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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014352 ID=TCONS_00014352|Name=TCONS_00014352|organism=Clytia hemisphaerica|type=transcript|length=1476bp
aatctcacagaaacacacccttacagtgcattttgggatactgaaaaacc
ccacccttaagcgcggcacatgacgtaggccagatcatatgagtgccccc
ccccgggcctaAACGGCAATAAGCATGAAGCTGCATGAAGTCCAAGTAAT
GTTTAGTAGTCGTTCAAGCAACAGTTTGTATTAGATTGGGGTACATCGAT
ATAAGAGTTGACCTTAAGACTTTTCGCAGAACCTTCAAAATATACCGTCG
TTTTTCGGTGCCGTGGGTTTTCGGTCCTCTTAAATGCGAGGTTGTCGTAC
AAATGAATTATTGAATCCAGTGAACTAGGTTTAGTCTCCTTTATTATGAA
CAAAGACACGTGTTCTATCTTAAACATTTATTTGACTGATCTTCACTAAA
GATTGCCATCCTGGCgatggcatgaaactttgagtatgaaatcAATTTAC
TCAAACTAGTAATTTGACTGATTATTTATTTAATTGTATCTAAGTTATCT
AGCTTAACACTTTTAGTTTTGCAGACCAGATActaaaaattcacaaaaaa
acgACGACCTCGTAAAACAGAGGACCCAAAAACGACGGCGTCGAGAAacg
gaggcttcaaaaatgacGTTGACGTCTTTCCGACGGCGATGCCCTTGATA
AAAACAATGTTCACAGAATGTAAATACATGAGCACTCGAACGAAACCCTG
TCTTAACCTAATCCTCTATTAAGCCTTCGGTAATCATTTTTGACGattgt
gaaaattgaataataaaAGTCActaattgttttgattttatctgAGATAT
AGGATCAAACTGTGTGACTAATTGCTCTCTGGTATAATCAAGAGGAATTA
AGGACCACATTCTGAGACCCATTTAACATTGATCCCTCTTCAGAAATAAA
AATGCTTTCCTGATGAAGGTTTTTTATGAAGGTTTTTattatgttaaaaa
ataaacttgTTCAATGTTTTATATCTGTGCGCTGTATATGCACTGTCATG
ATTGGTAGAAGATGTTCTTCTTTGCCTTgaggaatttatttattttgctc
ACAATTCTATTTTGTTGTTATTCTAATGTGAAAACACAACCTATCGCTGG
TGAGGTTCAGCTTTCTATTAAACATACAATCGTTAAAAGACATGCAGCCC
CGGATCCAAAACCGAAACCACAACCTAAAGGTGGTGATACGAATAGTGGC
AGATTATCAGAGTCTCATGAAGGTCTGGAGGTGTACCATGAAGTGAAGGC
TGATGCCAGCGCACTTGTTTTTACTGCTATTGCTCTAACTTTGGCTCTTG
TAGGAGGTATCGTTGGAATTTATTGTTACTGGCAAGAAACTTTATTTATG
TGTTGATAAGTTATTATTTTGAAGTATAACCAAAATTGTAATTTAATAGT
ATTTCATACATACTGGATTTGTGGAAGGTTTTTTGTAGCAGAAATTTTGC
AAAGAAAGATTTGTAGAAAGTTTTAC Run BLAST on NCBI protein sequence of TCONS_00014352-protein >TCONS_00014352-protein ID=TCONS_00014352-protein|Name=TCONS_00014352-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
MFFFALRNLFILLTILFCCYSNVKTQPIAGEVQLSIKHTIVKRHAAPDPK
PKPQPKGGDTNSGRLSESHEGLEVYHEVKADASALVFTAIALTLALVGGI
VGIYCYWQETLFMC Run BLAST on NCBI transcript from alignment at sc0000185:444585..446060 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014352 ID=TCONS_00014352|Name=TCONS_00014352|organism=Clytia hemisphaerica|type=transcript|length=1476bp|location=Sequence derived from alignment at sc0000185:444585..446060 (Clytia hemisphaerica)
GTAAAACTTTCTACAAATCTTTCTTTGCAAAATTTCTGCTACAAAAAACC
TTCCACAAATCCAGTATGTATGAAATACTATTAAATTACAATTTTGGTTA
TACTTCAAAATAATAACTTATCAACACATAAATAAAGTTTCTTGCCAGTA
ACAATAAATTCCAACGATACCTCCTACAAGAGCCAAAGTTAGAGCAATAG
