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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014113 ID=TCONS_00014113|Name=TCONS_00014113|organism=Clytia hemisphaerica|type=transcript|length=724bp
CAGACGAATTGGTAGAACCCAAATTATGTGAAATGTTCAATCCACCATTC
GGATGTTGTTGGGATAACCGCACTGTTGCTTTAGGTCCAAACGGTCAAGG
ATGCCCAGCTTGCAAGAACAAGAAGAAAAGTTGTCGCAAATGGAAAGATC
AATGCGGGTCAGAATTAGTCAAAGATATTTGCCCTGAAACGTGTGGAATG
TGTCCTAAACCGAAAGTAGCAAAATGTCAAGATGAGCCATCACAAAAAGA
TTATTGTCCACTCTACGCCCGTTTCTCGCTTTGTAAAAGTAAACAGATAC
GAAAGAACTGCCGACACTCGTGCGGTGCATGCGACGAATAATGAACCAAA
AACGaaccaaaaacgaaagtgaaagtggtcTTGAGGTGACGTTTAGATGA
AATCTTCTAATTTGTTTAGATGACGTAATATGTGACGTAATGATGACAAA
TCGTGCGGTCGATGGCGTACATCAACGCCTGACCGCGCGATAATTCTTTA
ATGGATGTTGTAAAACGAATGCGTACCCATTTTATGGGATCGCTAATCtt
ctaaatgttttttgatgacaacacgcaaaaaattaacatttttggtaaaa
ttttgcGAACAGATATATTTGTTGTGTTGAATGTTAATTAATTGTTCTTC
GAAACGAGGTTAGTAAGCCTTTCCATTGATACAAAATATGGTATTAGAAA
ATTGGTGACACGTGATTTAATATT Run BLAST on NCBI protein sequence of TCONS_00014113-protein >TCONS_00014113-protein ID=TCONS_00014113-protein|Name=TCONS_00014113-protein|organism=Clytia hemisphaerica|type=polypeptide|length=112bp
DELVEPKLCEMFNPPFGCCWDNRTVALGPNGQGCPACKNKKKSCRKWKDQ
CGSELVKDICPETCGMCPKPKVAKCQDEPSQKDYCPLYARFSLCKSKQIR
KNCRHSCGACDE Run BLAST on NCBI transcript from alignment at sc0000181:340485..342104+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014113 ID=TCONS_00014113|Name=TCONS_00014113|organism=Clytia hemisphaerica|type=transcript|length=1620bp|location=Sequence derived from alignment at sc0000181:340485..342104+ (Clytia hemisphaerica)
CAGACGAATTGGTAGAACCCAAATTATGTGAAATGTTCAATCCACCATTC
GGATGTTGTTGGGATAACCGCACTGTTGCTTTAGGTCCAAACGGTCAAGG
ATGCCCAGGTAAAGGATTGAATCTAATAAATTTCAATAATATTGGGAGGA
GATTTACGCATTTAAATGGCGTCGATAACTTTACCGCAAATTAACTTTTC
GTGATTTCTCGTTTGTCCTAAAATACAAAAGTATTTATAGACGAGGGAGG
GCTGTTATAGTAGGAAGTCATTTGCTGCGCTGCCTTTTAATGGGAGGGGC
TTTTCTAAAATTGGATTGTTTGTGGTCTAAAATGTGCTGACAAAGAGATT
ATATATCTTTTGATCTCTGAAAAAGATTGTTAGTTTGGTATagtatttct
taaattttatgtATGTTGCTTTCCCTATGACGGAGACGATTAGCTTTTAA
TTTGTAATGTCTTTATCCTGACTGATAAAGGAGGACGGTTTTTTTGCGGT
TCAAAACGGCAGGTTGttccaaatcgtttcagtcattCCGCCGTTCTCAA
AAGGGTAGATAAACTCTCTCTCTAATGACCTGGAGATTTAAGATTTAATC
CAGAGAAACCGGTCCATTGTTTCTTTTAACAATCCATTAAAAATGATGGT
ACCGTTATATATTTAATCTTTATTCGGGGGAAATCAAAACATAATAGCca
cattctttttcaccgtccaacataATCTTTATTCGGTTACAGCTTGCAAG
AACAAGAAGAAAAGTTGTCGCAAATGGAAAGATCAATGCGGGTCAGAATT
AGTCAAAGATATTTGCCCTGAAACGTGTGGAATGTGTCGTaagtcaatta
tttttttgtgtaaACTTTTTTGGGGATTTCTAATTATCACAATAATCTTC
ACAAAAGCCGAAAAGCTCCTCCTTGGATAAATTGCGTTGGCCATATTTCT
GATCAAATTACTGAATATTGTATGTGTTGATTTACCTAGCTTGTGAAAAC
CTTTCCCGGAAAATTCAATTAGTATTAGAAATCCTCTAATGATGGTAATG
AAAAATCTTTGttcacaaaaaataataattttattttcctttttcttcag
CTAAACCGAAAGTAGCAAAATGTCAAGATGAGCCATCACAAAAAGATTAT
TGTCCACTCTACGCCCGTTTCTCGCTTTGTAAAAGTAAACAGATACGAAA
GAACTGCCGACACTCGTGCGGTGCATGCGACGAATAATGAACCAAAAACG
aaccaaaaacgaaagtgaaagtggtcTTGAGGTGACGTTTAGATGAAATC
TTCTAATTTGTTTAGATGACGTAATATGTGACGTAATGATGACAAATCGT
GCGGTCGATGGCGTACATCAACGCCTGACCGCGCGATAATTCTTTAATGG
ATGTTGTAAAACGAATGCGTACCCATTTTATGGGATCGCTAATCttctaa
