAAAATATCAAGCAAAACAGTTGACTAAATCTGAGGTTATAAGTA
GAAAATGGAATTTTTCAAGGATTCAATTTCTATCTGTCTGATCGTGATGT
GTTTAGTTACAATTTCATTTTCGAagAGTATTATTCAAGAGGATGATGAG
CTGGTCAAAAGAAACGATATTATCAACAGtcatgaagatgaagaagtatC
AAAGACATTGGATCGGCGATCAATATGCGATTTATCGATCTCAGCCTGTA
TCCCAGGTGTCGTGTCATCGTGCGTAACGAACGATCAATGTCGTGTTTGT
TGTGGGAGTGTTGAATATGTCTGTCTCTTGGGAATCTGTTTTGAAGACCG
CGGTGTGATATCTATCGCGTCTGCTGGTAGTAAACTTATTGGATAGTGGA
TCTCAACACCTAATATTATACAAAGCGTTCAAAAAGAATTAGGGAGTTgt
tttttaaatcatgtttcCATTACCATGCGAATAATGTATAGattaaacaa
agaaatattatttGATTCCTATTGTTATAACTCCAGTGACAGAAGATATA
TGAACCTATTGCCTACATAAAATCGGTTCCCTTTTTTTCCGCACTACACT
GTATACTATACCGTGTGTTTAGTATCTATATACCTTAAgcggataaattt
tggcggagattaaatttggcaaatttgacGAATTTGGTCaaaaatcgcca
aattaaatccctgcaCAAATTTAacgaattttttaaagaaaacttaaagg
aaaaaattttggtgggaatttaatttggaggATACTAGCtgtataaatta
aatttgacgggaatctaatttggcggttgcaggatattttgggccaaaag
cgttattaaataagcaaaaaaacctgttttaaggcttgaaatagtacgaa
tttggggaatgcgtgaaatgaattaaatttggtgggaatttaatttggcg
gatggaggaaaaaattaatttt Run BLAST on NCBI protein sequence of TCONS_00013859-protein >TCONS_00013859-protein ID=TCONS_00013859-protein|Name=TCONS_00013859-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
MEFFKDSISICLIVMCLVTISFSKSIIQEDDELVKRNDIINSHEDEEVSK
TLDRRSICDLSISACIPGVVSSCVTNDQCRVCCGSVEYVCLLGICFEDRG
VISIASAGSKLIG Run BLAST on NCBI transcript from alignment at sc0000174:587280..588937+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013859 ID=TCONS_00013859|Name=TCONS_00013859|organism=Clytia hemisphaerica|type=transcript|length=1658bp|location=Sequence derived from alignment at sc0000174:587280..588937+ (Clytia hemisphaerica)
CGAAATCGAGCCCAATTACGTCTTCAAATATGTTTCTTCAATTTTGgaag
atttttcttaaaaaataaaacatatttttgTGAATCATAAACTCACTTCA
GAGTAACTGATTAAGCAAAAGTAGAACAAGAGAGGTCTTTAGCAGATTTC
ATATTTAAAATATCAAGCAAAACAGTTGACTAAATCTGAGGTTATAAGTA
GAAAATGGAATTTTTCAAGGATTCAATTTCTATCTGTCTGATCGTGATGT
GTTTAGTTACAATTTCATTTTCGAaggtaatttttctttcttttttctaa
gtttCATTTAGAGCTTTTCCAGCCTTGATCAAGGTTTCGGGTCTTTTTAA
AGATAATATACAAaaacgaggggtaaatcactaaaaattaggtgtacgag
attttcatttctttttgatttttgatttctttttgatttctttttgattt
ctttttgatttttgatttctttttgatttctttttgatttttgatttctt
tttgatttcttttttatttttgatttctttttgatttctttttgattttt
caaaaaggtgtacgtgatttttttcagtgatttacccctcgtacAAAAAG
ACATTATTGCCAAGTTTGATCACCCATAGATGTTGCATTTAATAAAAGAT
ACATTCTTAAATAAGTTCATTTATTTAAAGCGGGGGTCTGTTTAAAGCCC
TGTTTTAAGGGTAGCAAAAAATGGTCATAGCCAAAGTGAACGAACTTTTA
AATTTATAATATGAAGACTTAAAGATGCtactttttttacaatttgCTAT
ACAATTTTAAAGAGTATTATTCAAGAGGATGATGAGCTGGTCAAAAGAAA
CGATATTATCAACAGtcatgaagatgaagaagtatCAAAGACATTGGATC
GGCGATCAATATGCGATTTATCGATCTCAGCCTGTATCCCAGGTGTCGTG
TCATCGTGCGTAACGAACGATCAATGTCGTGTTTGTTGTGGGAGTGTTGA
ATATGTCTGTCTCTTGGGAATCTGTTTTGAAGACCGCGGTGTGATATCTA
