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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014170 ID=TCONS_00014170|Name=TCONS_00014170|organism=Clytia hemisphaerica|type=transcript|length=1493bp
GAATTTCTgacaaaaaacttcaaaacaaagtcaattGACGTGTGTGCCAG
CTGAGCGAGGACCAAAGAATTAGCGCGTCGGTCAGAATATTTCAGGCTAG
AAAAATGCACTTAGAGCTCTTTTCTAATTTTACCAGGGACTTCTTTTCGA
CTATTTAGAAttagaaataataaaaatgcGGTGTTGCCATATTTTGGGTG
TTTCGATTATTTTCATATTGAGTGTCGCTGCAGTAGGCCTACTGGTTGCT
AGTGGTGTGGCTTATGATGTGTTAATAGAGGATAGTGTAAATGGCACCTC
CAGTTCACGGGTAGGATTGTGGAGAAACTGTACAACAATGAATGGTATTG
AGATCTGTTCCGTTGATGATAATATTTTGGAATTTAAAAGTGAACCCAAC
ATGAGAAGAGATAAAGATATCTTGATCGTGATGGACATAGCAGCTGTTGC
AATCATTCTGATCGCCATCTTCCTCACACTCTGTGGTTTGGCTAAAAGTC
ATCGCTCAAAATGCGTCGAAATCACTGCATCACTCTTATTCATTTTAGCA
ACAATATGCATTCTGTTTATGGTTGTCTACTTAGAAGTTGAAATGATAAA
AGACTCTTCATTCAAGCGTGGTTGGGCTGTTTTTACTTTATACGGTGGTC
TAGCGGCAACACTCCTGACATCTGTCGAAGCTATAGTCTACGCTTTGTGT
TGTTATGATCCTTATNCACTCCTGACGTCTATCGAAGCTATAGTCTACGC
TCTATGTTGTTATGATCCTTACTTAGAAGGTATCGAGAAAAGTGACTCTT
TAGTTTTACGGTCGAGACCACCAAATTTGGAATACAATAGATCATATAAC
AACAATGCAATGGACACCTCTTATAACCCATACGCAGTTCCAACGAAGGA
TTATTGAACTACTTAAAGAGTAGTTCTTATTGCTGGATGACTggaataat
ttgttttggtggaTTATAGGAAAAACATGGAAACAAGTGTGTCGTACTTT
TTGTGAACATAGATCCCATCCGTCACATGAACCTTTTGTTGACATTCAGC
TAACGTTATCTCACGTTACGGGCGATATTggcgttagatgaacgtttttT
ACCTATTGTGTTGCCATAAACATGTAAAAGCAATACAATAAAAATATGAT
GTCGGACAACTTATATGAAATGCAGTTTCAAGAACCTATATTTTATCAGG
CAGCCAGCAGGTGCAATTTGCCTGTTCCAAATTCAGTTATGGGTCTATGG
AGCCTTTGAGTAAAAAGTCCGCCCATTTGTTGATTATTTtatatgtaaaa
tatttttatatttattttccaTAGCATTCTCTCACGTTTTCTAAACGTGG
AATATAATTTGGAAACCAAAAAAACCTTTCAACCCTAGAATCTATAAACG
TGTTACTGGGATAAACCTGTATTTTAGTCCGCACAGAAGTTGCAAAAACa
ttagagaaaattttgaaaactgctTGAGAGGATATCAACAAAC Run BLAST on NCBI protein sequence of TCONS_00014170-protein >TCONS_00014170-protein ID=TCONS_00014170-protein|Name=TCONS_00014170-protein|organism=Clytia hemisphaerica|type=polypeptide|length=243bp
MRCCHILGVSIIFILSVAAVGLLVASGVAYDVLIEDSVNGTSSSRVGLWR
NCTTMNGIEICSVDDNILEFKSEPNMRRDKDILIVMDIAAVAIILIAIFL
TLCGLAKSHRSKCVEITASLLFILATICILFMVVYLEVEMIKDSSFKRGW
AVFTLYGGLAATLLTSVEAIVYALCCYDPYXLLTSIEAIVYALCCYDPYL
