TCONS_00014052 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014052
Unique NameTCONS_00014052
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1621

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014052 ID=TCONS_00014052|Name=TCONS_00014052|organism=Clytia hemisphaerica|type=transcript|length=1621bp
TTTTTagagcaaagaaaaataaagtttgtGTTTAAAATCTTTCGActgta
aaaagttttgaaattttaaaaattgaaaatgttaaaatttccgataatgt
ttttttggaaatgataCAGCATATTTCAACGGATGGAATGAATTTAGTTA
GTTTTTCGCGTTTAAAATTCTTTCAGCTGAGTATATAACTCAAAATGCAA
ACTACTTCAAATGAACATTCTACTGTAACAAGCAGAAACGCACCAGACAG
AGGGAAGGGCATTTTGTTCAAACTTCGAGTGACAAGTGTTCATGTTTTGT
ACGTGGTTTACGCAACATTGTTATGGTTGAAACTGATTGATTGGGGGGTT
GAAACAGGACATAAGAAATTGACATTACAAATATGTATGATAGTATGGAT
GGTTGTGTTTGTCTTGTGTCATTGCATTACAGCACTTGTTGGGCTGCAGC
AAAAtcCACATCAAATCCTCCAGCAGACCTGGTTAAACTTCCCTCTGTTG
TTGTTCGTTGTTTTCACCCTTCCACCTTACGGATTCACTTTGCAATACAT
GTATGAAGTGATGGATAAAAATGCTATTCAAAATGTAGCTTCCTATAACA
ATATCACCAATTGTAAAACAACGGATCAAGATATCGCAACACACGAGCCA
ATGTACGATTTCATACTTCTGCAACTCGTTATGCTAGTCATGTTATTAAC
TTTTGTTATCTACCCTCTACCACAGAGAGCATATACTTATTCAGAATATA
TTGCAGTCGGAATGGAATTTATCAACGCTTTTGATACGATGGATATGATT
GGTGACCTCGTTTTCGTGCGTAACTATGGTTACGGTTGGGTGACAGTTTA
TTATCTCTCACTAGGGGTAACAGCTGTTCTTATTGCATTCCCAGTCAAAA
TCGAGGAAGAGGATATATTTTGGTCGTCAAGGCAGCCCCTTGTTGTTACA
TCCGAATCGGGGATACTCGGGCAATCTAAATCAATGATTTCCATTCTTGA
CGCTCCTGTTACTTTTGAGACACCATTTGCAGTGCAAACTGTTCATAAAC
GATCTAGCGTTACAAGCATGGACGTGACCAATTctaaacaatcaaatcaa
cagAAAATGAATACAATCACGCCTAGCTCCACAGCCTCTCCCATTATAGA
CAGTCCAACGGATGATACATTTGTTACCACTAGGATTAAAAGAACAACAC
TCGATCGTTACGCCATGCAGTTTTCAATGACACGGAAGAAAATCATAAAA
GCATCTTTAACAATGATTTTCACCGATGCCTTTTTCGCAATGTTAAGATT
CAAGATCATGGTCGCAGAACAGTCAGCTGTTCATGGCTTTAACATGTTTG
TTAAAAAtgtgattttgttttgtttggacTTCTCGTATCTTTTGTATCAT
GCTCACAGCATGATAGTTGCCAAATTATCTTTACTGTTGAACAATTAGAT
AATAGTCTTTTGTAACTATAAAAAAATAAGAGACGAAAAtgctatacacg
ttttttttttaagaaacacacttttaagaaacatgaggctcagaatgcct
aaaaaataagaaacgtctaaaaaacatgctgaggctgagaatgagaaaat
aacattttttaattcgttttt
Run BLAST on NCBI

protein sequence of TCONS_00014052-protein

>TCONS_00014052-protein ID=TCONS_00014052-protein|Name=TCONS_00014052-protein|organism=Clytia hemisphaerica|type=polypeptide|length=417bp
MQTTSNEHSTVTSRNAPDRGKGILFKLRVTSVHVLYVVYATLLWLKLIDW
GVETGHKKLTLQICMIVWMVVFVLCHCITALVGLQQNPHQILQQTWLNFP
LLLFVVFTLPPYGFTLQYMYEVMDKNAIQNVASYNNITNCKTTDQDIATH