TCGCGTCTGCTGGTAGTAAACTTATTGGATAGTGGATCTCAACACCTAAT
ATTATACAAAGCGTTCAAAAAGAATTAGGGAGTTgttttttaaatcatgt
ttcCATTACCATGCGAATAATGTATAGattaaacaaagaaatattatttG
ATTCCTATTGTTATAACTCCAGTGACAGAAGATATATGAACCTATTGCCT
ACATAAAATCGGTTCCCTTTTTTTCCGCACTACACTGTATACTATACCGT
GTGTTTAGTATCTATATACCTTAAgcggataaattttggcggagattaaa
tttggcaaatttgacGAATTTGGTCaaaaatcgccaaattaaatccctgc
aCAAATTTAacgaattttttaaagaaaacttaaaggaaaaaattttggtg
ggaatttaatttggaggATACTAGCtgtataaattaaatttgacgggaat
ctaatttggcggttgcaggatattttgggccaaaagcgttattaaataag
caaaaaaacctgttttaaggcttgaaatagtacgaatttggggaatgcgt
gaaatgaattaaatttggtgggaatttaatttggcggatggaggaaaaaa
ttaatttt Coding sequence (CDS) from alignment at sc0000174:587280..588937+ >TCONS_00013859 ID=TCONS_00013859|Name=TCONS_00013859|organism=Clytia hemisphaerica|type=CDS|length=684bp|location=Sequence derived from alignment at sc0000174:587280..588937+ (Clytia hemisphaerica)
ATGGAATTTTTCAAGGATTCAATTTCTATCTGTCTGATCGTGATGTGTTT
AGTTACAATTTCATTTTCGAagAGTATTATTCAAGAGGATGATGAGCTGG
TCAAAAGAAACGATATTATCAACAGtcatgaagatgaagaagtatCAAAG
ACATTGGATCGGCGATCAATATGCGATTTATCGATCTCAGCCTGTATCCC
AGGTGTCGTGTCATCGTGCGTAACGAACGATCAATGTCGTGTTTGTTGTG
GGAGTGTTGAATATGTCTGTCTCTTGGGAATCTGTTTTGAAGACCGCGGT
GTGATATCTATCGCGTCTGCTGGTAGTAAACTTATTGGATAGATGGAATT
TTTCAAGGATTCAATTTCTATCTGTCTGATCGTGATGTGTTTAGTTACAA
TTTCATTTTCGAagAGTATTATTCAAGAGGATGATGAGCTGGTCAAAAGA
AACGATATTATCAACAGtcatgaagatgaagaagtatCAAAGACATTGGA
TCGGCGATCAATATGCGATTTATCGATCTCAGCCTGTATCCCAGGTGTCG
TGTCATCGTGCGTAACGAACGATCAATGTCGTGTTTGTTGTGGGAGTGTT
GAATATGTCTGTCTCTTGGGAATCTGTTTTGAAGACCGCGGTGTGATATC
TATCGCGTCTGCTGGTAGTAAACTTATTGGATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013859-exon-sc0000174-1491911889:587280..587555 | TCONS_00013859-exon-sc0000174-1491911889:587280..587555 | Clytia hemisphaerica | exon |
| TCONS_00013859-exon-sc0000174-1510915933:587280..587555 | TCONS_00013859-exon-sc0000174-1510915933:587280..587555 | Clytia hemisphaerica | exon |
| TCONS_00013859-exon-sc0000174-1575043694:587280..587555 | TCONS_00013859-exon-sc0000174-1575043694:587280..587555 | Clytia hemisphaerica | exon |
| TCONS_00013859-exon-sc0000174-1491911889:588092..588937 | TCONS_00013859-exon-sc0000174-1491911889:588092..588937 | Clytia hemisphaerica | exon |
| TCONS_00013859-exon-sc0000174-1510915933:588092..588937 | TCONS_00013859-exon-sc0000174-1510915933:588092..588937 | Clytia hemisphaerica | exon |
| TCONS_00013859-exon-sc0000174-1575043694:588092..588937 | TCONS_00013859-exon-sc0000174-1575043694:588092..588937 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000174 | supercontig | sc0000174:587280..588937 + |
Blast
The following BLAST results are available for this feature:
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