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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014003 ID=TCONS_00014003|Name=TCONS_00014003|organism=Clytia hemisphaerica|type=transcript|length=2095bp
TCTTTTCAAGCTGAAAGAATTGAATTCCCTTGTAGCTCCTCCATCTGAGC
TCTcattaaaaatgaccaaaattctCATAATAACCAAAACTTACCAAAAG
TTATAATAAATTTAAAGTTCCAGAATAATGGCAACTTTTCCAATAATTGA
TGTATCAGCATTGTCTGAAAAGTATTTGGAGGGAGATGGCTACCTGCAAG
ACATATCAAATGACCCAATAACCAAGGATATATCAGACCAAATTATCGAT
GCTTTTTCTCAGTACGGGTTTATTTACATCAAAGGACATGGAATACCCGA
AAACCAAATCAATGGAGTATTTGAAGaatcaagaaacttttttaaatttg
attctgAAACCAAGAAAAGATTTTCAAGAACAAGTAATGATAATTGGGGA
TACGTTCCATACAAAGTTGAAACTTTCGAGAAAATAAGACCGTTCGATTT
GAAAGAGTGTTTTAATTATCTACCACTGACTGACAAAACTCAAGACATGA
ACGCGACAACACCGGACTTTATTTCTAAGAACACATCTTTTTATGGGGTG
TGTAAAAAACTTGGGGTGCTTCTAATAAAAGCAATTACACTGGGTCTGAA
CACAGACGATAAAGTAAACTTTTTATACAACCACCACAATGGTATTGGGA
ATTTCAGCAAGAATGCTACAACATTACGATTACTTTATTATCCGGCTATT
GAAGATAGCAGTACAGTTCTGGAACACCAATTGAGATGTGGAGAACATTC
TGATTATGGAACAATCACATTGTTATTTCAAGACGATGCTGGGGGACTAC
AGgtCGTTTCACCCAGTGGTGAATACGTAGATGCCAAACCAATCCCAGGA
TGCATTGTGGTCAACGCTGGTGATATGCTTCAAATCTGGAgtggtcaaaa
attgaaatcaacACGTCACAGAGTTGTCGTTCCTACTAATATCAATAAAG
CAAGACAATCCTTAGCTTTCTTTTTACATCCAAATAATGATTGTGTGGTG
GAAGATTTGGTAAACAAAGAACAGAATGTAAAAACTAATGCTTGGGATTA
CTTGATGAAAAAGTTTGGAGAAACCTATTGATGATGGAGAggaaaaatca
tccaaaaaaatTCCGTGTTAGTTTCACTCGCGTACATATTTCACTTGCAA
GGAGGAGGGAGGCTCTGGTCTCTCCAGGCAACCTACATTAATACAAACAC
TAATGAGATATAGACGAAACCTAGAGAAGAATTTTCAACCTTTCATAGGC
GAGCAAAAAGGATTAATTAAACTTGCACCTCATTTTGGCTGACGGATTGA
ATCCAAcaatttctttgtttcagattaccatttttcgaattcTGACGCGT
AAATGTTAGTTCCAATCCAGCGATGatggttttgaaaattatatattcAA
TCAtatggtcataatatttgagaaaaaagggaaattcacctgGAAGTTTT
AAAACCACattcgatttgtaagtgctctaaagtaggttggaagggtacaG
TTTAAcactgagttttaacatgagactttaagacttaggaccttagggtc
tgaggatccaaaagttcaaaaatggtccattAAGGCTTCTAATATAGCCT
GAAAGTCTATAAAaccgagccaaattgaaatatccgattaaatttaagaa
atggcccaaaatcgacattctcgcccgaactccgaATTTCgtaaaacgag
gaaataagcttaatagctcaatagatttcgaccatgagCATGATTGTAGA
TGGGTGAGGGATAATACAAAGCTGGTCTGAGCTGGTTCGTTctatatgtt
tttaaaattttatttttgatatctAGATAAAAACAATGTTAAACAATTTT
GATGACAAAGTGGCTACATCAAATATAAAATTACATTACAGGCTGTTTTA
CGCCTTTCAAAGATCGTCTGTAAGGTGTGAAATTCATAGTATTTAACTGT
TTTAggctttttaaaaatataattttataattgatttttattttttgata
tcaTTATAATATATACTTCATACTTCATATACAATTATCTTGTCAagtaa