EPMYDFILLQLVMLVMLLTFVIYPLPQRAYTYSEYIAVGMEFINAFDTMD
MIGDLVFVRNYGYGWVTVYYLSLGVTAVLIAFPVKIEEEDIFWSSRQPLV
VTSESGILGQSKSMISILDAPVTFETPFAVQTVHKRSSVTSMDVTNSKQS
NQQKMNTITPSSTASPIIDSPTDDTFVTTRIKRTTLDRYAMQFSMTRKKI
IKASLTMIFTDAFFAMLRFKIMVAEQSAVHGFNMFVKNVILFCLDFSYLL
YHAHSMIVAKLSLLLNN
Run BLAST on NCBI

transcript from alignment at sc0000180:12265..14966-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014052 ID=TCONS_00014052|Name=TCONS_00014052|organism=Clytia hemisphaerica|type=transcript|length=2702bp|location=Sequence derived from alignment at sc0000180:12265..14966- (Clytia hemisphaerica)
TTTTTAGAGCAAAGAAAAATAAAGTTTGTGTTTAAAATCTTTCGACTGTA
AAAAGTTTTGAAATTTTAAAAATTGAAAATGTTAAAATTTCCGATAATGT
TTTTTTGGAAATGATACAGCATATTTCAACGGATGGAATGAATTTAGTTA
GTTTTTCGCGTTTAAAATTCTTTCAGCTGAGTATATAACTCAAAATGCAA
ACTACTTCAAATGAACATTCTACTGTAACAAGCAGAAACGCACCAGACAG
AGGGAAGGGCATTTTGTTCAAACTTCGAGTGACAAGTGTTCATGTTTTGT
ACGTGGTTTACGCAACATTGTTATGGTTGAAACTGATTGATTGGGGGGTT
GAAACAGGACATAAGAAATTGACATTACAAATATGTATGATAGTATGGAT
GGTTGTGTTTGTCTTGTGTCATTGCATTACAGCACTTGTTGGGCTGCAGC
AAAAGTAAGTGCCATTTGTTACATGCCCCTGTATCAGTTGCCTGTCAGAA
TCAAGTTTTGATGTTTAAATTATTTGAAGAAAACCTCCAGATACATTAGC
CTAGAAATCTAAGCCAGATTGATTCAGTCACTTGGTAAAATCTGATGGTA
AATTGTGACTGAATATCTGTTTTTTCAAGGCAAACTTGAAATTCCTTACA
TCATGAAAATCATTAAAGCGCTGATAACGCTAAATTGCCTTCAGTCGTAT
CTTGGCCTTGTAAAAACTGGCTTGGTTAACTAGGCTACAGATACATCAGA
AACCCGTGTCTCATAACGATGCATTAGCTTCCCCCAGTGTTTAAAATTCA
ACCGTTTCTCTACATCCCTGTATCAGATTCCCAATTGTATCAATTAGTTA
TCGAATCCAACCATTTCTTAACACACCCACGTTACTAAAAGACTCAGAGT
ATTTAATCAAATTCAACATATTTATCAACAACCCTGTATCAGTGACATCT
CCAACTTATCTTGGTTTTTGCAATAGTAAATGGCTGAAAACTGATAAAAA
TTTATCTTTCCACTTGATCTTAAAGGTATAATCAGATAATAGAAGACATT
TTGTCTGTAGATTCCTACAATCGTCCTGTGCTAAACCTCGAAATCCTTTT
CCTTAACTCTTTTCCAAAGAGGTTGCTTTTTCAAAGAATTTTGACGTATA
CTGCTACCTAGTTTGTATTTCTAACACTTTCTTTTTTTATAGTCCACATC
AAATCCTCCAGCAGACCTGGTTAAACTTCCCTCTGTTGTTGTTCGTTGTT
TTCACCCTTCCACCTTACGGATTCACTTTGCAATACATGTATGAAGTGAT
GGATAAAAATGCTATTCAAAATGTAAGGAAAGATGTATCACCCTCCTTCA
ACGTTTATCAAATGCTTTGTCTGCTGTTGTTATATCTAAACGATTCTTAC
TCGTTATACACTACCTGTAGTTTTGTAGAGTACTGCAATTCATATCATGG
CATGCCTAGCAGAGGATAAGGTTTTTCTACCTTTAAAATCTTCCTTGAGG
GTTGGAAAAAATGGAATTTTCGATAGAAAAAAGTAAAATTTAAAGCATTT
TTCTCAATGTTTCTCTCTTTCTAAGGCTTAAAGTGCCAGGGATCAGGAAA
TCATCATCAACCCAAAAAAATAGTTCCCTCATCTGACACGATGTCATTCT
CCTCGATCTTTTTAGGTAGCTTCCTATAACAATATCACCAATTGTAAAAC
