TCONS_00014497 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00014497
Unique Name	TCONS_00014497
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2678

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000188:94866..99822-

transcript sequence

>TCONS_00014497 ID=TCONS_00014497|Name=TCONS_00014497|organism=Clytia hemisphaerica|type=transcript|length=2678bp
TTCAgcggaaaaaaaagaaaattctcaatgaaaaaacaaagatgTTAGAT
GTGGTGATAGTTGGAGGTGGTGCAAGTGGCTTGGCGTGTTGTCATCGATT
GTTGAAACATGATCCAACACTTAATATCAAAATCCTTGAAGCCAAAGacA
GGTTAGGTGGTCGAATTTTTGCAAAAgatttgaaagttgctgatgGAACT
GAATCATATGATCTCGGTGGTCAATGGATAGGAAGATCGCAAATCCACGC
TATTCGATTGTTGAAGGAATTCGACTTATCATTATATGATCAAAATTATG
ATGGCAGCACAGTCAACATCCTTGATAAAGGGACGACATTCTACACAAGC
TCTCCACTCAGTTTAGCCTTCCAATCCGTTTATTTCGCTTACGACATGAT
TCAAGGGATGAAAAAGATTGATGAATATTCGCAGGAGATCAGTATCGAAG
AGCCATTGTCACATCCACGTGCTAAAGAATGGGATAATTTACCAATGAGT
CACGCTAAACAATACCTGTTCAAACACCAGTGGAGCAGGAAATTGTTGGA
TATAGCATTTATCACGATGTTTGGCTTTGATTTGAACCAAGCATCATTTC
TGTATGTGTTATTGTACGCAAAGTGTGCAGGGGGGATGACCGTCCTCATC
GATGACCGATTCCCTGGTAATGCTCAAGAATCCAAAGTCAAGGGTGGAAT
GTTCAAGTTGATTGAAAAGTTGAAAGGGGCGGTTGGCGAGGAGAAAATTC
TGCTGAACAGACGGGTGACCAGTATCCATAATCACGTGATCGATGACCAG
AATGGTTTTTGTTCTATTCGCACGGAAAACACTGAAGAATTCCAATGCAA
ATATGTTGTAATGGCTGTTCCTCCACATTTGATCAGTAACATAAAAATGA
CACCGGAACTTCCCACAGAACACAAACgacttttgcaattttcaaaCGTT
GGTTGCTTGATGAAATGCATAGCAACATACAAGAGGAAGTTTTGGCAAGA
GAACGGTTTGTCTGGTATGTCATTACACTGGCCATATTACGCAGAAGAAA
GGAGTATTGAACATCCAGTCAGTATCACATACGATGCCACCTCTTGCAAT
GGCAAACCTGCTCTTGTTGGCTTCATCGGTGGATCCTTAATCCAAAAAAT
GAGACATCTCACTGAAGATAAGATCAAGAGAGCTATCATCAATTCCTTCG
TCCTGTTCTTTGGGGACGAAGCCAAGGAATACATTGACATTGCTTTTCAG
GATTGGTCGAAGGTTGAAGACAACGGAGGATGTCCTGTCACTTTCACAAC
TCCTGGTGCTGTATCCAAATATGGAGATGTCTGCTTACGTCAACCTCATC
TAAGAACTCATTTTGCCGGTACGGAGACGGCTACATTGTGGCGTGGCTTC
GTCAGTGGGGCGGTTCAGTCAGGTGAGAGGGCGGCAGACGAGATAATCAG
ACGATTGGATACTTCATACGTTCCCAAAGACATAGTAAGATTTGAAGACA
TCCTTCTTTCAGGAGCTTTCACTGAACAAAGAAATACCTATTATATTCTC
GTAGGGGTCGCTTCATTGTCTATACTAACCTTCTGTGGGCTGAGTGCTTA
TGTTGTCTTAAAATGGAACAATTGAGTTCAGTTTTATCTCCTTCGATCTC
TGTCTACTTCATTAATGAACATCTTTTCCATTAATAATTCTTGAACGCGT
TACGCCTCTCTTTGATTTCGCAATCCTTAATGTTAATGATGTCTGTAATG
CAATGACTGATCCAAATTAGAATACGAAAgctaattttccttttttttcg
cAATTTCATCAGAGTACTTTCTATTTAGAGAACAAGATAACAAACTAACA
AATGTAGCGGAAATCTCTGATACACGTACAGTAGAAAATTTCTCGGACTT
TTCACCACCCAGAATACTAATAATAAATCTTACCTTCTTTAAAAATGACA
GACAatgaattttgcaaaaatatcgtatttttaaattgtttttgtaataa
aattttaattatacATTTGATAAAGGATGTAAAAGAtcttaaataaaaat
atttacaatgaTATTTTATACAAATAACTCGTAAAGTAAACTTTGGCTGC
TCTTTAAGCAcatcttttccttttttgcagTCAATCAATTAAGTCAATCG
CTAGAGCATTAAAAGCTCAATCTATGACATGCGAGAGGTATCTAGATATT
ACGAAATTCCGATTTTAATGACATATTGTTGTTTTTAGAATGGCTAACTT
CaaatttcattatcttttgtCGATGTTTCATACGCTCTGTGATATTCTCG
ATATTTCAATTCTTGGCNTCTTTTGTCGATGTTTCATACGCTCTGTGATA
TTCTCGATATTTCAATTATTGGAGAgtatattttgaatgaaaattcaaaa
gaacCCTCGAATCCATTTTGACTGAATTCCTTAGATTGGTGCCATGTCGT
ATCACCTTCGGTCTCTTCAATAAGAAAGAGTTTGGTTTCAAGTATCCATC
AATTTAGTTGTCCCATTCGAATTGTTGTTGTTTGCTTCCTTCACTTCAct
ctcctttttcttttttcgtgaAAGTCTTAATAATTGATGATATAATGTGA
ACAGAAACAAATCAACAAATTCCACTAACGTCAAAACACTGGCTCCCAAC
ATCAAACCGAGCTGTCCTCCAACGTCAC