aaaccaattttctccATCTATGTGAGAGTGTATACAAAATAGCAT Run BLAST on NCBI transcript from alignment at sc0000175:428962..432085- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014003 ID=TCONS_00014003|Name=TCONS_00014003|organism=Clytia hemisphaerica|type=transcript|length=3124bp|location=Sequence derived from alignment at sc0000175:428962..432085- (Clytia hemisphaerica)
TCTTTTCAAGCTGAAAGAATTGAATTCCCTTGTAGCTCCTCCATCTGAGC
TCTCATTAAAAATGACCAAAATTCTCATAATAACCAAAACTTACCAAAAG
TTATAATAAATTTAAAGTTCCAGAATAATGGCAACTTTTCCAATAATTGA
TGTATCAGCATTGTCTGAAAAGTATTTGGAGGGAGATGGCTACCTGCAAG
ACATATCAAATGACCCAATAACCAAGGATATATCAGACCAAATTATCGAT
GCTTTTTCTCAGTACGGGTTTATTTACATCAAAGGACATGGAATACCCGA
AAACCAAATCAATGGAGTATTTGAAGAATCAAGAAACTTTTTTAAATTTG
ATTCTGAAACCAAGAAAAGATTTTCAAGAACAAGTAATGATAATTGGGGA
TACGTTCCATACAAAGTTGAAACTTTCGAGAAAATAAGACCGTTCGATTT
GAAAGAGTGTTTTAATTATCTACCACTGACTGACAAAACTCAAGACATGA
ACGCGACAACACCGGACTTTATTTCTAAGAACACATCTTTTTATGGGGTG
TGTAAAAAACTTGGGGTGCTTCTAATAAAAGCAATTACACTGGGTCTGAA
CACAGACGATAAAGTAAACTTTTTATACAACCACCACAATGGTATTGGGA
ATTTCAGCAAGAATGCTACAACATTACGATTACTTTATTATCCGGCTATT
GAAGATAGCAGTACAGTTCTGGAACACCAATTGAGATGTGGAGAACATTC
TGATTATGGAACAATCACATTGTTATTTCAAGACGATGCTGGGGGACTAC
AGGTTTATTGAATTAATATTAGATCTTTTTCCCCAACCTATTTTTTCTGA
TTGTAGGATAGGACAGTACAAAGGGGGTCTTTTACTCACGGTAGTATAAT
GGTTTGAAAGGCTTCTTCCATAAAAATCTATACTCACGATATTTGAGTAT
ATCGTTATAGTTTTGAGTATATATGCACCATTGCTATGTCTTCTGACATT
ACATCACGGACCCAATAGCTGATTGGTTGTAAGTGACGTAAAATCAGTGA
ATACGACACTTTCAACCAATCAACTTTTGGTGTCCGTAGAATACATTGCA
ATGGTGCATATCATGAGTAAAAAAGTTACTTTAAAATTCCAACATTATGC
CAATACCTATTACACGAAATAAGTCTAAACGTGTGATTACCACAAATAAA
GAAATTCTGTATCAGCCGTTGCGTCCTTAAAAAAGCAAATAAAATTTGTG
TAATTGTGATAATTTCAAGGCAGTTAATTATGTGTTTATTTATTTTTGTG
TAATAAGGTAGTCTCATCATTGCCTTAATGTTATTTCAAGATGATAATGG
GGGATTATAGCTGTATATACACCAATCAACCCTTTATGGTGCGGTTGACC
CCTGAGAGGGTTGGTAATCAATTCACATGGAAATGACGTCTAAGTTAAAT
TTGTCTATGAGAATGTCAATTCTAGAATATCTGATTGAAAGAGGCTATTT
CACTCTACTGCTACTCTACCGCAGTGTGAAGGGAAAAGATTTTTTCCATA
AAAATATTTGTAAGAAGGCCTTGTTGAATAAAAAACCTGAAAAAACTTTA
ATTTTTATAAGAAGTCAGCCTGTCAGTCAGTTTGAAGGAATACCAGATAT
GTCATATTTGTCTAAGATTAGATTGGATATAGAAATTTTATCGACCACCT
TTTAACTTTTAAAAAAGTTACTCCTCTAGGATCGAATAATCGAATAATGA
CCTCCTTAAACCCATGTTTAGTAAATAGTTTGCTAGTAAATACTTTTTTT
CAGAATAACCCAATATTTTTTTTACTTTCAGGTCGTTTCACCCAGTGGTG
AATACGTAGATGCCAAACCAATCCCAGGATGCATTGTGGTCAACGCTGGT
GATATGCTTCAAATCTGGAGTGGTCAAAAATTGAAATCAACACGTCACAG
