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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014004 ID=TCONS_00014004|Name=TCONS_00014004|organism=Clytia hemisphaerica|type=transcript|length=2113bp
GGCCATACTTGTTGTGTGTCTTTTCAAGCTGAAAGAATTGAATTCCCTTG
TAGCTCCTCCATCTGAGCTCTcattaaaaatgaccaaaattctCATAATA
ACCAAAACTTACCAAAAGTTATAATAAATTTAAAGTTCCAGAATAATGGC
AACTTTTCCAATAATTGATGTATCAGCATTGTCTGAAAAGTATTTGGAGG
GAGATGGCTACCTGCAAGACATATCAAATGACCCAATAACCAAGGATATA
TCAGACCAAATTATCGATGCTTTTTCTCAGTACGGGTTTATTTACATCAA
AGGACATGGAATACCCGAAAACCAAATCAATGGAGTATTTGAAGaatcaa
gaaacttttttaaatttgattctgAAACCAAGAAAAGATTTTCAAGAACA
AGTAATGATAATTGGGGATACGTTCCATACAAAGTTGAAACTTTCGAGAA
AATAAGACCGTTCGATTTGAAAGAGTGTTTTAATTATCTACCACTGACTG
ACAAAACTCAAGACATGAACGCGACAACACCGGACTTTATTTCTAAGAAC
ACATCTTTTTATGGGGTGTGTAAAAAACTTGGGGTGCTTCTAATAAAAGC
AATTACACTGGGTCTGAACACAGACGATAAAGTAAACTTTTTATACAACC
ACCACAATGGTATTGGGAATTTCAGCAAGAATGCTACAACATTACGATTA
CTTTATTATCCGGCTATTGAAGATAGCAGTACAGTTCTGGAACACCAATT
GAGATGTGGAGAACATTCTGATTATGGAACAATCACATTGTTATTTCAAG
ACGATGCTGGGGGACTACAGgtCGTTTCACCCAGTGGTGAATACGTAGAT
GCCAAACCAATCCCAGGATGCATTGTGGTCAACGCTGGTGATATGCTTCA
AATCTGGAgtggtcaaaaattgaaatcaacACGTCACAGAGTTGTCGTTC
CTACTAATATCAATAAAGCAAGACAATCCTTAGCTTTCTTTTTACATCCA
AATAATGATTGTGTGGTGGAAGATTTGGTAAACAAAGAACAGAATGTAAA
AACTAATGCTTGGGATTACTTGATGAAAAAGTTTGGAGAAACCTATTGAT
GATGGAGAggaaaaatcatccaaaaaaatTCCGTGTTAGTTTCACTCGCG
TACATATTTCACTTGCAAGGAGGAGGGAGGCTCTGGTCTCTCCAGGCAAC
CTACATTAATACAAACACTAATGAGATATAGACGAAACCTAGAGAAGAAT
TTTCAACCTTTCATAGGCGAGCAAAAAGGATTAATTAAACTTGCACCTCA
TTTTGGCTGACGGATTGAATCCAAcaatttctttgtttcagattaccatt
tttcgaattcTGACGCGTAAATGTTAGTTCCAATCCAGCGATGatggttt
tgaaaattatatattcAATCAtatggtcataatatttgagaaaaaaggga
aattcacctgGAAGTTTTAAAACCACattcgatttgtaagtgctctaaag
taggttggaagggtacaGTTTAAcactgagttttaacatgagactttaag
acttaggaccttagggtctgaggatccaaaagttcaaaaatggtccattA
AGGCTTCTAATATAGCCTGAAAGTCTATAAAaccgagccaaattgaaata
tccgattaaatttaagaaatggcccaaaatcgacattctcgcccgaactc
cgaATTTCgtaaaacgaggaaataagcttaatagctcaatagatttcgac
catgagCATGATTGTAGATGGGTGAGGGATAATACAAAGCTGGTCTGAGC
TGGTTCGTTctatatgtttttaaaattttatttttgatatctAGATAAAA
ACAATGTTAAACAATTTTGATGACAAAGTGGCTACATCAAATATAAAATT
ACATTACAGGCTGTTTTACGCCTTTCAAAGATCGTCTGTAAGGTGTGAAA
TTCATAGTATTTAACTGTTTTAggctttttaaaaatataattttataatt
gatttttattttttgatatcaTTATAATATATACTTCATACTTCATATAC
AATTATCTTGTCAagtaaaaaccaattttctccATCTATGTGAGAGTGTA