atgttttttgatgacaacacgcaaaaaattaacatttttggtaaaatttt
gcGAACAGATATATTTGTTGTGTTGAATGTTAATTAATTGTTCTTCGAAA
CGAGGTTAGTAAGCCTTTCCATTGATACAAAATATGGTATTAGAAAATTG
GTGACACGTGATTTAATATT Coding sequence (CDS) from alignment at sc0000181:340485..342104+ >TCONS_00014113 ID=TCONS_00014113|Name=TCONS_00014113|organism=Clytia hemisphaerica|type=CDS|length=1017bp|location=Sequence derived from alignment at sc0000181:340485..342104+ (Clytia hemisphaerica)
GACGAATTGGTAGAACCCAAATTATGTGAAATGTTCAATCCACCATTCGG
ATGTTGTTGGGATAACCGCACTGTTGCTTTAGGTCCAAACGGTCAAGGAT
GCCCAGCTTGCAAGAACAAGAAGAAAAGTTGTCGCAAATGGAAAGATCAA
TGCGGGTCAGAATTAGTCAAAGATATTTGCCCTGAAACGTGTGGAATGTG
TCCTAAACCGAAAGTAGCAAAATGTCAAGATGAGCCATCACAAAAAGATT
ATTGTCCACTCTACGCCCGTTTCTCGCTTTGTAAAAGTAAACAGATACGA
AAGAACTGCCGACACTCGTGCGGTGCATGCGACGAATAAGACGAATTGGT
AGAACCCAAATTATGTGAAATGTTCAATCCACCATTCGGATGTTGTTGGG
ATAACCGCACTGTTGCTTTAGGTCCAAACGGTCAAGGATGCCCAGCTTGC
AAGAACAAGAAGAAAAGTTGTCGCAAATGGAAAGATCAATGCGGGTCAGA
ATTAGTCAAAGATATTTGCCCTGAAACGTGTGGAATGTGTCCTAAACCGA
AAGTAGCAAAATGTCAAGATGAGCCATCACAAAAAGATTATTGTCCACTC
TACGCCCGTTTCTCGCTTTGTAAAAGTAAACAGATACGAAAGAACTGCCG
ACACTCGTGCGGTGCATGCGACGAATAAGACGAATTGGTAGAACCCAAAT
TATGTGAAATGTTCAATCCACCATTCGGATGTTGTTGGGATAACCGCACT
GTTGCTTTAGGTCCAAACGGTCAAGGATGCCCAGCTTGCAAGAACAAGAA
GAAAAGTTGTCGCAAATGGAAAGATCAATGCGGGTCAGAATTAGTCAAAG
ATATTTGCCCTGAAACGTGTGGAATGTGTCCTAAACCGAAAGTAGCAAAA
TGTCAAGATGAGCCATCACAAAAAGATTATTGTCCACTCTACGCCCGTTT
CTCGCTTTGTAAAAGTAAACAGATACGAAAGAACTGCCGACACTCGTGCG
GTGCATGCGACGAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014113-exon-sc0000181-1491911889:340485..340592 | TCONS_00014113-exon-sc0000181-1491911889:340485..340592 | Clytia hemisphaerica | exon |
| TCONS_00014113-exon-sc0000181-1510915933:340485..340592 | TCONS_00014113-exon-sc0000181-1510915933:340485..340592 | Clytia hemisphaerica | exon |
| TCONS_00014113-exon-sc0000181-1575043694:340485..340592 | TCONS_00014113-exon-sc0000181-1575043694:340485..340592 | Clytia hemisphaerica | exon |
| TCONS_00014113-exon-sc0000181-1491911889:341227..341322 | TCONS_00014113-exon-sc0000181-1491911889:341227..341322 | Clytia hemisphaerica | exon |
| TCONS_00014113-exon-sc0000181-1510915933:341227..341322 | TCONS_00014113-exon-sc0000181-1510915933:341227..341322 | Clytia hemisphaerica | exon |
| TCONS_00014113-exon-sc0000181-1575043694:341227..341322 | TCONS_00014113-exon-sc0000181-1575043694:341227..341322 | Clytia hemisphaerica | exon |
| TCONS_00014113-exon-sc0000181-1491911889:341585..342104 | TCONS_00014113-exon-sc0000181-1491911889:341585..342104 | Clytia hemisphaerica | exon |
| TCONS_00014113-exon-sc0000181-1510915933:341585..342104 | TCONS_00014113-exon-sc0000181-1510915933:341585..342104 | Clytia hemisphaerica | exon |
| TCONS_00014113-exon-sc0000181-1575043694:341585..342104 | TCONS_00014113-exon-sc0000181-1575043694:341585..342104 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000181 | supercontig | sc0000181:340485..342104 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR003582 | ShKT_dom |
Blast
The following BLAST results are available for this feature:
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