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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013965 ID=TCONS_00013965|Name=TCONS_00013965|organism=Clytia hemisphaerica|type=transcript|length=1461bp
AcagagaagaagaaaaagaagaaacaaaattcATACATGATGTGGTTATT
ACGTTGCAGCCTTTTGGCATGGCTTGTTGTATTTTTTATCGAAGTGCGTT
TGACCAATGCAAACGATGACGCAGTTGACCATTATATACATAtcaaaaat
tttgatcacattacAAACCGAAAGATTGGTAATACAAGAAAAATATTCCC
TTATCATCATGATCACCCACATGGAGACAAGGTTCACGAACATGAAAACG
AGGTTCACACGAAACCTGGTCACCATGATGACGACAAGAAAACGCGGCCA
CAGTTTGTCGGCCCAAAGCATTTGAGAAGAAAGACCAATCAACATGGGCG
TAAAGGATTACGTCACGGACGTCATGGGCGAAAAGGATTACGTAATGCAG
GCGAAGGATTACGACACGGGCGTAAAGGATTACGTCACGGGCGTCATGGG
CGAAAAGGATTACGTAATGAAGGCGAAGGATTACGACACGAACGAAAAAG
ATTACACAGATTACATCAAGTTGGTACAGAACATCACAACCAAAACAGGA
CAGGGCGCCATGGCAGAAGAGGAGGGCGTAAAGGTAAACGCCCCAACCAA
AACGGACGTCGCCAAGGACAAGAAGGGAAGCACGGACGTAGAGGTGGAAA
CAATAAAAGACAAGGAGGAAAGAATGTTTTTACAACGGTATTGGGCAAAA
AACTGAAGAGACATGCGTTGAAGTTGTTACAGAAAAGAGCGCTCTCTTCC
CAAATTGAGCCTGAGGTCGTGCCTGATCAAACAGCACCATGAAAGAGGGG
ACAGTTCGagtcaatgaagtataagcccgaagggctagaattgaatcttt
aacctttctcaattaagaaaaagtgaagccttaaaatatgcgccgtattt
ttgacgacgaaTTGAATCTAGCAACTCaacaattatttttgaaatttagc
cgTTAAATTTAGTTCCAAtccgtcatttgtgtaaaatccAGGcgggccgc
tcaaggccgcgcaactttggtaggattttgttggcttcaaatcctaccaa
ggagattcgattctagcccttcgggcttatacttcattgggacAGTTCGA
GTGCTCTCATTGTCTACCGTTGGGATTTAAATCTCGTAAAACTTTCTCAT
AAAAAGAAGAAGATGCTCGTAAAATAGACAAATAACAACATTAATTTCAT
ATTATGTTTTGTTACGGATTAATAAAAGAATAATCATAAAATCACTCTTT
ATTATAGCTTTTTATCCCTGTCTCCCTCTTATACCACCGTTGAAGTTACG
GCCTACAGATTATACACTGAAGACGGCTTTTTATAAATAAGCTGGATCAT
TTGGCGCTAAAAACTACGTCGAGTTTTTCTATTTGTAgtaaatgggctgt
tccattaaatttccatacaggcgggtggacgaaccttttaaagtcaaaaa
aagattctaga Run BLAST on NCBI transcript from alignment at sc0000175:399943..402927+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013965 ID=TCONS_00013965|Name=TCONS_00013965|organism=Clytia hemisphaerica|type=transcript|length=2985bp|location=Sequence derived from alignment at sc0000175:399943..402927+ (Clytia hemisphaerica)
AcagagaagaagaaaaagaagaaacaaaattcATACATGATGTGGTTATT
ACGTTGCAGCCTTTTGGCATGGCTTGTTGTATTTTTTATCGAAGTGCGTT
TGACCAATGCAAACGATGACGCAGTTGACCATTATATACATAGTAAGtta
acaaaaatattaagaTACTTTTCTAACTGGAATAatcggccaaaatatcg
tcagtggaaaattacactccaatttttgtccccaccgaaaataatcaaat
aaaccatcactgcaaaatattatgctattttcccatcctcactgaatttt
ctggcttgaattgaaaacaaaagaatgtaaATCCCAAGCcagaaaaaata