TACAAAATAGCAT Run BLAST on NCBI protein sequence of TCONS_00014004-protein >TCONS_00014004-protein ID=TCONS_00014004-protein|Name=TCONS_00014004-protein|organism=Clytia hemisphaerica|type=polypeptide|length=317bp
MATFPIIDVSALSEKYLEGDGYLQDISNDPITKDISDQIIDAFSQYGFIY
IKGHGIPENQINGVFEESRNFFKFDSETKKRFSRTSNDNWGYVPYKVETF
EKIRPFDLKECFNYLPLTDKTQDMNATTPDFISKNTSFYGVCKKLGVLLI
KAITLGLNTDDKVNFLYNHHNGIGNFSKNATTLRLLYYPAIEDSSTVLEH
QLRCGEHSDYGTITLLFQDDAGGLQVVSPSGEYVDAKPIPGCIVVNAGDM
LQIWSGQKLKSTRHRVVVPTNINKARQSLAFFLHPNNDCVVEDLVNKEQN
VKTNAWDYLMKKFGETY Run BLAST on NCBI transcript from alignment at sc0000175:428962..434079- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014004 ID=TCONS_00014004|Name=TCONS_00014004|organism=Clytia hemisphaerica|type=transcript|length=5118bp|location=Sequence derived from alignment at sc0000175:428962..434079- (Clytia hemisphaerica)
GGCCATACTTGTTGTGTGTCTTTTCAAGCTGAAAGAATTGAATTCCCTTG
TAGCTCCTCCATCTGAGCTCTCATTAAAAATGACCAAAATTCTCATAATA
ACCAAAACTTACCAAAAGTTATAATAAATTTAAAGTTCCAGAATAATGGC
AACTTTTCCAATAATTGATGTATCAGCATTGTCTGAAAAGTATTTGGAGG
GAGATGGCTACCTGCAAGACATATCAAATGACCCAATAACCAAGGATATA
TCAGACCAAATTATCGATGCTTTTTCTCAGTACGGGTTTATTTACATCAA
AGGACATGGAATACCCGAAAACCAAATCAATGGAGTATTTGAAGAATCAA
GAAACTTTTTTAAATTTGATTCTGAAACCAAGAAAAGATTTTCAAGAACA
AGTAATGATAATTGGGGATACGTTCCATACAAAGTTGAAACTTTCGAGAA
AATAAGACCGTTCGATTTGAAAGAGTGTTTTAATTATCTACCACTGACTG
ACAAAACTCAAGACATGAACGCGACAACACCGGACTTTATTTCTAAGAAC
ACATCTTTTTATGGGGTGTGTAAAAAACTTGGGGTGCTTCTAATAAAAGC
AATTACACTGGGTCTGAACACAGACGATAAAGTAAACTTTTTATACAACC
ACCACAATGGTATTGGGAATTTCAGCAAGAATGCTACAACATTACGATTA
CTTTATTATCCGGCTATTGAAGATAGCAGTACAGTTCTGGAACACCAATT
GAGATGTGGAGAACATTCTGATTATGGAACAATCACATTGTTATTTCAAG
ACGATGCTGGGGGACTACAGGTTTATTAAATTAATATTAGATCTTTTTCC
CCAACCTATTTTTTCTGATTGTAGGATAGGACAGTACAAAGGGGGTCTTT
TACTCACAGTAGTATAATGGTTTGAAAGGCTTCTTCCATAAAAATCTATA
CTCACGATATTTGAGTATATCGTTATGGTTTTGAGTATATATATGCACCA
TTGCAATGTCTTCTGACATTACATCACGGACCCAATAGCTGATTGGTTGT
AAGTGATGTAAAATTAATTAATACGTCACTTTCAACCAATCAACTTTTGG
TGTCTGTAGAATACATTGCAATGGTGCATATCATGAATAAAAAAGTTGCT
TTAAAATTCCAACATTATGCCAATACCTATTACACGAAATAAGTCTAGAC
ATGTGATTACCACAAATCAAGAAATTCTGTATTACTAAAATCAGCCGTTG
CGTCCTTAAAAAAGCAAATAAAATTTGTGTAATTGTGATAATTTCAAGGC
AGTTAATTATGTGTCTATTTATTTTTGTGTAATAAGGTAGTCTCATCATT
GCCTTAATGTTATTTCAAGATGATAATGGGGGATTATAGCTGTATATACA
CCAATCAACCCTTTATGGTGCGGTTGACCCCTGAGAGGGTTGGTAATCAA
TTCACATGGAAATGACGTCTAAGTTAAATTTGTCTATGAGAATGTCAATT
CTAGAATATCTGATTGAAAGAGGCTATTTCACTCTACTGCTACTCTACCG
