TCONS_00014008 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014008
Unique NameTCONS_00014008
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length518

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014008 ID=TCONS_00014008|Name=TCONS_00014008|organism=Clytia hemisphaerica|type=transcript|length=518bp
ACTGAGGTCATTGCAGTGTTATTAGAATGTTTTGAGCATTCGAATGTTGC
CAGGgagaaacaaacaaaatcaaaacaaaaatattttttgagggAGAGGA
CCTAGGACAGACTTACTGATACAGCATGGAACTTATGGAAGAGAAAAACT
TCACTTATTTCATTATATGCAAAGAATTAAAGATGAAGACAGCCAGATCA
ATGGCAGAGCTATGGAGTGATATCATTTAGAATCGTTTTTGTCTCTATGT
CTATGCTTGTCTGTTGTGCCTGGATCATGAGAGTTCGTGAAAAGTAGATT
GGTTAGAATAAGCTTAGATGTTTTCCAGCAAAAAGATGCTGAATTTTATC
ACAAGCTTATTCTGTAAGTCTAATTTTCATAGAACTTAAACAAAGATCCT
GAATATCCTGAATTTAAAGGTTTCTTTATCaaatatatacaatttttttt
taaagtagggaaatcttttcttctttaaaCTTTATCACAAATAATTATCA
AAAGGTATGTGCTTGGCC
Run BLAST on NCBI

transcript from alignment at sc0000175:27390..27907

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014008 ID=TCONS_00014008|Name=TCONS_00014008|organism=Clytia hemisphaerica|type=transcript|length=518bp|location=Sequence derived from alignment at sc0000175:27390..27907 (Clytia hemisphaerica)
GGCCAAGCACATACCTTTTGATAATTATTTGTGATAAAGtttaaagaaga
aaagatttccctactttaaaaaaaaattgtatatatttGATAAAGAAACC
TTTAAATTCAGGATATTCAGGATCTTTGTTTAAGTTCTATGAAAATTAGA
CTTACAGAATAAGCTTGTGATAAAATTCAGCATCTTTTTGCTGGAAAACA
TCTAAGCTTATTCTAACCAATCTACTTTTCACGAACTCTCATGATCCAGG
CACAACAGACAAGCATAGACATAGAGACAAAAACGATTCTAAATGATATC
ACTCCATAGCTCTGCCATTGATCTGGCTGTCTTCATCTTTAATTCTTTGC
ATATAATGAAATAAGTGAAGTTTTTCTCTTCCATAAGTTCCATGCTGTAT
CAGTAAGTCTGTCCTAGGTCCTCTccctcaaaaaatatttttgttttgat
tttgtttgtttctcCCTGGCAACATTCGAATGCTCAAAACATTCTAATAA
CACTGCAATGACCTCAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007827XLOC_007827Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014008-exon-sc0000175-1491911889:27390..27907TCONS_00014008-exon-sc0000175-1491911889:27390..27907Clytia hemisphaericaexon
TCONS_00014008-exon-sc0000175-1510915933:27390..27907TCONS_00014008-exon-sc0000175-1510915933:27390..27907Clytia hemisphaericaexon
TCONS_00014008-exon-sc0000175-1575043694:27390..27907TCONS_00014008-exon-sc0000175-1575043694:27390..27907Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000175supercontigsc0000175:27390..27907 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.129999	0	0.154834	0.122352	0	0	0.0967521	0	0.581613	0.305864	0.172802	0.555102	0	0.0699648	0	0	0	0	0	0.162439	0	0	4.78458	3.08047	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014008 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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