|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013954 ID=TCONS_00013954|Name=TCONS_00013954|organism=Clytia hemisphaerica|type=transcript|length=1815bp
TCTATCGGATTTGGGTGAAAAAGGCGAACACTTGTTTTTCGAAAAACTCT
ATTCCCTCAAAGACGACCCTGTTCTTCAAGATACTGTGATTCTCAGTTCC
ATCAATTTCCTCACTAATGTCCAAAAGAAAATGCATCAGGAGATTGACGT
CCTTCTTTTCTCATGGACCAAGAAACTAATCATAGGCGTTGAAATCAAAC
GGACACTAACTATAAAAGCTTTTGACCAGTTGAATAGATACCATAAATTG
ATAGAAGAGAGGTTGAGTGATCAATTGGGACAAAGCTGGATGTACCATCC
AGTCATTCTGGTTGAAAAGGACGACCTTTCTTTTAACAATCAACATTACA
TTGACCAAGAAACAGATTTGAAATGTTGGTTATCCCCCTTGCTTGCAAAA
TACCCGTCCGTTCCCTCTGGAATACCTTTCATCCCAGCAGTAAATCAAGT
TAAAGACCTCCTGAGAATCGTTGTGTTTGCAATTCATGCTTCAAAAACAG
CACCCATTACGACGTCGAACTGGGTGGAGTATATCTCACAAGCCATCGAT
ACCGTCTGCACCACTGACAACATACTCTTTTACAGTCAGCGTCAACTTCC
CATCATGAAGACAGACACTTCTGAATTCAATAAGATCCTCTTTTATGCGC
CTTACGGATGCGGCAAATCGTTCATCCTTcaagaaaaagcaaaacaattg
AGTGGAATAAAGAAGTACAAAGGACGTGTTATGTATGGCATTGAGAGGAG
TGATGATCTAGAAACCCTTCTTGAGTGGAGATTGAAAAACGAATTGGGAA
AAGAACATGGAGTCGACGTTTATGGATACAGAGTCTTCCATCTCGATGAA
GAGAAAATAAAAGAGCAAATGGAAAAGCTAATGGAGAGGATTCAAACAAG
ACACATCAACGCATTATTCATCGATGAGTGTGAGGTTACCTATAATCAAT
GGAAAGAAATTATAATGAAAGTCAAACAACACGTTGAGGTGATTTGGATT
GCATCAAACGGATTGGGTCATCAGCGTATTTTATCAGGTGATGAAGATCT
TTCGCTGTATGACGATTTCATAAAATATGAACTTGACGTGAATTTAAGAA
ACTGTCAAAGTATAGTAAAAGAGGCATTAagctttgaagaaaaaacaact
TTGTACTATATAGAAGGTTTAGTATTTCCACCACCGAATCACCCTAATGG
AAAGCAACCGTACCATTCCAAATCATTTGAAGATGCCATCACAGAAATGA
GAAAGATCACGAACGATGGAGTGCTAGTGATATCTGATATTCCATACGAG
AAGGATGATCTTCAAACATTGGACAAGATGAAATTGAAATGGAAAAGGTA
TGGAGAAGATAAAAACGATTTCAATGAAGGTGAAAGTCCATATCAATTTC
TCGTAGACGGAAACATTTTATTGATTGACAATGAACTTATTTCCGGCTTC
GAGTGGAGTAACATCATCCTCATCATCTTTAAAGGAGAAACAGGAATTAT
TGATGACCATCCATGTAATTCCATCATGAGATGCACCACGAATCTCATGA
TTGTCATGATTGTTGAcggagaaaaattttcttcagatGAAACCGATAGT
GACATTTCTTCTGATGAAACCAATACTGAAGATTCTTCCGAtgattaaat
ttaaaagattAAGACTACTACAGTAtaattaaatataatttttgaaatta
gttAGTACATAGAATTTTCGAGATaatcttttcagtttttgttacatttt
atcattttaaggtaacaaatattttctttgacaaCTAAAATGGAGTCAcg
aattgtgtatttttt Run BLAST on NCBI transcript from alignment at sc0000175:74050..76380+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013954 ID=TCONS_00013954|Name=TCONS_00013954|organism=Clytia hemisphaerica|type=transcript|length=2331bp|location=Sequence derived from alignment at sc0000175:74050..76380+ (Clytia hemisphaerica)
TCTATCGGATTTGGGTGAAAAAGGCGAACACTTGTTTTTCGAAAAACTCT
ATTCCCTCAAAGACGACCCTGTTCTTCAAGATACTGTGATTCTCAGTTCC
ATCAATTTCCTCACTAATGTCCAAAAGAAAATGCATCAGGAGATTGACGT
CCTTCTTTTCTCATGGACCAAGAAACTAATCATAGGCGTTGAAATCAAAC
GGACACTAACTATAAAAGCTTTTGACCAGTTGAATAGATACCATAAATTG
ATAGAAGAGAGGTTGAGTGATCAATTGGGACAAAGCTGGATGTACCATCC
AGTCATTCTGGTTGAAAAGGACGACCTTTCTTTTAACAATCAACATTACA
TTGACCAAGAAACAGATTTGAAATGTTGGTTATCCCCCTTGCTTGCAAAA
TACCCGTCCGTTCCCTCTGGAATACCTTTCATCCCAGCAGTAAATCAAGT
TAAAGACCTCCTGAGAATCGTTGTGTTTGCAATTCATGCTTCAAAAACAG
CACCCATTACGACGTCGAACTGGGTGGAGTATATCTCACAAGCCATCGAT
