TCONS_00014460 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014460
Unique NameTCONS_00014460
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length828

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014460 ID=TCONS_00014460|Name=TCONS_00014460|organism=Clytia hemisphaerica|type=transcript|length=828bp
CCCAATCAAGAATAATGCTGGATGCAAAGTTTGTAATTAATAGAGCATTG
TCTTATCATTTTAATTACATAATATTTCCCGAATTTAGAAAACAAATCGT
GTCTGAAAGTCAcgattattttccttttttagaaGCACGAGAGATGAATG
AAAATCTCACACTTGTGTGTAAACTGAAGCGATTGGGAGAGCGTCAAAAA
TATTGTATCGTAACAAGGGTCAGTAACTCTAGCATAACAATATGGTAAAT
ATCATGGATGCTTTTTATGTCATCAAAAATATGTATTAAAGACGTCTTTT
AGTTCTCAAAAAGTTGTTAGTATGATGATAAccgcaaaaaaattgacttt
ttagcGCGAAAAATAGTTACACGGAAATGACTAAGGATGTGTTGCTCCTG
AAAAAGTGTTAGTTCATAGCATATAAAATAAGAAACGCTGTTAAAAAAGG
GTTACGTAATGATAACGTAATTTGATTGGATTATAACATGTTACATAATG
ACAACGTAACTGTGATAGATTCTAAACTTAGAGAATTTGACATAATAATA
CATATATTCATCGGAGAAGCATAACAAAAttggcttttataagaaaaaat
ttaatggAATACGAGGCTCCacgatttttatcaaaaacttaaaagaaaaa
atctaaaaaaactcTAACTTTCATTGATTCTTTTTCGcaagaaatgaaaa
acacaTTTAAGACTCATTCCACCCGGCAGTTTGCGTGATGGCGCGTAAAT
TAGGACTTTTTAACGTGATAACGTGATCTATGATTTCAAAAAGCGTGATA
CGCAATTGATAAAAGGGGATTTTTTAGG
Run BLAST on NCBI

transcript from alignment at sc0000187:288546..289373

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014460 ID=TCONS_00014460|Name=TCONS_00014460|organism=Clytia hemisphaerica|type=transcript|length=828bp|location=Sequence derived from alignment at sc0000187:288546..289373 (Clytia hemisphaerica)
CCTAAAAAATCCCCTTTTATCAATTGCGTATCACGCTTTTTGAAATCATA
GATCACGTTATCACGTTAAAAAGTCCTAATTTACGCGCCATCACGCAAAC
TGCCGGGTGGAATGAGTCTTAAAtgtgtttttcatttcttgCGAAAAAGA
ATCAATGAAAGTTAgagtttttttagattttttcttttaagtttttgata
aaaatcgtGGAGCCTCGTATTccattaaattttttcttataaaagccaaT
TTTGTTATGCTTCTCCGATGAATATATGTATTATTATGTCAAATTCTCTA
AGTTTAGAATCTATCACAGTTACGTTGTCATTATGTAACATGTTATAATC
CAATCAAATTACGTTATCATTACGTAACCCTTTTTTAACAGCGTTTCTTA
TTTTATATGCTATGAACTAACACTTTTTCAGGAGCAACACATCCTTAGTC
ATTTCCGTGTAACTATTTTTCGCgctaaaaagtcaatttttttgcggTTA
TCATCATACTAACAACTTTTTGAGAACTAAAAGACGTCTTTAATACATAT
TTTTGATGACATAAAAAGCATCCATGATATTTACCATATTGTTATGCTAG
AGTTACTGACCCTTGTTACGATACAATATTTTTGACGCTCTCCCAATCGC
TTCAGTTTACACACAAGTGTGAGATTTTCATTCATCTCTCGTGCttctaa
aaaaggaaaataatcgTGACTTTCAGACACGATTTGTTTTCTAAATTCGG
GAAATATTATGTAATTAAAATGATAAGACAATGCTCTATTAATTACAAAC
TTTGCATCCAGCATTATTCTTGATTGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008086XLOC_008086Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014460-exon-sc0000187-1491911889:288546..289373TCONS_00014460-exon-sc0000187-1491911889:288546..289373Clytia hemisphaericaexon
TCONS_00014460-exon-sc0000187-1510915933:288546..289373TCONS_00014460-exon-sc0000187-1510915933:288546..289373Clytia hemisphaericaexon
TCONS_00014460-exon-sc0000187-1575043694:288546..289373TCONS_00014460-exon-sc0000187-1575043694:288546..289373Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000187supercontigsc0000187:288546..289373 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.171944	0.167672	0.843629	1.33327	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014460 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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