tggaaatattaatccccatcgagttttcaGTCCTTAATTTTTATCTCCAc
tagctgaaaaaatcctactgggtcaACTTTTGAGGGGGGCTGGTAATAAA
TTTACAAGGAAGAGGGAATCGTTGTCCATGAAAATCCCAATGATTCTCAG
ATATTTTGACTTCATACTTTCAtggtaaactcgaacccagGTTGCTATTT
GTACTTATTTTActaccgtcgttttgtataagtttcccatttccgcacta
agattcctttgccgTTTTTCTATTGACCAGGACTACGGTTTGTTAAAAAA
TTAGCCTCGGAAAGTTAGGCAAATTTGTtgcacaagattttccgtacctt
tagaaacaaaccctttccaatcgCTTGCTGGTTATCCTatgggaaaaata
gcggaaagatttcggaaaagtgacaagaatcttagtgcggggaaacttat
aaaaaacgcgacggtagtctgaatcgcagacctctataggtataccttat
cgggaaaaacttcgtcggggaaaagtcacgaaattttggacaagtgacga
atattttccccgacgaaagttttccccggccttaatgcgtttaccaacta
accagcaagtgacgaatttttccccgacgaaaattttccccaaagaagtt
ttccccgataaggtacctcTTATATATACATCTTAATAAGGAACTCTTTT
TGATAGATGACGAGCATAGAAGCATATGCTTTCACTTAAACTAATTAAgg
tcaaaatcatcaaaaattttcaatttggttttcagtcaaaaattttgatc
acattacAAACCGAAAGATTGGTAATACAAGAAAAATATTCCCTTATCAT
CATGATCACCCACATGGAGACAAGGTTCACGAACATGAAAACGAGGTTCA
CACGAAACCTGGTCACCATGATGACGACAAGAAAACGCGGCCACAGTTTG
TCGGCCCAAAGGTAAGGACAGTTAATCTCGTATCCATGTATCCCAGGCAT
TTGAGATAAAAGAATTTTAAACATATAATAGACATGATAAAGATAACTTt
agattgaaaagaaaattagcaacctcgtacccagagccactagCACCACT
TTTTTAATTTCACTGACAAAGGTGATGCAACTTGTTTCAACGTCAATTTA
CATACATGACTTacaatttttctttgacttttatATCAATAGCATTTGAG
AAGAAAGACCAATCAACATGGGCGTAAAGGATTACGTCACGGACGTCATG
GGCGAAAAGGATTACGTAATGCAGGCGAAGGAATACGTAATGCAGGCGAA
GGATTACGACACGGGCGTAAAGGATTACGTCACGGGCGTCATGGGCGAAA
AGGATTACGTAATGCAGGCGAAGGAATACGTAATGCAGGCGAAGGATTAC
GACACGGGCGTAAAGGATTACGTCACGGGCGTCATGGGCGAAAAGGATTA
CGTAATGCAGGCGAAGGAATACGTAATGCAGGCGAAGGATTACGACACGG
GCGTAAAGGATTACGTCACGGGCGTCATGGGCGAAAAGGATTACGTAATG
CAGGCGAAGGAATACGTAATGCAGGCGAAGGATTACGACACGGGCGTAAA
GGATTACGTCACGGGCGTCATGGGCGAAAAGGATTACGTAATGAAGGCGA
AGGATTACGACACGAACGAAAAAGATTACACAGATTACATCAAGTTGGTA
CAGAACATCACAACCAAAACAGGACAGGGCGCCATGGCAGAAGAGGAGGG
CGTAAAGGTAAACGCCCCAACCAAAACGGACGTCGCCAAGGACAAGAAGG
GAAGCACGGACGTAGAGGTGGAAACAATAAAAGACAAGGAGGAAAGAATG
TTTTTACAACGGTATTGGGCAAAAAACTGAAGAGACATGCGTTGAAGTTG
TTACAGAAAAGAGCGCTCTCTTCCCAAATTGAGCCTGAGGTCGTGCCTGA
TCAAACAGCACCATGAAAGAGGGGACAGTTCGagtcaatgaagtataagc
ccgaagggctagaattgaatctttaacctttctcaattaagaaaaagtga
agccttaaaatatgcgccgtatttttgacgacgaaTTGAATCTAGCAACT
CaacaattatttttgaaatttagccgTTAAATTTAGTTCCAAtccgtcat
ttgtgtaaaatccAGGcgggccgctcaaggccgcgcaactttggtaggat
tttgttggcttcaaatcctaccaaggagattcgattctagcccttcgggc
ttatacttcattgggacAGTTCGAGTGCTCTCATTGTCTACCGTTGGGAT