EGIEKSDSLVLRSRPPNLEYNRSYNNNAMDTSYNPYAVPTKDY Run BLAST on NCBI transcript from alignment at sc0000183:4036..10150+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014170 ID=TCONS_00014170|Name=TCONS_00014170|organism=Clytia hemisphaerica|type=transcript|length=6115bp|location=Sequence derived from alignment at sc0000183:4036..10150+ (Clytia hemisphaerica)
GAATTTCTgacaaaaaacttcaaaacaaagtcaattGACGTGTGTGCCAG
CTGAGCGAGGACCAAAGAATTAGCGCGTCGGTCAGAATATTTCAGGCTAG
AAAAATGCACTTAGAGCTCTTTTCTAATTTTACCAGGGACTTCTTTTCGA
CTATTTAGAAttagaaataataaaaatgcGGTGTTGCCATATTTTGGGTG
TTTCGATTATTTTCATATTGAGTGTCGCTGCAGTAGGCCTACTGGTTGCT
AGTGGTGTGGCTTATGATGTGTTAATAGAGGATAGTGTAAATGGCACCTC
CAGTTCACGGGTAGGATTGTGGAGAAACTGTACAACAATGAATGGTATTG
AGATCTGTTCCGTTGATGATAATATTTTGGAATTTAAAAGTGAACCCAAC
ATGAGAAGAGGTAGGTTAAGACTGTCCAACacttcaaaaagtttcaaaga
ttacacaatttttattactttgacccctaaattgcttgaaattgagtaac
tccaggctcagagaaagaagaagaagtgTACAGGGTTCTTgtcaaaaaat
ggtaaatttagTTGTTTTGCGGTTATTGTCACCACATCAATCTGAATACT
CGAGACAATAGTTTAGACTTCAAGAATAGAGATTGAAACCATTGTGGCAA
ATCTTCCTTTTGCATCTTTTCAACTCTATATATCCTCTTGACcattacac
ccctgtctaaCAGCCCCGATGGTAGCCCATGGTACTCAGTGGGacaaaaa
ttcctattgaaatctcaatggggatagaaattcaaTTGTTCTAAGGTTAA
TAAACCAAAGAGGATGGTTTTAGAGTtcaatttctaaacattgaatttcg
aatggggatgaaatcaaagcaaATTTCCCATCGGGggcgaaatttttgcc
aaattttccagtggtccaacacgggtctgtgacacagatgTGTACCGATG
AACCCCACTattaaagtgaaaaatattttcataaagaagaaaacgaagca
aCAGTCTGAAATACTGTGCTTTTTTATATTTCACATTTCCTTGACAGAAA
GCTTTCGACATATTTTCATCACAGTGTAAAAAACTATTTGTCATAAAACA
ATCAGATTTGATATAATctcttaatttttgttttgattgacatttAATTA
AGAAACTGTTGGACTTAATTGGATCTATCTCATTAGCACAAACCACAAAT
TGAGAAATCAATCCTGTCATATACTGAACTAACCTCTCTGacatgaaatt
aatttttataaaatcaaagTGTACGGACATTTAAATCCCTCTATTAAGCA
ATGTCTATGACGTATAAAGGGAAGGTTTCTTTTAGTGAAGGGGGCCCTCA
ACCCACGGAGAAAATCTACCGAAAGATGGAAATTTTCCTCTTGAAAACTG
CACATAATAAAANTTGTCATAAAACAATCAGATTTGATATAATctcttaa
tttttgttttgattgacatttAATTAAGAAACTGTTGGACTTAATTGGAT
CTATTTCATTAGCACAAACCACAAATTGAGAAATCAATCCTGTCATATAC
TGAACTATCCTCTCTGacatgaaattaatttttataaaatcaaagTGTAC
GGACATTTAAATCCCTCTACTAAGCAATGTCTATGACGTATAAAGGGAAG
GTTTCTTTTAGTGAAGGGGGCCCTCAACCCACGGAGAAAATCTACCGAAA
GATGGAAATTTTCCTCTTGAAAACTGCACATAATAAAACCTGGTGCAGAC
