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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013938 ID=TCONS_00013938|Name=TCONS_00013938|organism=Clytia hemisphaerica|type=transcript|length=2075bp
CGATAACTTGATGAGAAAATCAAAGGTCAAAAgacaacaaaaatattctt
gattTCAACTAGATTGTAACGTTTTGGTAAACCAATAAGCACAGATTTTG
AACTGCTTGGATTGCTTCAAACAAAAATAGTGACATAATTGCATGACGAA
ATCCGGGTCAAATAGAAACAATATTTTGATTCCTCAATATGAATCTGTTT
GTTGACTGGCTATTGAATTTATCAACTAATTGGATGCCGAGTTCGTCTTC
AACTTCAACCGAGTGGTTATTGAGTCTGTTATCGCCCGTTCTAGCTTTAA
TTTTGGTTAACTACAAGCGAGAAACATTTGCAGGGATTTTTAACCGACTT
ATACAGCGTTGCCATGCCTACATAAGCGATGGAATGCGTGAGGTTTATAA
CAAGTCGGTCATCAAAAGAAAAGAGGATTTATTCCAAACGATGGCTAAAG
atcagatatttcaaaaagGCAAAAAGATCTTAGAGATTGGATCTGGAAGT
GGGGCTAACCTCGAATTTTTTCCCAAAGATGCTAACATTAGCCTGGTGGC
GTTAGATTCGAATGAATATTGTCGACCGTACTTGGAAAAGCGGCTTGAGT
CATTCCCCAACGTTAGGCTGGATTCCTACTTAATAGCTAGTGCTGAAGAT
ATGTCTAGAATTGAGTCTAACTCAATTGATTGCGTCTTATCGACTATAGT
ATTATGTTCTGTTAAGAACCAAAAAAACGTTCTACGAGAAATCAAACGCG
TTTTGAAACCCGGCTGCCGGTTCTATTTCATGGAGAACGTGATTGCTAAT
AATGGTAGCATCATGTCTCGATTTCAAAATGCCTTAAACCCCGTTAATAA
AGTGATATTAGATGGCTGTAACGTTAATCGTGAAACCCTTCCAGAAATAA
AGAACGCAGGCTTTTCGAAAGTTCATTATGAAAGATTCGAGGCTAATCTT
GAATACGTATGTGCTATGTTTCGACCACATATCACTGGATACGCTGAGAA
ATGAGATACATTTTTTAAGGAAAGCGATCATGTCGAACTAGGTTCAGGTT
ACCACAAAACGTTGAAACTACGATGTGCTAGCTTAGGCTAAGATCCTATA
GAAGCAGATATTCAGTGATGGTCTCGTAGCTGAACTGAATGATTAGGGTC
TGGATTGGACAGGACAACTTTTTATTGTAATATAAGCACCAACTGAATGC
CAATACAGATGTAACGAAGACGCCATCAAGGGGCTGTAGATGGTAGAACT
CTTTTAAGTACTTAAGGCTGGTCTCCaattgcgcgcgctgcgatcgcacc
ttttggcttcaatcctttttgcttcaaaaaaaaattacgccATAAAAATA
GAGCTTgcgctcaaaaaaaaatttgaatcaacGTTGCGTCAGATCGCGCA
Aacggaattgcttcatttttcttttgaccaatagcgtggaagctttgctc
gaaaaagtgcgatctaagcgcgcgcaagtggagaccgggcTTTAAATCAA
ATATTTCTCGGAGATGTCTTACCATGGGATAAAAACAAACGTTTATCTGG
TTTATTGAAGTAGGACTGTGTATGAAATGTTCTTTATGGAATTAAACTAT
CCAacattttcgaagccttcggatgttctgaAATTTATGTATAATGTTTT
TTGGATGTACATTTTTGATATATAACATATATAACTTTTCGCAGTGGGTC
CATTTTGCCcataatttatcaatttatttaGTCCCttatcttttttatct
ttttcgaACATCCATCTCTCATAGACCCACTGGCACTTCTTCTCACTGGa
aagattggccaaaatatcgtccccagtggaagattatcatccaatttttg
tccccgtttaaaataatcaaataaaccaatcttcaCTTCAAAACATTCAC
TATTTTCCCACCCCCATTGAATTttgtgacttgaaaacaaaggaattgaa
aTCCCCGTCCATaggaaatatgggaatatcaatccccattgactttcagt
ccgttatttttatccccattgtctcaaaaatcctaccgggtctatgagaa
ggggttTTTTAGGTATACATTGGAG Run BLAST on NCBI protein sequence of TCONS_00013938-protein >TCONS_00013938-protein ID=TCONS_00013938-protein|Name=TCONS_00013938-protein|organism=Clytia hemisphaerica|type=polypeptide|length=271bp
MNLFVDWLLNLSTNWMPSSSSTSTEWLLSLLSPVLALILVNYKRETFAGI
FNRLIQRCHAYISDGMREVYNKSVIKRKEDLFQTMAKDQIFQKGKKILEI
GSGSGANLEFFPKDANISLVALDSNEYCRPYLEKRLESFPNVRLDSYLIA
SAEDMSRIESNSIDCVLSTIVLCSVKNQKNVLREIKRVLKPGCRFYFMEN
VIANNGSIMSRFQNALNPVNKVILDGCNVNRETLPEIKNAGFSKVHYERF
