TCONS_00014030 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00014030
Unique Name	TCONS_00014030
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	302

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000180:820..5111+

transcript sequence

>TCONS_00014030 ID=TCONS_00014030|Name=TCONS_00014030|organism=Clytia hemisphaerica|type=transcript|length=302bp
TGATGACGAACAACAGACTGTTGATGTCACTGGTGGTCTAGAACCTGAAC
ATGATGATGGCAATGCTCTTCTTCAGCAAGATACAGAaaCTGCTGATAGT
GAAAGAACATTGACTGAGAGTGAAAGAACATTGACAGCATTAAACTTGTC
AACACATGATGAAGGAAAAATGAGTGTGTTTTTACAGAAATGGCAATGAA
TGTGTCAAGGAAATTTATTCAGACAAATAGAGGGAATCAGAATCAAGTGA
TGAAGAAAAATCTGCACTAAATGTAGCATCCTTGATGCTGGACAAATAAG
TG

Run BLAST on NCBI

transcript from alignment at sc0000180:820..5111+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00014030 ID=TCONS_00014030|Name=TCONS_00014030|organism=Clytia hemisphaerica|type=transcript|length=4292bp|location=Sequence derived from alignment at sc0000180:820..5111+ (Clytia hemisphaerica)
TGATGACGAACAACAGACTGTTGATGTCACTGGTGGTCTAGAACCTGAAC
ATGATGATGGCAATGCTCTTCTTCAGCAAGATACAGAGTGAGTGATTCTT
ATAAATCCCTGCAGTAGCAatttttactgcaattgcggtataaaaaccag
gcgtagttaatcgatataatcgatgatcttgagtaatcgataaataattg
ataagtaatcgatggattagatattgattaaccgatagaattgataggta
atcgattttttcaaagctcaatcatttatcgatcaattttgtcatcgatt
gtttatcgattttATAGATCAattatacttcgattaaattaagtatcgat
taaaaatcgatcggctatcgatcacagcttttgatcAATTACATatcaat
caaaaattgattaatcatcaatcaaatagttaatcgatcaactatcgatt
cgtgatcgattatttatcagattttagggtCGATTGCGTtctcgatttgg
ttcgactggttccatcgtcgattccgttcgattgagattgtctgccctgg
tgaaattcccttagaaagtatgcgaaacatatgcaaaaaggaaGTATTAa
tgtaaaacttacatgcataattggcattatattaaagtaatCTTGttgaa
gaaagataaaaaatttccttctcttgaaatctaaaaatttaaaacggtaa
ttcggccaccatttcaccgaacctccaaagtcatttgatttgagttaagg
aacggcatatttaaaaatacaccatttcactttcaattttacagtaagtg
aaaatacagggctcgaaataacgatatttaggtggtcggacacactgtcc
gatcaaaaattgatttgggtcggacacgtcctaaggcttttaaagtaaaa
tgggtcagacatgtccgattgatttttatgtggagtatacttcaagtcta
atacaagcttctgatagaattttacattgatcacgaagaagctaaacaaa
tgtcaattaaggtatgtgttcacctttcttgacacattctctttaattga
tcatatctttagaacaacaaatttttatatatcaaaagtatatattttct
gaaagccaataatattctctttctaatggtaaaagttacAGCTGaattaa
aaaactgggcaggatataattaaaatcttaagaattttaaccttaccttc
ttcaaagaagttaaagtcacccatagcttttgaattttgaaaaaataatc
tcgatactatgttcccaatagattgaactaaaaaagtgtcttgggatttt
ctttgggattgactttaactctttaaatcctaaattctgtaaaaatatcg
ataaaaagtaaatttaaatgtgattttttcagttatctgtatagtaaatt
gaggaaaaacaactcggttagaaataaaatcctaagacactttttaagtt
tgatcttttgtgAATCTCattaaaaagaatgaagtcgatatctaaatgct
atgggtgactttaacttcgttaaaagtagtatggtgtggtaaaatttcgt
ttttttctacatcaatttgaaatttNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCATTGAGCACAGTCATCTGT
GAGTATAACCTTTTTAAACTGAAATTCTATTACTACACATTTTAATGGAA
CTGCTGTAAACAACGTCACTTCTCAGAGCTTAATGAATTACAAAATTTTT
CTAgctattttcattgaaaagtatgAATTCTGGCCCAAATACTTTTAAAA
GGCTTTTTCGTGAAGGTGAATGCCTCTTTATTAAATTAAGAATTCTTAAC
AAATTGCAAGAGTTTATGCTTGTATTCtcacattcaatttttttttaaat
ttgaaaatctttgaagctgtgaaatcaaaattttaaatgtcCCTAGTAGT
AAAATCAATCATTGCCTTAATTTTAAGACtgacatttttaaacattttta
gaaCTGCTGATAGTGAAAGAACATTGACTGAGAGTGTAAGAACATTGACA
GCATTAAACTTGTCAACATATGANTAGAACTGCTAATAGTGAAAGAACAT
TGACTGAGAGTGAAAGAACATTGACAGCATTAAACTTGTCAACACATGAT
GAAGGAAAAATGAGTGTGTTTTTACAGAAATGGCAATGAATGTGTCAAGG
AAATTTATTCAGACAAATAGAGGGAATCAGAATCAAGTGATGAAGAAAAA
TCTGCACTAAATGTAGCATCCTTGATGCTGGACAAATAAGTG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_007849	XLOC_007849	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00014030-exon-sc0000180-1491911889:820..906	TCONS_00014030-exon-sc0000180-1491911889:820..906	Clytia hemisphaerica	exon
TCONS_00014030-exon-sc0000180-1510915933:820..906	TCONS_00014030-exon-sc0000180-1510915933:820..906	Clytia hemisphaerica	exon
TCONS_00014030-exon-sc0000180-1575043694:820..906	TCONS_00014030-exon-sc0000180-1575043694:820..906	Clytia hemisphaerica	exon
TCONS_00014030-exon-sc0000180-1491911889:4821..4841	TCONS_00014030-exon-sc0000180-1491911889:4821..4841	Clytia hemisphaerica	exon
TCONS_00014030-exon-sc0000180-1510915933:4821..4841	TCONS_00014030-exon-sc0000180-1510915933:4821..4841	Clytia hemisphaerica	exon
TCONS_00014030-exon-sc0000180-1575043694:4821..4841	TCONS_00014030-exon-sc0000180-1575043694:4821..4841	Clytia hemisphaerica	exon
TCONS_00014030-exon-sc0000180-1491911889:4918..5111	TCONS_00014030-exon-sc0000180-1491911889:4918..5111	Clytia hemisphaerica	exon
TCONS_00014030-exon-sc0000180-1510915933:4918..5111	TCONS_00014030-exon-sc0000180-1510915933:4918..5111	Clytia hemisphaerica	exon
TCONS_00014030-exon-sc0000180-1575043694:4918..5111	TCONS_00014030-exon-sc0000180-1575043694:4918..5111	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000180	supercontig	sc0000180:820..5111 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	1.63531	1.87742	2.3328	0.308399	0	1.82854	0	0.628154	0	0	0	0	0	0	0.665808	0	0	0	1.07598	0.649374	0.485609	0.588325

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00014030 vs. Swiss-Prot (Human)

BLAST of TCONS_00014030 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00014030 (transcript) - C. hemisphaerica