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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014189 ID=TCONS_00014189|Name=TCONS_00014189|organism=Clytia hemisphaerica|type=transcript|length=921bp
AAAGGGATGTacaaaatctgcaaaatctgCAGAAAGTTTTTGATAAGGAA
ACGAGTGTTTTGACACACAGGACAGATAAATGTCATCCATTGCATGACAC
AAAAGTTACAATAATCTTGCTTGATTGAGAAAGGAAGAGTAATATGTTTT
AGTGGAGAAAAGATGATAACCACAAAAAATGATAACACAAAGAATGAGAA
TACAAGATAATAAACGGCGGAATGTTACCCATTATGTCCGTCGATTAAAG
TGCAAAGGGCGTCCGTCCTTGAACATCGTCATCAAACGTACCGAAAATAA
CAAACTACacgattttttataaaagctgtttttaaaattcattaaaaaaa
atgtacTGGTTATtgttaaaaagGAAAGAGTAATGAAACTTTTCGACGAA
TAACGCAAATTGGTTTGAACACAAGAAATTCGAAACTTACTGTCACAGTG
GCGTTTGTTAATTGCACGACATCCAGTAGAATGAAGAGTAAAAATGCCAC
AATGCTGGTCAGCGTACTGACGATCATCACCAAAACACGTGGATTGCCTG
TCATCTTGGTGGAATACTGAAAGATgaaagtatttaattttttaatatta
attattttttatttaattcttgGTAAATTATAATTTGCTTGATTGGAGTC
TTTTGTAATTAGTGTAATGCAGTGATATAGCTGCTATAATAAGAAAGTTA
TTACGTGATAATATGAGTTTAAACTGTATAGATTACAGTTACACTTTTCA
TTatctatttttctaaattttaaatgcTTGAGAGCTTTTATAATCGTCCA
AAATGTTCCAAAATTCTGAATATCTTATCTAGTATGGTCTAGAACCACTA
ATTTATCAATAAAATACTTTGGCGCATGTTTTTTAGGCCGAAAACTTCAA
ATATATTTCCGtctaacaatt Run BLAST on NCBI transcript from alignment at sc0000183:100872..103999+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014189 ID=TCONS_00014189|Name=TCONS_00014189|organism=Clytia hemisphaerica|type=transcript|length=3128bp|location=Sequence derived from alignment at sc0000183:100872..103999+ (Clytia hemisphaerica)
AAAGGGATGTacaaaatctgcaaaatctgCAGAAAGTTTTTGATAAGGAA
ACGAGTGTTTTGACACACAGGACAGATAAATGTCATCCATTGCATGACAC
AAAAGTTACAATAATCTTGCTTGATTGAGAAAGGAAGAGTAATATGTTTT
AGTGGAGAAAAGATGATAACCACAAAAAATGATAACACAAAGAATGAGAA
TACAAGATAATAAACGGCGGAATGTTACCCATTATGTCCGTCGATTAAAG
TGCAAAGGGCGTCCGTCCTTGAACATCGTCATCAAACGTACCGAAAATAA
CAAACTACacgattttttataaaagctgtttttaaaattcattaaaaaaa
atgtacTGGTTATtgttaaaaaggtaaaaacttttttgtattaTCAAACC
ATTTCTCGAGGAATTGAAGTTAGAAGTTTGATTATGGTTCTGAAGACTTC
AGGATTTCAACTATAGGGGGCCTATAAGGGGCCTGACCTTCAAAACAGAA
GCTTACAGTAATTGATATTTATTCATCCCTTCCTTAAAAACCTTCTCAGG
TAGCCACCAAGAGATTCAAGGTCAATTTATACTGTAAATGTGTTGATTTG
TATAAATGCTCCAACCTAGCAACCAAGGAGAATGTTCAAGCGAACTAAAG
GAGTgcaagtaaaaataaaattttatttgctgtaGCTTGAGAATAACATG
AGATTAAAAATGTTTGTCGTTGACATAAAGTAGGATGTTAAAGTCTATAT
ACTAATCAATCACTCGTGAgtgtttatttcaaatttacaaGTGCTGGTTT
GGATCAATTTAATCCGAAAGTATCACATCAGATtttttttggttagattt
tttCATCCGAGTGTGTTAGATGCTTTTATCTCCAGAAAAGCATATANNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaacgtactttcaa
cacaaaaagtttcagccttacactccaactaaacaatgagatagagggta