EANLEYVCAMFRPHITGYAEK Run BLAST on NCBI transcript from alignment at sc0000174:389631..391705 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013938 ID=TCONS_00013938|Name=TCONS_00013938|organism=Clytia hemisphaerica|type=transcript|length=2075bp|location=Sequence derived from alignment at sc0000174:389631..391705 (Clytia hemisphaerica)
CTCCAATGTATACCTAAAAaaccccttctcatagacccggtaggattttt
gagacaatggggataaaaataacggactgaaagtcaatggggattgatat
tcccatatttcctATGGACGGGGAtttcaattcctttgttttcaagtcac
aaAATTCAATGGGGGTGGGAAAATAGTGAATGTTTTGAAGtgaagattgg
tttatttgattattttaaacggggacaaaaattggatgataatcttccac
tggggacgatattttggccaatctttCCAGTGAGAAGAAGTGCCAGTGGG
TCTATGAGAGATGGATGTtcgaaaaagataaaaaagataaGGGACtaaat
aaattgataaattatgGGCAAAATGGACCCACTGCGAAAAGTTATATATG
TTATATATCAAAAATGTACATCCAAAAAACATTATACATAAATTtcagaa
catccgaaggcttcgaaaatgtTGGATAGTTTAATTCCATAAAGAACATT
TCATACACAGTCCTACTTCAATAAACCAGATAAACGTTTGTTTTTATCCC
ATGGTAAGACATCTCCGAGAAATATTTGATTTAAAgcccggtctccactt
gcgcgcgcttagatcgcactttttcgagcaaagcttccacgctattggtc
aaaagaaaaatgaagcaattccgtTTGCGCGATCTGACGCAACgttgatt
caaatttttttttgagcgcAAGCTCTATTTTTATggcgtaattttttttt
gaagcaaaaaggattgaagccaaaaggtgcgatcgcagcgcgcgcaattG
GAGACCAGCCTTAAGTACTTAAAAGAGTTCTACCATCTACAGCCCCTTGA
TGGCGTCTTCGTTACATCTGTATTGGCATTCAGTTGGTGCTTATATTACA
ATAAAAAGTTGTCCTGTCCAATCCAGACCCTAATCATTCAGTTCAGCTAC
GAGACCATCACTGAATATCTGCTTCTATAGGATCTTAGCCTAAGCTAGCA
CATCGTAGTTTCAACGTTTTGTGGTAACCTGAACCTAGTTCGACATGATC
GCTTTCCTTAAAAAATGTATCTCATTTCTCAGCGTATCCAGTGATATGTG
GTCGAAACATAGCACATACGTATTCAAGATTAGCCTCGAATCTTTCATAA
TGAACTTTCGAAAAGCCTGCGTTCTTTATTTCTGGAAGGGTTTCACGATT
AACGTTACAGCCATCTAATATCACTTTATTAACGGGGTTTAAGGCATTTT
GAAATCGAGACATGATGCTACCATTATTAGCAATCACGTTCTCCATGAAA
TAGAACCGGCAGCCGGGTTTCAAAACGCGTTTGATTTCTCGTAGAACGTT
TTTTTGGTTCTTAACAGAACATAATACTATAGTCGATAAGACGCAATCAA
TTGAGTTAGACTCAATTCTAGACATATCTTCAGCACTAGCTATTAAGTAG
GAATCCAGCCTAACGTTGGGGAATGACTCAAGCCGCTTTTCCAAGTACGG
TCGACAATATTCATTCGAATCTAACGCCACCAGGCTAATGTTAGCATCTT
TGGGAAAAAATTCGAGGTTAGCCCCACTTCCAGATCCAATCTCTAAGATC
TTTTTGCctttttgaaatatctgatCTTTAGCCATCGTTTGGAATAAATC
CTCTTTTCTTTTGATGACCGACTTGTTATAAACCTCACGCATTCCATCGC
TTATGTAGGCATGGCAACGCTGTATAAGTCGGTTAAAAATCCCTGCAAAT
GTTTCTCGCTTGTAGTTAACCAAAATTAAAGCTAGAACGGGCGATAACAG
ACTCAATAACCACTCGGTTGAAGTTGAAGACGAACTCGGCATCCAATTAG
TTGATAAATTCAATAGCCAGTCAACAAACAGATTCATATTGAGGAATCAA
AATATTGTTTCTATTTGACCCGGATTTCGTCATGCAATTATGTCACTATT
TTTGTTTGAAGCAATCCAAGCAGTTCAAAATCTGTGCTTATTGGTTTACC
AAAACGTTACAATCTAGTTGAaatcaagaatatttttgttgtcTTTTGAC
CTTTGATTTTCTCATCAAGTTATCG Coding sequence (CDS) from alignment at sc0000174:389631..391705 >TCONS_00013938 ID=TCONS_00013938|Name=TCONS_00013938|organism=Clytia hemisphaerica|type=CDS|length=816bp|location=Sequence derived from alignment at sc0000174:389631..391705 (Clytia hemisphaerica)
TCATTTCTCAGCGTATCCAGTGATATGTGGTCGAAACATAGCACATACGT
