TCONS_00014015 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014015
Unique NameTCONS_00014015
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length673

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014015 ID=TCONS_00014015|Name=TCONS_00014015|organism=Clytia hemisphaerica|type=transcript|length=673bp
CTGAATACATGCTTGGATGAATGTGTCTTTGTCCTCAGTTGTTGATGGTA
GAGTTATATTGACTGTTTCCAACTCTTTGACCATTAGATACTTTATCTTT
ACATTGAGAATCCAATTACTGAATTCTTTTCCATTGATTTCCCTGTTAGT
GTTGTTTTCTTGCAATTCAGAGAAAGCTTGAAGTCCCTTTGTTAACCAAT
GGAGATAATGGAAATATTGAAGCTCACGTGTGAACCAATGGGCTGGCGAA
TCCTTCTTCAAATTATCCAAACATTTCTTAAGAGTGTTTATGTCAACATC
GTAGTCAAGGAGGTGTACGGTTGAATCCTTCTTCGCGTATTGGTGTGATT
GGAAAACCGGGGGAATAAATACAGGATCATGGCGGTTGGTGTTGAataat
gctgaatcagcatactCTCTTAAGAGAAGCTGATCAGCGGCAAGAATAGG
GTCGTTAAATAACTGACCATTCCCGAGGTTGAACTTTCGGTTTTGTTTGT
CGATGGTGGATTGTGCATTTATCAATATTTGATGATATAATGACGTTCGC
GGGGTGCATTTTGATGGATCGATAATCTGCGATTTCAGTGCAGCGACTTT
CTGTTGAAAATTCAATTGTGATGCCATTTAGAATAAGAATAAAAGTTTTT
CTCgaattaaaagtcaaaaaatt
Run BLAST on NCBI

protein sequence of TCONS_00014015-protein

>TCONS_00014015-protein ID=TCONS_00014015-protein|Name=TCONS_00014015-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
MASQLNFQQKVAALKSQIIDPSKCTPRTSLYHQILINAQSTIDKQNRKFN
LGNGQLFNDPILAADQLLLREYADSALFNTNRHDPVFIPPVFQSHQYAKK
DSTVHLLDYDVDINTLKKCLDNLKKDSPAHWFTRELQYFHYLHWLTKGLQ
AFSELQENNTNREINGKEFSNWILNVKIKYLMVKELETVNITLPSTTEDK
DTFIQACIQ
Run BLAST on NCBI

transcript from alignment at sc0000175:115466..116138

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014015 ID=TCONS_00014015|Name=TCONS_00014015|organism=Clytia hemisphaerica|type=transcript|length=673bp|location=Sequence derived from alignment at sc0000175:115466..116138 (Clytia hemisphaerica)
aattttttgacttttaattcGAGAAAAACTTTTATTCTTATTCTAAATGG
CATCACAATTGAATTTTCAACAGAAAGTCGCTGCACTGAAATCGCAGATT
ATCGATCCATCAAAATGCACCCCGCGAACGTCATTATATCATCAAATATT
GATAAATGCACAATCCACCATCGACAAACAAAACCGAAAGTTCAACCTCG
GGAATGGTCAGTTATTTAACGACCCTATTCTTGCCGCTGATCAGCTTCTC
TTAAGAGagtatgctgattcagcattatTCAACACCAACCGCCATGATCC
TGTATTTATTCCCCCGGTTTTCCAATCACACCAATACGCGAAGAAGGATT
CAACCGTACACCTCCTTGACTACGATGTTGACATAAACACTCTTAAGAAA
TGTTTGGATAATTTGAAGAAGGATTCGCCAGCCCATTGGTTCACACGTGA
GCTTCAATATTTCCATTATCTCCATTGGTTAACAAAGGGACTTCAAGCTT
TCTCTGAATTGCAAGAAAACAACACTAACAGGGAAATCAATGGAAAAGAA
TTCAGTAATTGGATTCTCAATGTAAAGATAAAGTATCTAATGGTCAAAGA
GTTGGAAACAGTCAATATAACTCTACCATCAACAACTGAGGACAAAGACA
CATTCATCCAAGCATGTATTCAG

Coding sequence (CDS) from alignment at sc0000175:115466..116138

>TCONS_00014015 ID=TCONS_00014015|Name=TCONS_00014015|organism=Clytia hemisphaerica|type=CDS|length=627bp|location=Sequence derived from alignment at sc0000175:115466..116138 (Clytia hemisphaerica)
ATGGCATCACAATTGAATTTTCAACAGAAAGTCGCTGCACTGAAATCGCA
GATTATCGATCCATCAAAATGCACCCCGCGAACGTCATTATATCATCAAA
TATTGATAAATGCACAATCCACCATCGACAAACAAAACCGAAAGTTCAAC
CTCGGGAATGGTCAGTTATTTAACGACCCTATTCTTGCCGCTGATCAGCT
TCTCTTAAGAGagtatgctgattcagcattatTCAACACCAACCGCCATG
ATCCTGTATTTATTCCCCCGGTTTTCCAATCACACCAATACGCGAAGAAG
GATTCAACCGTACACCTCCTTGACTACGATGTTGACATAAACACTCTTAA
GAAATGTTTGGATAATTTGAAGAAGGATTCGCCAGCCCATTGGTTCACAC
GTGAGCTTCAATATTTCCATTATCTCCATTGGTTAACAAAGGGACTTCAA
GCTTTCTCTGAATTGCAAGAAAACAACACTAACAGGGAAATCAATGGAAA
AGAATTCAGTAATTGGATTCTCAATGTAAAGATAAAGTATCTAATGGTCA
AAGAGTTGGAAACAGTCAATATAACTCTACCATCAACAACTGAGGACAAA
GACACATTCATCCAAGCATGTATTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007834XLOC_007834Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014015-exon-sc0000175-1491911889:115466..116138TCONS_00014015-exon-sc0000175-1491911889:115466..116138Clytia hemisphaericaexon
TCONS_00014015-exon-sc0000175-1510915933:115466..116138TCONS_00014015-exon-sc0000175-1510915933:115466..116138Clytia hemisphaericaexon
TCONS_00014015-exon-sc0000175-1575043694:115466..116138TCONS_00014015-exon-sc0000175-1575043694:115466..116138Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014015-proteinTCONS_00014015-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000175supercontigsc0000175:115466..116138 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.261463	0.106737	0	0.277481	0	0.0951762	0	0	0.504264	0.472789	0.259178	0.320724	0.200016	0.411672	1.31327	1.21293	0.958539	1.05458	0.474582	0.389088	1.99711	0.765218	0.471776	0.155794	0.402805	0.392978
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014015 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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