TGGGATTAACACTAACGTTTTGATTGATAATTTAAAAACCCcatttttgg
ctgttttttttcttcacatCAACGGGTCACCTTACTTCTAGAGTCTGTAA
CTTTTGCtgattgatatatttttttgtgaaaatatttcaatagttgaaat
ataaaaaagcttCAAAGTGCCTCtttaccaaaaatgaagttaatAGCATC
ATCatgtcatcttcattttcaaaaaaaatgagatCATGATAATTTGTTCT
TATCGGCACAAAGGCAATATCAAGGCTAAGTAGTGCGATTTTCATTTTCT
CCTACTGCGCAGTTGAAAAACTATTTTCCCTTTTTATTTCATTCAGATAA
AGATATCTTGATCGTGATGGACATAGCAGCTGTTGCAATCATTCTGATCG
CCATCTTCCTCACACTCTGTGGTTTGGCTAAAAGTCATCGCTCAAAATGC
GTCGAAATCACTGCATCACTCTTATTCATTTTAGCAAGTAAGTTCGACTG
GAACAATCGCATGTAACACTTACAATCACTCTTTTTGAACAACCCATTCT
CAGATATCAACCCTAGAGGGCTGCTTCAAATGTCCAATTAAATTGTATGC
CATTACAAAACATTATCATCACATATATTTCAAATACGTGAAATCCTGAA
GTAGCTTCGGTATTGTTCTTGAATTTTTGTtggatatttttgatttttct
tcttattcTATTTCAGCAATATGCATTCTGTTTATGGTTGTCTACTTAGA
AGTTGAAATGATAAAAGACTCTTCATTCAAGCGAGGTTGGGCTGTTTTCA
CTTTATACGGTGGTCTAGCGGCAACACTCCTGACGTCTATCGAAGCTATA
GTCTACGCTCTATGTTGTTATGATCCTTACTTAGAAGGTATCGAGAAAAG
TGACTCTTTAGTTTTACGGTCGAGACCACCAAATTTGGAATACAATAGAT
CATATAACAACAATGCAATGGACACCTCTTATAACCCGTACGCAGTTCCA
ACCAAGGATTATTGAACTTCATCTAAAGAGCCGTTCTTATCGTTTGAAAG
ACTGGAATACTTTGTCTTGGTGAATTATGGGAAGAGCATGGAAAAAAGTG
TGTTGTATTACTTGAACATAGATCCCCTAACATTCAACAGTGGCGTTACA
TGAACGTTTTTTATCTATTGTGTCACCTGTGATAGTCAATGGAGGAGCAA
TACAATAGAAATATGATGccagacatttaaaaaaatgaatgtTTCAAGAA
TCTATATTTCGCCAAGCAGTCAGCAGGTGTAATTTACGCCTTCCAAATTA
AGTTAAAAGTCTATGGAGCCTTTGGAGTGAAAAGTCCAGCTCATTTGTTG
ATTATTTtatatgtaaaatatttttatatttattgtcCATAGCATTCTCT
CACGTTTTCTAAACGTGGAATATAATTTGGAAACCAAAAAAACCTTTCAA
CCCTAGAATCTATAAACGTGTTACTGGGATAAACCTGTATTTTAGTCCGC
ACAGAAGTTGCAAAAACattagagaaaattttgaaaactgctTGAGAGGA
TATCAACAAACGCCAAATCAACCTCAGTAACAATATCAATCTAGTGTGTC
ATACTTTTGGGGGATGACCAGGGAGTCATATTAAGCATGTTGTCTCTAAT
CACACAAGAAAAATACATTATCCAGTTTAATCCTCGTACCCCGGGACATT
TGATTCCATATGAATCTATTGATTTTGaagataaatttttgaaaatcaat
ttcttctttgatCACAATATAAAGTggtatcaaaatcttttttcttatac
aaaattattcaaaatgttCATATTAAAGTTAGGGTTAGTTTAATCggata
attttccaaaatcattAATCAATATTCCTTCCTGGACGAGTCAGAAAGAG
GATGGGGCAAGGgttagttttgtttttttacgtACATAAATTATCATATC
NTTCAACTCTATATATCCTCTTGACcattacacccctgtctaaCAGCCCC
GATGGTAGCCCATGGTACTCAGTGGGacaaaaattcctattgaaatctca