AGTTGTCGTTCCTACTAATATCAATAAAGCAAGACAATCCTTAGCTTTCT
TTTTACATCCAAATAATGATTGTGTGGTGGAAGATTTGGTAAACAAAGAA
CAGAATGTAAAAACTAATGCTTGGGATTACTTGATGAAAAAGTTTGGAGA
AACCTATTGATGATGGAGAGGAAAAATCATCCAAAAAAATTCCGTGTTAG
TTTCACTCGCGTACATATTTCACTTGCAAGGAGGAGGGAGGCTCTGGTCT
CTCCAGGCAACCTACATTAATACAAACACTAATGAGATATAGACGAAACC
TAGAGAAGAATTTTCAACCTTTCATAGGCGAGCAAAAAGGATTAATTAAA
CTTGCACCTCATTTTGGCTGACGGATTGAATCCAACAATTTCTTTGTTTC
AGATTACCATTTTTCGAATTCTGACGCGTAAATGTTAGTTCCAATCCAGC
GATGATGGTTTTGAAAATTATATATTCAATCATATGGTCATAATATTTGA
GAAAAAAGGGAAATTCACCTGGAAGTTTTAAAACCACATTCGATTTGTAA
GTGCTCTAAAGTAGGTTGGAAGGGTACAGTTTAACACTGAGTTTTAACAT
GAGACTTTAAGACTTAGGACCTTAGGGTCTGAGGATCCAAAAGTTCAAAA
ATGGTCCATTAAGGCTTCTAATATAGCCTGAAAGTCTATAAAACCGAGCC
AAATTGAAATATCCGATTAAATTTAAGAAATGGCCCAAAATCGACATTCT
CGCCCGAACTCCGAATTTCGTAAAACGAGGAAATAAGCTTAATAGCTCAA
TAGATTTCGACCATGAGCATGATTGTAGATGGGTGAGGGATAATACAAAG
CTGGTCTGAGCTGGTTCGTTCTATATGTTTTTAAAATTTTATTTTTGATA
TCTAGATAAAAACAATGTTAAACAATTTTGATGACAAAGTGGCTACATCA
AATATAAAATTACATTACAGGCTGTTTTACGCCTTTCAAAGATCGTCTGT
AAGGTGTGAAATTCATAGTATTTAACTGTTTTAGGCTTTTTAAAAATATA
ATTTTATAATTGATTTTTATTTTTTGATATCATTATAATATATACTTCAT
ACTTCATATACAATTATCTTGTCAAGTAAAAACCAATTTTCTCCATCTAT
GTGAGAGTGTATACAAAATAGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014003-exon-sc0000175-1575043694:431284..432085 | TCONS_00014003-exon-sc0000175-1575043694:431284..432085 | Clytia hemisphaerica | exon |
| TCONS_00014003-exon-sc0000175-1575043694:428962..430254 | TCONS_00014003-exon-sc0000175-1575043694:428962..430254 | Clytia hemisphaerica | exon |
| TCONS_00014003-exon-sc0000175-1510915933:431284..432085 | TCONS_00014003-exon-sc0000175-1510915933:431284..432085 | Clytia hemisphaerica | exon |
| TCONS_00014003-exon-sc0000175-1510915933:428962..430254 | TCONS_00014003-exon-sc0000175-1510915933:428962..430254 | Clytia hemisphaerica | exon |
| TCONS_00014003-exon-sc0000175-1491911889:431284..432085 | TCONS_00014003-exon-sc0000175-1491911889:431284..432085 | Clytia hemisphaerica | exon |
| TCONS_00014003-exon-sc0000175-1491911889:428962..430254 | TCONS_00014003-exon-sc0000175-1491911889:428962..430254 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000175 | supercontig | sc0000175:428962..432085 - |
Blast
The following BLAST results are available for this feature:
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