AACGGATCAAGATATCGCAACACACGAGCCAATGTACGATTTCATACTTC
TGCAACTCGTTATGCTAGTCATGTTATTAACTTTTGTTATCTACCCTCTA
CCACAGAGAGCATATACTTATTCAGAATATATTGCAGTCGGAATGGAATT
TATCAACGCTTTTGATACGATGGATATGATTGGTGACCTCGTTTTCGTGC
GTAACTATGGTTACGGTTGGGTGACAGTTTATTATCTCTCACTAGGGGTA
ACAGCTGTTCTTATTGCATTCCCAGTCAAAATCGAGGAAGAGGATATATT
TTGGTCGTCAAGGCAGCCCCTTGTTGTTACATCCGAATCGGGGATACTCG
GGCAATCTAAATCAATGATTTCCATTCTTGACGCTCCTGTTACTTTTGAG
ACACCATTTGCAGTGCAAACTGTTCATAAACGATCTAGCGTTACAAGCAT
GGACGTGACCAATTCTAAACAATCAAATCAACAGAAAATGAATACAATCA
CGCCTAGCTCCACAGCCTCTCCCATTATAGACAGTCCAACGGATGATACA
TTTGTTACCACTAGGATTAAAAGAACAACACTCGATCGTTACGCCATGCA
GTTTTCAATGACACGGAAGAAAATCATAAAAGCATCTTTAACAATGATTT
TCACCGATGCCTTTTTCGCAATGTTAAGATTCAAGATCATGGTCGCAGAA
CAGTCAGCTGTTCATGGCTTTAACATGTTTGTTAAAAATGTGATTTTGTT
TTGTTTGGACTTCTCGTATCTTTTGTATCATGCTCACAGCATGATAGTTG
CCAAATTATCTTTACTGTTGAACAATTAGATAATAGTCTTTTGTAACTAT
AAAAAAATAAGAGACGAAAATGCTATACACGTTTTTTTTTTAAGAAACAC
ACTTTTAAGAAACATGAGGCTCAGAATGCCTAAAAAATAAGAAACGTCTA
AAAAACATGCTGAGGCTGAGAATGAGAAAATAACATTTTTTAATTCGTTT
TT

Coding sequence (CDS) from alignment at sc0000180:12265..14966-

>TCONS_00014052 ID=TCONS_00014052|Name=TCONS_00014052|organism=Clytia hemisphaerica|type=CDS|length=3762bp|location=Sequence derived from alignment at sc0000180:12265..14966- (Clytia hemisphaerica)
GTAGCTTCCTATAACAATATCACCAATTGTAAAACAACGGATCAAGATAT
CGCAACACACGAGCCAATGTACGATTTCATACTTCTGCAACTCGTTATGC
TAGTCATGTTATTAACTTTTGTTATCTACCCTCTACCACAGAGAGCATAT
ACTTATTCAGAATATATTGCAGTCGGAATGGAATTTATCAACGCTTTTGA
TACGATGGATATGATTGGTGACCTCGTTTTCGTGCGTAACTATGGTTACG
GTTGGGTGACAGTTTATTATCTCTCACTAGGGGTAACAGCTGTTCTTATT
GCATTCCCAGTCAAAATCGAGGAAGAGGATATATTTTGGTCGTCAAGGCA
GCCCCTTGTTGTTACATCCGAATCGGGGATACTCGGGCAATCTAAATCAA
TGATTTCCATTCTTGACGCTCCTGTTACTTTTGAGACACCATTTGCAGTG
CAAACTGTTCATAAACGATCTAGCGTTACAAGCATGGACGTGACCAATTC
TAAACAATCAAATCAACAGAAAATGAATACAATCACGCCTAGCTCCACAG
CCTCTCCCATTATAGACAGTCCAACGGATGATACATTTGTTACCACTAGG
ATTAAAAGAACAACACTCGATCGTTACGCCATGCAGTTTTCAATGACACG
GAAGAAAATCATAAAAGCATCTTTAACAATGATTTTCACCGATGCCTTTT
TCGCAATGTTAAGATTCAAGATCATGGTCGCAGAACAGTCAGCTGTTCAT
GGCTTTAACATGTTTGTTAAAAATGTGATTTTGTTTTGTTTGGACTTCTC
GTATCTTTTGTATCATGCTCACAGCATGATAGTTGCCAAATTATCTTTAC
TGTTGAACAATTAGTCCACATCAAATCCTCCAGCAGACCTGGTTAAACTT
CCCTCTGTTGTTGTTCGTTGTTTTCACCCTTCCACCTTACGGATTCACTT
TGCAATACATGTATGAAGTGATGGATAAAAATGCTATTCAAAATATGCAA
ACTACTTCAAATGAACATTCTACTGTAACAAGCAGAAACGCACCAGACAG