ACCGTCTGCACCACTGACAACATACTCTTTTACAGTCAGCGTCAACTTCC
CATCATGAAGACAGACACTTCTGAATTCAATAAGATCCTCTTTTATGCGC
CTTACGGATGCGGCAAATCGTTCATCCTTcaagaaaaagcaaaacaattg
AGTGGAATAAAGAAGTACAAAGGACGTGTTATGTATGGCATTGAGAGGAG
TGATGATCTAGAAACCCTTCTTGAGTGGAGATTGAAAAACGAATTGGGAA
AAGAACATGGAGTCGACGTTTATGGATACAGAGTCTTCCATGTAAGTTGC
ATTTTGAATCTAAGTTGaatcattttctaattttaattGAACAAAAACGG
CTTTGATTGAATGATCGCCTGCAAATTATGTTAAAATATATTGTTTTATT
GATTACAAACGATATCGTAGAATAACTGAtaagaaaaagtaaaagtaaaa
gaaaattgagaCAGTTTAAGGACTACAACCTATAAGTTATAAACACCGAT
TTATGATTTGCTTATTGTGTCATTTTCATTCGAAAAAAACGCTCAAATCT
GCTAGAGTGAGAAAACTTTTGCTGTTTTTGTATGAGAGACTGACTACGTA
aacattttgaattaaaaaaatgaaactaaTATTGCACTGATCTACACTTA
ATACTGTAAATGTTTTAAGCTTACCGGTATTATTGAAGAAAAGTTAGAAA
CAATAgttcaattaaaattttatcgTGCATTTTTCCGTAATAGATTTTTA
TGATCCTTTGTATGCAAATGAAGagatttacttgaaataatattttcttt
cgAACAGCTCGATGAAGAGAAAATAAAAGAGCAAATGGAAAAGCTAATGG
AGAGGATTCAAACAAGACACATCAACGCATTATTCATCGATGAGTGTGAG
GTTACCTATAATCAATGGAAAGAAATTATAATGAAAGTCAAACAACACGT
TGAGGTGATTTGGATTGCATCAAACGGATTGGGTCATCAGCGTATTTTAT
CAGGTGATGAAGATCTTTCGCTGTATGACGATTTCATAAAATATGAACTT
GACGTGAATTTAAGAAACTGTCAAAGTATAGTAAAAGAGGCATTAagctt
tgaagaaaaaacaactTTGTACTATATAGAAGGTTTAGTATTTCCACCAC
CGAATCACCCTAATGGAAAGCAACCGTACCATTCCAAATCATTTGAAGAT
GCCATCACAGAAATGAGAAAGATCACGAACGATGGAGTGCTAGTGATATC
TGATATTCCATACGAGAAGGATGATCTTCAAACATTGGACAAGATGAAAT
TGAAATGGAAAAGGTATGGAGAAGATAAAAACGATTTCAATGAAGGTGAA
AGTCCATATCAATTTCTCGTAGACGGAAACATTTTATTGATTGACAATGA
ACTTATTTCCGGCTTCGAGTGGAGTAACATCATCCTCATCATCTTTAAAG
GAGAAACAGGAATTATTGATGACCATCCATGTAATTCCATCATGAGATGC
ACCACGAATCTCATGATTGTCATGATTGTTGAcggagaaaaattttcttc
agatGAAACCGATAGTGACATTTCTTCTGATGAAACCAATACTGAAGATT
CTTCCGAtgattaaatttaaaagattAAGACTACTACAGTAtaattaaat
ataatttttgaaattagttAGTACATAGAATTTTCGAGATaatcttttca
gtttttgttacattttatcattttaaggtaacaaatattttctttgacaa
CTAAAATGGAGTCAcgaattgtgtatttttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013954-exon-sc0000175-1491911889:74050..74890 | TCONS_00013954-exon-sc0000175-1491911889:74050..74890 | Clytia hemisphaerica | exon |
| TCONS_00013954-exon-sc0000175-1510915933:74050..74890 | TCONS_00013954-exon-sc0000175-1510915933:74050..74890 | Clytia hemisphaerica | exon |
| TCONS_00013954-exon-sc0000175-1575043694:74050..74890 | TCONS_00013954-exon-sc0000175-1575043694:74050..74890 | Clytia hemisphaerica | exon |
| TCONS_00013954-exon-sc0000175-1491911889:75407..76380 | TCONS_00013954-exon-sc0000175-1491911889:75407..76380 | Clytia hemisphaerica | exon |
| TCONS_00013954-exon-sc0000175-1510915933:75407..76380 | TCONS_00013954-exon-sc0000175-1510915933:75407..76380 | Clytia hemisphaerica | exon |
| TCONS_00013954-exon-sc0000175-1575043694:75407..76380 | TCONS_00013954-exon-sc0000175-1575043694:75407..76380 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000175 | supercontig | sc0000175:74050..76380 + |
Blast
The following BLAST results are available for this feature:
|