atggggatagaaattcaaTTGTTCTAAGGTTAATAAACCAAAGAGGATGG
TTTTAGAGTtcaatttctaaacattgaatttcgaatggggatgaaatcaa
agcaaATTTCCCATCGGGggcgaaatttttgccaaattttccagtggtcc
aacacgggtctgtgacacagatgTGTACCGATGAACCCCACTattaaagt
gaaaaatattttcataaagaagaaaacgaagcaaCAGCCTGAAATACTGT
GCTTTTTTATATTTCACATTTCCTTGACAGAAAGCTTTTGACATATTTTC
ATCACAGTGTAAAAAACTATTTGTCATAAAACAATCAGATTTGATATAAT
ctcttaatttttgttttgattgacatttAATTAAGAAACTGTTGGACTTA
ATTGGATCTATCTCATTAGCACAAACCACAAATTGAGAAATCAATCCTGT
CATATACTGAACTAACCTCTCTGacatgaaattaatttttataaaatcaa
agTGTACGGACATTTAAATCCCTCTATTAAGCAATGTCTATGACGTATAA
AGGGAAGGTTTCTTTTAGTGAAGGGGGCCCTCAACCCACGGAGAAAATCT
ACCGAAAGATGGAAATTTTCCTCTTGAAAACTGCACATAATAAAACCTGG
TGCAGACTGGGATTAACACTAACGTTTTGATTGATAATTTAAAAACCCca
tttttggctgttttttttcttcacatCAACGGGTCACCTTACTTCTAGAG
TCTGTAACTTTTGCtgattgatatatttttttgtgaaaatatttcaatag
ttgaaatataaaaaagcttCAAAGTGCCTCtttaccaaaaatgaagttaa
tAGCATCATCatgtcatcttcattttcaaaaaaaatgagatCATGATAAT
TTGTTCTTATCGGCACAAAGGCAATATCAAGGCTAAGTAGTGCGATTTTC
ATTTTCTCCTACTGCGCAGTTGAAAAACTATTTTCCCTTTTTATTTCATT
CAGATAAAGATATCTTGATCGTGATGGACATAGCAGCTGTTGCAATCATT
CTGATCGCCATCTTCCTCACACTCTGTGGTTTGGCTAAAAGTCATCGCTC
AAAATGCGTCGAAATCACTGCATCACTCTTATTCATTTTAGCAAGTAAGT
TCGACTGGAACAATCGCATGTAACACTTACAATCACTCTTTTTGAACAAC
CCATTCTCAGATATCAACCCTAGAGGGCTGCTTCAAATGTCCAATTAAAT
TGTATGCCATTACAAAACATTATCATCACATATATTTCAAATACGTGAAA
TCCTGAAGTAGCTTCGGTATTGTTCTTGAATTTTTGTtggatatttttga
tttttcttcttattcTATTTCAGCAATATGCATTCTGTTTATGGTTGTCT
ACTTAGAAGTTGAAATGATAAAAGACTCTTCATTCAAGCGTGGTTGGGCT
GTTTTTACTTTATACGGTGGTCTAGCGGCAACACTCCTGACATCTGTCGA
AGCTATAGTCTACGCTTTGTGTTGTTATGATCCTTATNCACTCCTGACGT
CTATCGAAGCTATAGTCTACGCTCTATGTTGTTATGATCCTTACTTAGAA
GGTATCGAGAAAAGTGACTCTTTAGTTTTACGGTCGAGACCACCAAATTT
GGAATACAATAGATCATATAACAACAATGCAATGGACACCTCTTATAACC
CATACGCAGTTCCAACGAAGGATTATTGAACTACTTAAAGAGTAGTTCTT
ATTGCTGGATGACTggaataatttgttttggtggaTTATAGGAAAAACAT
GGAAACAAGTGTGTCGTACTTTTTGTGAACATAGATCCCATCCGTCACAT
GAACCTTTTGTTGACATTCAGCTAACGTTATCTCACGTTACGGGCGATAT
TggcgttagatgaacgtttttTACCTATTGTGTTGCCATAAACATGTAAA
AGCAATACAATAAAAATATGATGTCGGACAACTTATATGAAATGCAGTTT
CAAGAACCTATATTTTATCAGGCAGCCAGCAGGTGCAATTTGCCTGTTCC
AAATTCAGTTATGGGTCTATGGAGCCTTTGAGTAAAAAGTCCGCCCATTT