AGGGAAGGGCATTTTGTTCAAACTTCGAGTGACAAGTGTTCATGTTTTGT
ACGTGGTTTACGCAACATTGTTATGGTTGAAACTGATTGATTGGGGGGTT
GAAACAGGACATAAGAAATTGACATTACAAATATGTATGATAGTATGGAT
GGTTGTGTTTGTCTTGTGTCATTGCATTACAGCACTTGTTGGGCTGCAGC
AAAAGTAGCTTCCTATAACAATATCACCAATTGTAAAACAACGGATCAAG
ATATCGCAACACACGAGCCAATGTACGATTTCATACTTCTGCAACTCGTT
ATGCTAGTCATGTTATTAACTTTTGTTATCTACCCTCTACCACAGAGAGC
ATATACTTATTCAGAATATATTGCAGTCGGAATGGAATTTATCAACGCTT
TTGATACGATGGATATGATTGGTGACCTCGTTTTCGTGCGTAACTATGGT
TACGGTTGGGTGACAGTTTATTATCTCTCACTAGGGGTAACAGCTGTTCT
TATTGCATTCCCAGTCAAAATCGAGGAAGAGGATATATTTTGGTCGTCAA
GGCAGCCCCTTGTTGTTACATCCGAATCGGGGATACTCGGGCAATCTAAA
TCAATGATTTCCATTCTTGACGCTCCTGTTACTTTTGAGACACCATTTGC
AGTGCAAACTGTTCATAAACGATCTAGCGTTACAAGCATGGACGTGACCA
ATTCTAAACAATCAAATCAACAGAAAATGAATACAATCACGCCTAGCTCC
ACAGCCTCTCCCATTATAGACAGTCCAACGGATGATACATTTGTTACCAC
TAGGATTAAAAGAACAACACTCGATCGTTACGCCATGCAGTTTTCAATGA
CACGGAAGAAAATCATAAAAGCATCTTTAACAATGATTTTCACCGATGCC
TTTTTCGCAATGTTAAGATTCAAGATCATGGTCGCAGAACAGTCAGCTGT
TCATGGCTTTAACATGTTTGTTAAAAATGTGATTTTGTTTTGTTTGGACT
TCTCGTATCTTTTGTATCATGCTCACAGCATGATAGTTGCCAAATTATCT
TTACTGTTGAACAATTAGTCCACATCAAATCCTCCAGCAGACCTGGTTAA
ACTTCCCTCTGTTGTTGTTCGTTGTTTTCACCCTTCCACCTTACGGATTC
ACTTTGCAATACATGTATGAAGTGATGGATAAAAATGCTATTCAAAATAT
GCAAACTACTTCAAATGAACATTCTACTGTAACAAGCAGAAACGCACCAG
ACAGAGGGAAGGGCATTTTGTTCAAACTTCGAGTGACAAGTGTTCATGTT
TTGTACGTGGTTTACGCAACATTGTTATGGTTGAAACTGATTGATTGGGG
GGTTGAAACAGGACATAAGAAATTGACATTACAAATATGTATGATAGTAT
GGATGGTTGTGTTTGTCTTGTGTCATTGCATTACAGCACTTGTTGGGCTG
CAGCAAAAGTAGCTTCCTATAACAATATCACCAATTGTAAAACAACGGAT
CAAGATATCGCAACACACGAGCCAATGTACGATTTCATACTTCTGCAACT
CGTTATGCTAGTCATGTTATTAACTTTTGTTATCTACCCTCTACCACAGA
GAGCATATACTTATTCAGAATATATTGCAGTCGGAATGGAATTTATCAAC
GCTTTTGATACGATGGATATGATTGGTGACCTCGTTTTCGTGCGTAACTA
TGGTTACGGTTGGGTGACAGTTTATTATCTCTCACTAGGGGTAACAGCTG
TTCTTATTGCATTCCCAGTCAAAATCGAGGAAGAGGATATATTTTGGTCG
TCAAGGCAGCCCCTTGTTGTTACATCCGAATCGGGGATACTCGGGCAATC
TAAATCAATGATTTCCATTCTTGACGCTCCTGTTACTTTTGAGACACCAT
TTGCAGTGCAAACTGTTCATAAACGATCTAGCGTTACAAGCATGGACGTG
ACCAATTCTAAACAATCAAATCAACAGAAAATGAATACAATCACGCCTAG
CTCCACAGCCTCTCCCATTATAGACAGTCCAACGGATGATACATTTGTTA
CCACTAGGATTAAAAGAACAACACTCGATCGTTACGCCATGCAGTTTTCA
ATGACACGGAAGAAAATCATAAAAGCATCTTTAACAATGATTTTCACCGA
TGCCTTTTTCGCAATGTTAAGATTCAAGATCATGGTCGCAGAACAGTCAG
CTGTTCATGGCTTTAACATGTTTGTTAAAAATGTGATTTTGTTTTGTTTG
GACTTCTCGTATCTTTTGTATCATGCTCACAGCATGATAGTTGCCAAATT