CAGTGTGAAGGGAAAAGATTTTTTCCATAAAAATATTTGTAAGAAGGCCT
TGTTGAATAAAAAACCTGAAAAAACTTTAACTTTTATAAGAAGTCAGCCT
GTCAGTCAGTTTGAAGGAATACCAGATATGTCATATTTGTCTAAGATTAG
AGTGGATATAGATAGAGGAAATTTTATCGACCACCTTTGAACTTTTAAGT
TACTCCTCTAGGATCGAATAATCGAATAATGTCCTCCTTAAACATGGCGC
TAGTAAATACTTTTTTTCAAAATAACTCAATATTTTGTTTTACTTTCAGG
TTGTTTCACCCAGTGGTGAATACGTAGATGCCAAACCAATCCCAGGATGC
ATTGTGGTCAACGCTGGTGATATGCTNTCAAAAGTCACAATTAGTGTGAC
ATAAAACCTACTCCTTCCTCTAGAATGGCCATACTTGTTGTGTGTCTTTT
CAAGCTGAAAGAATTGAATTCCCTTGTAGCTCCTCCATCTGAGCTCTCAT
TAAAAATGACCAAAATTCTCATAATAACCAAAACTTACCAAAAGTTATAA
TAAATTTAAAGTTCCAGAATAATGGCAACTTTTCCAATAATTGATGTATC
AGCATTGTCTGAAAAGTATTTGGAGGGAGATGGCTACCTGCAAGACATAT
CAAATGACCCAATAACCAAGGATATATCAGACCAAATTATCGATGCTTTT
TCTCAGTACGGGTTTATTTACATCAAAGGACATGGAATACCCGAAAACCA
AATCAATGGAGTATTTGAAGAATCAAGAAACTTTTTTAAATTTGATTCTG
AAACCAAGAAAAGATTTTCAAGAACAAGTAATGATAATTGGGGATACGTT
CCATACAAAGTTGAAACTTTCGAGAAAATAAGACCGTTCGATTTGAAAGA
GTGTTTTAATTATCTACCACTGACTGACAAAACTCAAGACATGAACGCGA
CAACACCGGACTTTATTTCTAAGAACACATCTTTTTATGGGGTGTGTAAA
AAACTTGGGGTGCTTCTAATAAAAGCAATTACACTGGGTCTGAACACAGA
CGATAAAGTAAACTTTTTATACAACCACCACAATGGTATTGGGAATTTCA
GCAAGAATGCTACAACATTACGATTACTTTATTATCCGGCTATTGAAGAT
AGCAGTACAGTTCTGGAACACCAATTGAGATGTGGAGAACATTCTGATTA
TGGAACAATCACATTGTTATTTCAAGACGATGCTGGGGGACTACAGGTTT
ATTGAATTAATATTAGATCTTTTTCCCCAACCTATTTTTTCTGATTGTAG
GATAGGACAGTACAAAGGGGGTCTTTTACTCACGGTAGTATAATGGTTTG
AAAGGCTTCTTCCATAAAAATCTATACTCACGATATTTGAGTATATCGTT
ATAGTTTTGAGTATATATGCACCATTGCTATGTCTTCTGACATTACATCA
CGGACCCAATAGCTGATTGGTTGTAAGTGACGTAAAATCAGTGAATACGA
CACTTTCAACCAATCAACTTTTGGTGTCCGTAGAATACATTGCAATGGTG
CATATCATGAGTAAAAAAGTTACTTTAAAATTCCAACATTATGCCAATAC
CTATTACACGAAATAAGTCTAAACGTGTGATTACCACAAATAAAGAAATT
CTGTATCAGCCGTTGCGTCCTTAAAAAAGCAAATAAAATTTGTGTAATTG
TGATAATTTCAAGGCAGTTAATTATGTGTTTATTTATTTTTGTGTAATAA
GGTAGTCTCATCATTGCCTTAATGTTATTTCAAGATGATAATGGGGGATT
ATAGCTGTATATACACCAATCAACCCTTTATGGTGCGGTTGACCCCTGAG
AGGGTTGGTAATCAATTCACATGGAAATGACGTCTAAGTTAAATTTGTCT
ATGAGAATGTCAATTCTAGAATATCTGATTGAAAGAGGCTATTTCACTCT
ACTGCTACTCTACCGCAGTGTGAAGGGAAAAGATTTTTTCCATAAAAATA
TTTGTAAGAAGGCCTTGTTGAATAAAAAACCTGAAAAAACTTTAATTTTT
ATAAGAAGTCAGCCTGTCAGTCAGTTTGAAGGAATACCAGATATGTCATA
TTTGTCTAAGATTAGATTGGATATAGAAATTTTATCGACCACCTTTTAAC
TTTTAAAAAAGTTACTCCTCTAGGATCGAATAATCGAATAATGACCTCCT
TAAACCCATGTTTAGTAAATAGTTTGCTAGTAAATACTTTTTTTCAGAAT
AACCCAATATTTTTTTTACTTTCAGGTCGTTTCACCCAGTGGTGAATACG
TAGATGCCAAACCAATCCCAGGATGCATTGTGGTCAACGCTGGTGATATG