GTTGATTATTTtatatgtaaaatatttttatatttattttccaTAGCATT
CTCTCACGTTTTCTAAACGTGGAATATAATTTGGAAACCAAAAAAACCTT
TCAACCCTAGAATCTATAAACGTGTTACTGGGATAAACCTGTATTTTAGT
CCGCACAGAAGTTGCAAAAACattagagaaaattttgaaaactgctTGAG
AGGATATCAACAAAC Coding sequence (CDS) from alignment at sc0000183:4036..10150+ >TCONS_00014170 ID=TCONS_00014170|Name=TCONS_00014170|organism=Clytia hemisphaerica|type=CDS|length=2196bp|location=Sequence derived from alignment at sc0000183:4036..10150+ (Clytia hemisphaerica)
atgcGGTGTTGCCATATTTTGGGTGTTTCGATTATTTTCATATTGAGTGT
CGCTGCAGTAGGCCTACTGGTTGCTAGTGGTGTGGCTTATGATGTGTTAA
TAGAGGATAGTGTAAATGGCACCTCCAGTTCACGGGTAGGATTGTGGAGA
AACTGTACAACAATGAATGGTATTGAGATCTGTTCCGTTGATGATAATAT
TTTGGAATTTAAAAGTGAACCCAACATGAGAAGAGATAAAGATATCTTGA
TCGTGATGGACATAGCAGCTGTTGCAATCATTCTGATCGCCATCTTCCTC
ACACTCTGTGGTTTGGCTAAAAGTCATCGCTCAAAATGCGTCGAAATCAC
TGCATCACTCTTATTCATTTTAGCAACAATATGCATTCTGTTTATGGTTG
TCTACTTAGAAGTTGAAATGATAAAAGACTCTTCATTCAAGCGTGGTTGG
GCTGTTTTTACTTTATACGGTGGTCTAGCGGCAACACTCCTGACATCTGT
CGAAGCTATAGTCTACGCTTTGTGTTGTTATGATCCTTATNCACTCCTGA
CGTCTATCGAAGCTATAGTCTACGCTCTATGTTGTTATGATCCTTACTTA
GAAGGTATCGAGAAAAGTGACTCTTTAGTTTTACGGTCGAGACCACCAAA
TTTGGAATACAATAGATCATATAACAACAATGCAATGGACACCTCTTATA
ACCCATACGCAGTTCCAACGAAGGATTATTGAatgcGGTGTTGCCATATT
TTGGGTGTTTCGATTATTTTCATATTGAGTGTCGCTGCAGTAGGCCTACT
GGTTGCTAGTGGTGTGGCTTATGATGTGTTAATAGAGGATAGTGTAAATG
GCACCTCCAGTTCACGGGTAGGATTGTGGAGAAACTGTACAACAATGAAT
GGTATTGAGATCTGTTCCGTTGATGATAATATTTTGGAATTTAAAAGTGA
ACCCAACATGAGAAGAGATAAAGATATCTTGATCGTGATGGACATAGCAG
CTGTTGCAATCATTCTGATCGCCATCTTCCTCACACTCTGTGGTTTGGCT
AAAAGTCATCGCTCAAAATGCGTCGAAATCACTGCATCACTCTTATTCAT
TTTAGCAACAATATGCATTCTGTTTATGGTTGTCTACTTAGAAGTTGAAA
TGATAAAAGACTCTTCATTCAAGCGTGGTTGGGCTGTTTTTACTTTATAC
GGTGGTCTAGCGGCAACACTCCTGACATCTGTCGAAGCTATAGTCTACGC
TTTGTGTTGTTATGATCCTTATNCACTCCTGACGTCTATCGAAGCTATAG
TCTACGCTCTATGTTGTTATGATCCTTACTTAGAAGGTATCGAGAAAAGT
GACTCTTTAGTTTTACGGTCGAGACCACCAAATTTGGAATACAATAGATC
ATATAACAACAATGCAATGGACACCTCTTATAACCCATACGCAGTTCCAA
CGAAGGATTATTGAatgcGGTGTTGCCATATTTTGGGTGTTTCGATTATT
TTCATATTGAGTGTCGCTGCAGTAGGCCTACTGGTTGCTAGTGGTGTGGC
TTATGATGTGTTAATAGAGGATAGTGTAAATGGCACCTCCAGTTCACGGG
TAGGATTGTGGAGAAACTGTACAACAATGAATGGTATTGAGATCTGTTCC