ATCTTTACTGTTGAACAATTAGTCCACATCAAATCCTCCAGCAGACCTGG
TTAAACTTCCCTCTGTTGTTGTTCGTTGTTTTCACCCTTCCACCTTACGG
ATTCACTTTGCAATACATGTATGAAGTGATGGATAAAAATGCTATTCAAA
ATATGCAAACTACTTCAAATGAACATTCTACTGTAACAAGCAGAAACGCA
CCAGACAGAGGGAAGGGCATTTTGTTCAAACTTCGAGTGACAAGTGTTCA
TGTTTTGTACGTGGTTTACGCAACATTGTTATGGTTGAAACTGATTGATT
GGGGGGTTGAAACAGGACATAAGAAATTGACATTACAAATATGTATGATA
GTATGGATGGTTGTGTTTGTCTTGTGTCATTGCATTACAGCACTTGTTGG
GCTGCAGCAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007862XLOC_007862Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014052-proteinTCONS_00014052-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014052-exon-sc0000180-1575043694:14513..14966TCONS_00014052-exon-sc0000180-1575043694:14513..14966Clytia hemisphaericaexon
TCONS_00014052-exon-sc0000180-1575043694:13645..13774TCONS_00014052-exon-sc0000180-1575043694:13645..13774Clytia hemisphaericaexon
TCONS_00014052-exon-sc0000180-1575043694:12265..13301TCONS_00014052-exon-sc0000180-1575043694:12265..13301Clytia hemisphaericaexon
TCONS_00014052-exon-sc0000180-1510915933:14513..14966TCONS_00014052-exon-sc0000180-1510915933:14513..14966Clytia hemisphaericaexon
TCONS_00014052-exon-sc0000180-1510915933:13645..13774TCONS_00014052-exon-sc0000180-1510915933:13645..13774Clytia hemisphaericaexon
TCONS_00014052-exon-sc0000180-1510915933:12265..13301TCONS_00014052-exon-sc0000180-1510915933:12265..13301Clytia hemisphaericaexon
TCONS_00014052-exon-sc0000180-1491911889:14513..14966TCONS_00014052-exon-sc0000180-1491911889:14513..14966Clytia hemisphaericaexon
TCONS_00014052-exon-sc0000180-1491911889:13645..13774TCONS_00014052-exon-sc0000180-1491911889:13645..13774Clytia hemisphaericaexon
TCONS_00014052-exon-sc0000180-1491911889:12265..13301TCONS_00014052-exon-sc0000180-1491911889:12265..13301Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000180supercontigsc0000180:12265..14966 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0762888	0.024905	0.115103	0.0849245	0.169811	0.161221	0.323842	0.424369	1.70036	0.897669	0.486646	1.68342	2.0282	1.8117	0.430923	0.814837	1.70292	0.910587	3.60724	3.89268	2.8867	3.43703	1.91829	1.96115	2.13659	2.71196	0.105291	0.375273	1.36682	1.04065
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014052 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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