CAGTAAAAACAAGTGCGCTGGCATCAGCCTTCACTTCATGGTACACCTCC
AGACCTTCATGAGACTCTGATAATCTGCCACTATTCGTATCACCACCTTT
AGGTTGTGGTTTCGGTTTTGGATCCGGGGCTGCATGTCTTTTAACGATTG
TATGTTTAATAGAAAGCTGAACCTCACCAGCGATAGGTTGTGTTTTCACA
TTAGAATAACAACAAAATAGAATTGTgagcaaaataaataaattcctcAA
GGCAAAGAAGAACATCTTCTACCAATCATGACAGTGCATATACAGCGCAC
AGATATAAAACATTGAAcaagtttattttttaacataatAAAAACCTTCA
TAAAAAACCTTCATCAGGAAAGCATTTTTATTTCTGAAGAGGGATCAATG
TTAAATGGGTCTCAGAATGTGGTCCTTAATTCCTCTTGATTATACCAGAG
AGCAATTAGTCACACAGTTTGATCCTATATCTcagataaaatcaaaacaa
ttagTGACTtttattattcaattttcacaatCGTCAAAAATGATTACCGA
AGGCTTAATAGAGGATTAGGTTAAGACAGGGTTTCGTTCGAGTGCTCATG
TATTTACATTCTGTGAACATTGTTTTTATCAAGGGCATCGCCGTCGGAAA
GACGTCAACgtcatttttgaagcctccgtTTCTCGACGCCGTCGTTTTTG
GGTCCTCTGTTTTACGAGGTCGTcgtttttttgtgaatttttagTATCTG
GTCTGCAAAACTAAAAGTGTTAAGCTAGATAACTTAGATACAATTAAATA
AATAATCAGTCAAATTACTAGTTTGAGTAAATTgatttcatactcaaagt
ttcatgccatcGCCAGGATGGCAATCTTTAGTGAAGATCAGTCAAATAAA
TGTTTAAGATAGAACACGTGTCTTTGTTCATAATAAAGGAGACTAAACCT
AGTTCACTGGATTCAATAATTCATTTGTACGACAACCTCGCATTTAAGAG
GACCGAAAACCCACGGCACCGAAAAACGACGGTATATTTTGAAGGTTCTG
CGAAAAGTCTTAAGGTCAACTCTTATATCGATGTACCCCAATCTAATACA
AACTGTTGCTTGAACGACTACTAAACATTACTTGGACTTCATGCAGCTTC
ATGCTTATTGCCGTTtaggcccgggggggggcactcatatgatctggcct
acgtcatgtgccgcgcttaagggtggggtttttcagtatcccaaaatgca
ctgtaagggtgtgtttctgtgagatt Coding sequence (CDS) from alignment at sc0000185:444585..446060 >TCONS_00014352 ID=TCONS_00014352|Name=TCONS_00014352|organism=Clytia hemisphaerica|type=CDS|length=345bp|location=Sequence derived from alignment at sc0000185:444585..446060 (Clytia hemisphaerica)
TCAACACATAAATAAAGTTTCTTGCCAGTAACAATAAATTCCAACGATAC
CTCCTACAAGAGCCAAAGTTAGAGCAATAGCAGTAAAAACAAGTGCGCTG
GCATCAGCCTTCACTTCATGGTACACCTCCAGACCTTCATGAGACTCTGA
TAATCTGCCACTATTCGTATCACCACCTTTAGGTTGTGGTTTCGGTTTTG
GATCCGGGGCTGCATGTCTTTTAACGATTGTATGTTTAATAGAAAGCTGA
ACCTCACCAGCGATAGGTTGTGTTTTCACATTAGAATAACAACAAAATAG
AATTGTgagcaaaataaataaattcctcAAGGCAAAGAAGAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014352-exon-sc0000185-1491911889:444585..446060 | TCONS_00014352-exon-sc0000185-1491911889:444585..446060 | Clytia hemisphaerica | exon |
| TCONS_00014352-exon-sc0000185-1510915933:444585..446060 | TCONS_00014352-exon-sc0000185-1510915933:444585..446060 | Clytia hemisphaerica | exon |
| TCONS_00014352-exon-sc0000185-1575043694:444585..446060 | TCONS_00014352-exon-sc0000185-1575043694:444585..446060 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000185 | supercontig | sc0000185:444585..446060 . |
Blast
The following BLAST results are available for this feature:
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