GTTGATGATAATATTTTGGAATTTAAAAGTGAACCCAACATGAGAAGAGA
TAAAGATATCTTGATCGTGATGGACATAGCAGCTGTTGCAATCATTCTGA
TCGCCATCTTCCTCACACTCTGTGGTTTGGCTAAAAGTCATCGCTCAAAA
TGCGTCGAAATCACTGCATCACTCTTATTCATTTTAGCAACAATATGCAT
TCTGTTTATGGTTGTCTACTTAGAAGTTGAAATGATAAAAGACTCTTCAT
TCAAGCGTGGTTGGGCTGTTTTTACTTTATACGGTGGTCTAGCGGCAACA
CTCCTGACATCTGTCGAAGCTATAGTCTACGCTTTGTGTTGTTATGATCC
TTATNCACTCCTGACGTCTATCGAAGCTATAGTCTACGCTCTATGTTGTT
ATGATCCTTACTTAGAAGGTATCGAGAAAAGTGACTCTTTAGTTTTACGG
TCGAGACCACCAAATTTGGAATACAATAGATCATATAACAACAATGCAAT
GGACACCTCTTATAACCCATACGCAGTTCCAACGAAGGATTATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014170-exon-sc0000183-1491911889:4036..4445 | TCONS_00014170-exon-sc0000183-1491911889:4036..4445 | Clytia hemisphaerica | exon |
| TCONS_00014170-exon-sc0000183-1510915933:4036..4445 | TCONS_00014170-exon-sc0000183-1510915933:4036..4445 | Clytia hemisphaerica | exon |
| TCONS_00014170-exon-sc0000183-1575043694:4036..4445 | TCONS_00014170-exon-sc0000183-1575043694:4036..4445 | Clytia hemisphaerica | exon |
| TCONS_00014170-exon-sc0000183-1491911889:6132..6272 | TCONS_00014170-exon-sc0000183-1491911889:6132..6272 | Clytia hemisphaerica | exon |
| TCONS_00014170-exon-sc0000183-1510915933:6132..6272 | TCONS_00014170-exon-sc0000183-1510915933:6132..6272 | Clytia hemisphaerica | exon |
| TCONS_00014170-exon-sc0000183-1575043694:6132..6272 | TCONS_00014170-exon-sc0000183-1575043694:6132..6272 | Clytia hemisphaerica | exon |
| TCONS_00014170-exon-sc0000183-1491911889:9209..10150 | TCONS_00014170-exon-sc0000183-1491911889:9209..10150 | Clytia hemisphaerica | exon |
| TCONS_00014170-exon-sc0000183-1510915933:9209..10150 | TCONS_00014170-exon-sc0000183-1510915933:9209..10150 | Clytia hemisphaerica | exon |
| TCONS_00014170-exon-sc0000183-1575043694:9209..10150 | TCONS_00014170-exon-sc0000183-1575043694:9209..10150 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000183 | supercontig | sc0000183:4036..10150 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004031 | PMP22/EMP/MP20/Claudin |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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