CTTCAAATCTGGAGTGGTCAAAAATTGAAATCAACACGTCACAGAGTTGT
CGTTCCTACTAATATCAATAAAGCAAGACAATCCTTAGCTTTCTTTTTAC
ATCCAAATAATGATTGTGTGGTGGAAGATTTGGTAAACAAAGAACAGAAT
GTAAAAACTAATGCTTGGGATTACTTGATGAAAAAGTTTGGAGAAACCTA
TTGATGATGGAGAGGAAAAATCATCCAAAAAAATTCCGTGTTAGTTTCAC
TCGCGTACATATTTCACTTGCAAGGAGGAGGGAGGCTCTGGTCTCTCCAG
GCAACCTACATTAATACAAACACTAATGAGATATAGACGAAACCTAGAGA
AGAATTTTCAACCTTTCATAGGCGAGCAAAAAGGATTAATTAAACTTGCA
CCTCATTTTGGCTGACGGATTGAATCCAACAATTTCTTTGTTTCAGATTA
CCATTTTTCGAATTCTGACGCGTAAATGTTAGTTCCAATCCAGCGATGAT
GGTTTTGAAAATTATATATTCAATCATATGGTCATAATATTTGAGAAAAA
AGGGAAATTCACCTGGAAGTTTTAAAACCACATTCGATTTGTAAGTGCTC
TAAAGTAGGTTGGAAGGGTACAGTTTAACACTGAGTTTTAACATGAGACT
TTAAGACTTAGGACCTTAGGGTCTGAGGATCCAAAAGTTCAAAAATGGTC
CATTAAGGCTTCTAATATAGCCTGAAAGTCTATAAAACCGAGCCAAATTG
AAATATCCGATTAAATTTAAGAAATGGCCCAAAATCGACATTCTCGCCCG
AACTCCGAATTTCGTAAAACGAGGAAATAAGCTTAATAGCTCAATAGATT
TCGACCATGAGCATGATTGTAGATGGGTGAGGGATAATACAAAGCTGGTC
TGAGCTGGTTCGTTCTATATGTTTTTAAAATTTTATTTTTGATATCTAGA
TAAAAACAATGTTAAACAATTTTGATGACAAAGTGGCTACATCAAATATA
AAATTACATTACAGGCTGTTTTACGCCTTTCAAAGATCGTCTGTAAGGTG
TGAAATTCATAGTATTTAACTGTTTTAGGCTTTTTAAAAATATAATTTTA
TAATTGATTTTTATTTTTTGATATCATTATAATATATACTTCATACTTCA
TATACAATTATCTTGTCAAGTAAAAACCAATTTTCTCCATCTATGTGAGA
GTGTATACAAAATAGCAT Coding sequence (CDS) from alignment at sc0000175:428962..434079- >TCONS_00014004 ID=TCONS_00014004|Name=TCONS_00014004|organism=Clytia hemisphaerica|type=CDS|length=1908bp|location=Sequence derived from alignment at sc0000175:428962..434079- (Clytia hemisphaerica)
GTCGTTTCACCCAGTGGTGAATACGTAGATGCCAAACCAATCCCAGGATG
CATTGTGGTCAACGCTGGTGATATGCTTCAAATCTGGAGTGGTCAAAAAT
TGAAATCAACACGTCACAGAGTTGTCGTTCCTACTAATATCAATAAAGCA
AGACAATCCTTAGCTTTCTTTTTACATCCAAATAATGATTGTGTGGTGGA
AGATTTGGTAAACAAAGAACAGAATGTAAAAACTAATGCTTGGGATTACT
TGATGAAAAAGTTTGGAGAAACCTATTGAATGGCAACTTTTCCAATAATT
GATGTATCAGCATTGTCTGAAAAGTATTTGGAGGGAGATGGCTACCTGCA
AGACATATCAAATGACCCAATAACCAAGGATATATCAGACCAAATTATCG
ATGCTTTTTCTCAGTACGGGTTTATTTACATCAAAGGACATGGAATACCC
GAAAACCAAATCAATGGAGTATTTGAAGAATCAAGAAACTTTTTTAAATT
TGATTCTGAAACCAAGAAAAGATTTTCAAGAACAAGTAATGATAATTGGG
GATACGTTCCATACAAAGTTGAAACTTTCGAGAAAATAAGACCGTTCGAT
TTGAAAGAGTGTTTTAATTATCTACCACTGACTGACAAAACTCAAGACAT
GAACGCGACAACACCGGACTTTATTTCTAAGAACACATCTTTTTATGGGG
TGTGTAAAAAACTTGGGGTGCTTCTAATAAAAGCAATTACACTGGGTCTG
AACACAGACGATAAAGTAAACTTTTTATACAACCACCACAATGGTATTGG
GAATTTCAGCAAGAATGCTACAACATTACGATTACTTTATTATCCGGCTA