ccactttttattgtgggttttaaggggtatccactggtatatTATCTGTT
GGTATCTTTGTTTCTAAAGAGACGTAGAGTCCATTCACAAAGTGATCTTT
TTATAGAGAATGATTTTACATGTTTTGCtgacaatattttttctctttaa
GCAGGTTCTAGGCATATTGCCAAAATATACCCGGAAAAAAATGTGTTAGT
GTAAAAGTAAAACTTTGACAGTTTTAAAAACACGATTCAGGAAACAGGAA
AAATATGACTTGGATATCTAAAAATAAGGATGAACTTTTATCTTTGATGT
ATGGTACAACCGACTGGCTGAGAAACATAGCTGCTAATATATGTTCAACA
CTTATCGAACTAAAATTGCTTGTCTAGACAACATATCGTTGAGCTTATCT
GACAGTCTACaagtctttttataagaacatccaaaatcttgaaagctttt
aagcctaaaaaagttcttaacctgttcttattttcactatacTTTGAGAG
TGTTTTTCTACTATTTCCTAAAAAATAGAGTCCGGAATGCCTTACAAATG
TACTCAATTTGTTTACGATCATATTTTGGCTATAGATGCCTTATGCTctt
tatttagtttgttcttataaaaaaactaagTTCTGCCTGTTCTAATTTTA
ATTTAAAGGAAAGAGTAATGAAACTTTTCGACGAATAACGCAAATTGGTT
TGAACACAAGAAATTCGAAACTTACTGTGACAGTGGCCNTAAAAAAACTA
AGTTCTGCCTGTTCTAATTTTAATTTAAAGGAAAGAGTAATGAAACTTTT
CGACGAATAACGCAAATTGGTTTGAACACAAGAAATTCGAAACTTACTGT
CACAGTGGCGTTTGTTAATTGCACGACATCCAGTAGAATGAAGAGTAAAA
ATGCCACAATGCTGGTCAGCGTACTGACGATCATCACCAAAACACGTGGA
TTGCCTGTCATCTTGGTGGAATACTGAAAGATgaaagtatttaatttttt
aatattaattattttttatttaattcttgGTAAATTATAATTTGCTTGAT
TGGAGTCTTTTGTAATTAGTGTAATGCAGTGATATAGCTGCTATAATAAG
AAAGTTATTACGTGATAATATGAGTTTAAACTGTATAGATTACAGTTACA
CTTTTCATTatctatttttctaaattttaaatgcTTGAGAGCTTTTATAA
TCGTCCAAAATGTTCCAAAATTCTGAATATCTTATCTAGTATGGTCTAGA
ACCACTAATTTATCAATAAAATACTTTGGCGCATGTTTTTTAGGCCGAAA
ACTTCAAATATATTTCCGtctaacaatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014189-exon-sc0000183-1491911889:100872..101244 | TCONS_00014189-exon-sc0000183-1491911889:100872..101244 | Clytia hemisphaerica | exon |
| TCONS_00014189-exon-sc0000183-1510915933:100872..101244 | TCONS_00014189-exon-sc0000183-1510915933:100872..101244 | Clytia hemisphaerica | exon |
| TCONS_00014189-exon-sc0000183-1575043694:100872..101244 | TCONS_00014189-exon-sc0000183-1575043694:100872..101244 | Clytia hemisphaerica | exon |
| TCONS_00014189-exon-sc0000183-1491911889:103452..103999 | TCONS_00014189-exon-sc0000183-1491911889:103452..103999 | Clytia hemisphaerica | exon |
| TCONS_00014189-exon-sc0000183-1510915933:103452..103999 | TCONS_00014189-exon-sc0000183-1510915933:103452..103999 | Clytia hemisphaerica | exon |
| TCONS_00014189-exon-sc0000183-1575043694:103452..103999 | TCONS_00014189-exon-sc0000183-1575043694:103452..103999 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000183 | supercontig | sc0000183:100872..103999 + |
Blast
The following BLAST results are available for this feature:
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