TTAAATCTCGTAAAACTTTCTCATAAAAAGAAGAAGATGCTCGTAAAATA
GACAAATAACAACATTAATTTCATATTATGTTTTGTTACGGATTAATAAA
AGAATAATCATAAAATCACTCTTTATTATAGCTTTTTATCCCTGTCTCCC
TCTTATACCACCGTTGAAGTTACGGCCTACAGATTATACACTGAAGACGG
CTTTTTATAAATAAGCTGGATCATTTGGCGCTAAAAACTACGTCGAGTTT
TTCTATTTGTAgtaaatgggctgttccattaaatttccatacaggcgggt
ggacgaaccttttaaagtcaaaaaaagattctaga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013965-exon-sc0000175-1491911889:399943..400084 | TCONS_00013965-exon-sc0000175-1491911889:399943..400084 | Clytia hemisphaerica | exon |
| TCONS_00013965-exon-sc0000175-1510915933:399943..400084 | TCONS_00013965-exon-sc0000175-1510915933:399943..400084 | Clytia hemisphaerica | exon |
| TCONS_00013965-exon-sc0000175-1575043694:399943..400084 | TCONS_00013965-exon-sc0000175-1575043694:399943..400084 | Clytia hemisphaerica | exon |
| TCONS_00013965-exon-sc0000175-1491911889:401078..401253 | TCONS_00013965-exon-sc0000175-1491911889:401078..401253 | Clytia hemisphaerica | exon |
| TCONS_00013965-exon-sc0000175-1510915933:401078..401253 | TCONS_00013965-exon-sc0000175-1510915933:401078..401253 | Clytia hemisphaerica | exon |
| TCONS_00013965-exon-sc0000175-1575043694:401078..401253 | TCONS_00013965-exon-sc0000175-1575043694:401078..401253 | Clytia hemisphaerica | exon |
| TCONS_00013965-exon-sc0000175-1491911889:401485..401566 | TCONS_00013965-exon-sc0000175-1491911889:401485..401566 | Clytia hemisphaerica | exon |
| TCONS_00013965-exon-sc0000175-1510915933:401485..401566 | TCONS_00013965-exon-sc0000175-1510915933:401485..401566 | Clytia hemisphaerica | exon |
| TCONS_00013965-exon-sc0000175-1575043694:401485..401566 | TCONS_00013965-exon-sc0000175-1575043694:401485..401566 | Clytia hemisphaerica | exon |
| TCONS_00013965-exon-sc0000175-1491911889:401867..402927 | TCONS_00013965-exon-sc0000175-1491911889:401867..402927 | Clytia hemisphaerica | exon |
| TCONS_00013965-exon-sc0000175-1510915933:401867..402927 | TCONS_00013965-exon-sc0000175-1510915933:401867..402927 | Clytia hemisphaerica | exon |
| TCONS_00013965-exon-sc0000175-1575043694:401867..402927 | TCONS_00013965-exon-sc0000175-1575043694:401867..402927 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000175 | supercontig | sc0000175:399943..402927 + |
Blast
The following BLAST results are available for this feature:
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