TTGAAGATAGCAGTACAGTTCTGGAACACCAATTGAGATGTGGAGAACAT
TCTGATTATGGAACAATCACATTGTTATTTCAAGACGATGCTGGGGGACT
ACAGGTCGTTTCACCCAGTGGTGAATACGTAGATGCCAAACCAATCCCAG
GATGCATTGTGGTCAACGCTGGTGATATGCTTCAAATCTGGAGTGGTCAA
AAATTGAAATCAACACGTCACAGAGTTGTCGTTCCTACTAATATCAATAA
AGCAAGACAATCCTTAGCTTTCTTTTTACATCCAAATAATGATTGTGTGG
TGGAAGATTTGGTAAACAAAGAACAGAATGTAAAAACTAATGCTTGGGAT
TACTTGATGAAAAAGTTTGGAGAAACCTATTGAATGGCAACTTTTCCAAT
AATTGATGTATCAGCATTGTCTGAAAAGTATTTGGAGGGAGATGGCTACC
TGCAAGACATATCAAATGACCCAATAACCAAGGATATATCAGACCAAATT
ATCGATGCTTTTTCTCAGTACGGGTTTATTTACATCAAAGGACATGGAAT
ACCCGAAAACCAAATCAATGGAGTATTTGAAGAATCAAGAAACTTTTTTA
AATTTGATTCTGAAACCAAGAAAAGATTTTCAAGAACAAGTAATGATAAT
TGGGGATACGTTCCATACAAAGTTGAAACTTTCGAGAAAATAAGACCGTT
CGATTTGAAAGAGTGTTTTAATTATCTACCACTGACTGACAAAACTCAAG
ACATGAACGCGACAACACCGGACTTTATTTCTAAGAACACATCTTTTTAT
GGGGTGTGTAAAAAACTTGGGGTGCTTCTAATAAAAGCAATTACACTGGG
TCTGAACACAGACGATAAAGTAAACTTTTTATACAACCACCACAATGGTA
TTGGGAATTTCAGCAAGAATGCTACAACATTACGATTACTTTATTATCCG
GCTATTGAAGATAGCAGTACAGTTCTGGAACACCAATTGAGATGTGGAGA
ACATTCTGATTATGGAACAATCACATTGTTATTTCAAGACGATGCTGGGG
GACTACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014004-exon-sc0000175-1575043694:433260..434079 | TCONS_00014004-exon-sc0000175-1575043694:433260..434079 | Clytia hemisphaerica | exon |
| TCONS_00014004-exon-sc0000175-1575043694:428962..430254 | TCONS_00014004-exon-sc0000175-1575043694:428962..430254 | Clytia hemisphaerica | exon |
| TCONS_00014004-exon-sc0000175-1510915933:433260..434079 | TCONS_00014004-exon-sc0000175-1510915933:433260..434079 | Clytia hemisphaerica | exon |
| TCONS_00014004-exon-sc0000175-1510915933:428962..430254 | TCONS_00014004-exon-sc0000175-1510915933:428962..430254 | Clytia hemisphaerica | exon |
| TCONS_00014004-exon-sc0000175-1491911889:433260..434079 | TCONS_00014004-exon-sc0000175-1491911889:433260..434079 | Clytia hemisphaerica | exon |
| TCONS_00014004-exon-sc0000175-1491911889:428962..430254 | TCONS_00014004-exon-sc0000175-1491911889:428962..430254 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000175 | supercontig | sc0000175:428962..434079 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016491 | oxidoreductase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| molecular_function |
GO:0016491 |
oxidoreductase activity |
Blast
The following BLAST results are available for this feature:
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