ATTCAAGATTAGCCTCGAATCTTTCATAATGAACTTTCGAAAAGCCTGCG
TTCTTTATTTCTGGAAGGGTTTCACGATTAACGTTACAGCCATCTAATAT
CACTTTATTAACGGGGTTTAAGGCATTTTGAAATCGAGACATGATGCTAC
CATTATTAGCAATCACGTTCTCCATGAAATAGAACCGGCAGCCGGGTTTC
AAAACGCGTTTGATTTCTCGTAGAACGTTTTTTTGGTTCTTAACAGAACA
TAATACTATAGTCGATAAGACGCAATCAATTGAGTTAGACTCAATTCTAG
ACATATCTTCAGCACTAGCTATTAAGTAGGAATCCAGCCTAACGTTGGGG
AATGACTCAAGCCGCTTTTCCAAGTACGGTCGACAATATTCATTCGAATC
TAACGCCACCAGGCTAATGTTAGCATCTTTGGGAAAAAATTCGAGGTTAG
CCCCACTTCCAGATCCAATCTCTAAGATCTTTTTGCctttttgaaatatc
tgatCTTTAGCCATCGTTTGGAATAAATCCTCTTTTCTTTTGATGACCGA
CTTGTTATAAACCTCACGCATTCCATCGCTTATGTAGGCATGGCAACGCT
GTATAAGTCGGTTAAAAATCCCTGCAAATGTTTCTCGCTTGTAGTTAACC
AAAATTAAAGCTAGAACGGGCGATAACAGACTCAATAACCACTCGGTTGA
AGTTGAAGACGAACTCGGCATCCAATTAGTTGATAAATTCAATAGCCAGT
CAACAAACAGATTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013938-exon-sc0000174-1491911889:389631..391705 | TCONS_00013938-exon-sc0000174-1491911889:389631..391705 | Clytia hemisphaerica | exon |
| TCONS_00013938-exon-sc0000174-1510915933:389631..391705 | TCONS_00013938-exon-sc0000174-1510915933:389631..391705 | Clytia hemisphaerica | exon |
| TCONS_00013938-exon-sc0000174-1575043694:389631..391705 | TCONS_00013938-exon-sc0000174-1575043694:389631..391705 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000174 | supercontig | sc0000174:389631..391705 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013216 | Methyltransf_11 |
| IPR029063 | SAM-dependent_MTases |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0008152 | metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008168 | methyltransferase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0008152 |
metabolic process |
| molecular_function |
GO:0008168 |
methyltransferase activity |
Blast
BLAST of TCONS_00013938 vs. Swiss-Prot (Human)
Match: MET7A (Methyltransferase-like protein 7A OS=Homo sapiens GN=METTL7A PE=1 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 2.583e-41 Identity = 74/225 (32.89%), Postives = 130/225 (57.78%), Query Frame = 3
Query: 327 FAGIFNRLIQRCHAYISDGMREVYNKSVIKRKEDLFQTMAKDQIFQKGKKILEIGSGSGANLEFFPKDANISLVALDSNEYCRPYLEKRLESFPNVRLDSYLIASAEDMSRIESNSIDCVLSTIVLCSVKNQKNVLREIKRVLKPGCRFYFMENVIANNGSIMSRFQNALNPVNKVILDGCNVNRETLPEIKNAGFSKVHYERFEANLEYVCAMFRPHITGYAEK 1001
F G+++ + ++ Y +YN+ + +K +LF + + +LE+G G+GAN +F+P ++ +D N +L K + +++ + +++A+ E+M ++ S+D V+ T+VLCSVKNQ+ +LRE+ RVL+PG FYFME+V A + +Q L+P ++ DGCN+ RE+ ++ A FSK+ + +A L + + RPHI GYA K
Sbjct: 24 FLGLWSWICKKWFPYFLVRFTVIYNEQMASKKRELFSNLQEFAGPSGKLSLLEVGCGTGANFKFYPPGCRVT--CIDPNPNFEKFLIKSIAENRHLQFERFVVAAGENMHQVADGSVDVVVCTLVLCSVKNQERILREVCRVLRPGGAFYFMEHVAAECSTWNYFWQQVLDPAWHLLFDGCNLTRESWKALERASFSKLKLQHIQAPLSW--ELVRPHIYGYAVK 244
The following BLAST results are available for this feature:
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