TCONS_00014258 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014258
Unique NameTCONS_00014258
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length406

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014258 ID=TCONS_00014258|Name=TCONS_00014258|organism=Clytia hemisphaerica|type=transcript|length=406bp
TCTCCTGTAGCCTTCACAAGATCTTCTTGCATGTCAGTGACAGTGTATAA
AATCCAAGAACCTTTAGTATAAACATCCAACATATGTTTCAGATGCAGAT
CACGTTGCTGGTCATAATCAGCTGACCAGAATTGAAAcattttcttgcat
tttttaaattcttcttCCAGCCCAATGTAGTCATTTTCTGAAATTGTATC
CCTGCCTTCAAACAGTTTCAATATTTCTCTTGGTTGAGGATAGGTTAAAG
CAATAAAGGTGCTTTCGTCTCCATTTATGTTATCAGTGTAAATGTCAACA
ATCTTTCTGGTCATTGGGCTTGTCAATGTACTCATGATAGGGACCAAAAG
TTGTTCATTCTTTTCCAAAACTCTACGTCTCAATTTCTCCTTGTACTCTT
GTTGCC
Run BLAST on NCBI

protein sequence of TCONS_00014258-protein

>TCONS_00014258-protein ID=TCONS_00014258-protein|Name=TCONS_00014258-protein|organism=Clytia hemisphaerica|type=polypeptide|length=134bp
QQEYKEKLRRRVLEKNEQLLVPIMSTLTSPMTRKIVDIYTDNINGDESTF
IALTYPQPREILKLFEGRDTISENDYIGLEEEFKKCKKMFQFWSADYDQQ
RDLHLKHMLDVYTKGSWILYTVTDMQEDLVKATG
Run BLAST on NCBI

transcript from alignment at sc0000183:114496..114901

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014258 ID=TCONS_00014258|Name=TCONS_00014258|organism=Clytia hemisphaerica|type=transcript|length=406bp|location=Sequence derived from alignment at sc0000183:114496..114901 (Clytia hemisphaerica)
GGCAACAAGAGTACAAGGAGAAATTGAGACGTAGAGTTTTGGAAAAGAAT
GAACAACTTTTGGTCCCTATCATGAGTACATTGACAAGCCCAATGACCAG
AAAGATTGTTGACATTTACACTGATAACATAAATGGAGACGAAAGCACCT
TTATTGCTTTAACCTATCCTCAACCAAGAGAAATATTGAAACTGTTTGAA
GGCAGGGATACAATTTCAGAAAATGACTACATTGGGCTGGaagaagaatt
taaaaaatgcaagaaaatgTTTCAATTCTGGTCAGCTGATTATGACCAGC
AACGTGATCTGCATCTGAAACATATGTTGGATGTTTATACTAAAGGTTCT
TGGATTTTATACACTGTCACTGACATGCAAGAAGATCTTGTGAAGGCTAC
AGGAGA

Coding sequence (CDS) from alignment at sc0000183:114496..114901

>TCONS_00014258 ID=TCONS_00014258|Name=TCONS_00014258|organism=Clytia hemisphaerica|type=CDS|length=402bp|location=Sequence derived from alignment at sc0000183:114496..114901 (Clytia hemisphaerica)
CAACAAGAGTACAAGGAGAAATTGAGACGTAGAGTTTTGGAAAAGAATGA
ACAACTTTTGGTCCCTATCATGAGTACATTGACAAGCCCAATGACCAGAA
AGATTGTTGACATTTACACTGATAACATAAATGGAGACGAAAGCACCTTT
ATTGCTTTAACCTATCCTCAACCAAGAGAAATATTGAAACTGTTTGAAGG
CAGGGATACAATTTCAGAAAATGACTACATTGGGCTGGaagaagaattta
aaaaatgcaagaaaatgTTTCAATTCTGGTCAGCTGATTATGACCAGCAA
CGTGATCTGCATCTGAAACATATGTTGGATGTTTATACTAAAGGTTCTTG
GATTTTATACACTGTCACTGACATGCAAGAAGATCTTGTGAAGGCTACAG
GA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007971XLOC_007971Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014258-proteinTCONS_00014258-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014258-exon-sc0000183-1491911889:114496..114901TCONS_00014258-exon-sc0000183-1491911889:114496..114901Clytia hemisphaericaexon
TCONS_00014258-exon-sc0000183-1510915933:114496..114901TCONS_00014258-exon-sc0000183-1510915933:114496..114901Clytia hemisphaericaexon
TCONS_00014258-exon-sc0000183-1575043694:114496..114901TCONS_00014258-exon-sc0000183-1575043694:114496..114901Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000183supercontigsc0000183:114496..114901 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.94297	5.3296	4.68987	3.59084	0.485723	0.76765	0.926137	1.51732	5.99581	12.161	13.8666	3.59817	11.1388	11.1946	13.3691	15.5269	2.97424	3.46421	0.382879	0.600984	2.78594	0.812386	5.57517	3.75455	0.193355	0.172564	2.06595	0.52708	3.79783	2.29107
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014258 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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