Run BLAST on NCBI

transcript from alignment at sc0000188:94866..99822-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00014497 ID=TCONS_00014497|Name=TCONS_00014497|organism=Clytia hemisphaerica|type=transcript|length=4957bp|location=Sequence derived from alignment at sc0000188:94866..99822- (Clytia hemisphaerica)
TTCAGCGGAAAAAAAAGAAAATTCTCAATGAAAAAACAAAGATGTTAGAT
GTGGTGATAGTTGGAGGTGGTGCAAGTGGCTTGGCGTGTTGTCATCGATT
GTTGAAACATGATCCAACACTTAATATCAAAATCCTTGAAGCCAAAGGTA
TCTAATGCTTTTGTCAATTAAAAATAATCTAAAAAGCACCCCCTAAACGA
AAGTTATGTTTATTATGCTTTTTCAGATGGGACAATCTAATTGAATTTTT
TTATTGAGAACCCCACCCCACCCCACTTGAATGAAAAGAATCAACTTGTT
ATACGAGTAAACGAAAACGAAGGTCTTTTGATTTTTAAGACAGGTTAGGT
GGTCGAATTTTTGCAAAAGATTTGAAAGTTGCTGATGGAACTGAATCATA
TGATCTCGGTGGTCAATGGATAGGAAGGTAATATTATCAAGGAATTGGAC
TAAACACCTTTGTTATCCATTGCAAGCAGTGTTATAGTTCGATGGATCGA
GAAAAATTGAGTGAAATTCAAAGTAAAGATAATTTTCCAAAGTCGGTCCT
TTAACGTGCCCCCTATAAAGATATCTTTGGAGCAATTGCGCGTGTGAAGC
GAAAACGATATTCAGATTTTCCTCTTTAATTTTAGAGTGTAAAAAAGTGA
TGGGGTATCGAACCAGCGTGTGTGGAGGGGGAGGTTGCCACCTGGCACCA
TGTTATACTGTTTTAAAGCCTTTTTTAGACGTTTTTTTGTCTTGGAGTAA
AAACTTGGACAATCAAAACCTAAAGAAAGTGTGTATATCACATTTCGATG
AGAACTTTTTACGCCCAAAAATTTAGATCGCAAATCCACGCTATTCGATT
GTTGAAGGAATTCGACTTATCATTATATGATCAAAATTATGATGGCAGCA
CAGTCAACATCCTTGATAAAGGGACGACATTCTACACAAGCTCTCCACTC
AGTTTAGCCTTCCAATCCGTTTATTTCGCTTACGACATGATTCAAGGGAT
GAAAAAGGTCTGTTTATAACTATTAAAGTATCCATGCTATTTTAGAATTG
TGTTTCTTTAGGCTTTACATAGGTTTTCTATAAAAACCAAGATAAGAATA
ATGCCTTGATATTCTATTTTAGCCTCTGTCGTCTAACTTACTGCATTCAA
GCATTGGTAAAATTAATGTTCTTGTGTTTTCAGATTGATGAATATTCGCA
GGAGATCAGTATCGAAGAGCCATTGTCACATCCACGTGCTAAAGAATGGG
ATAATTTACCAATGAGTCACGCTAAACAATACCTGTTCAAACACCAGTGT
AACCAAACCTTGTTCTCTTCATACTTTTCACCACACAATTTGAATTCAAA
TTTGAAGCTTTACTAGAAAAGTTTACAACAACATGAATTACATCTTCTAA
AACAATGTGTCTTTCGATTTGCAGGGAGCAGGAAATTGTTGGATATAGCA
TTTATCACGATGTTTGGCTTTGATTTGAACCAAGCATCATTTCTGTATGT
GTTATTGTACGCAAAGTGTGCAGGGGGGATGACCGTCCTCATCGATGACC
GATTCCCTGGTAATGCTCAAGAATCCAAAGTCAAGGTAAGAGTTGATGGA
TCATCCCGATTCTATTTCTAAAAATCAACCAACTCTGTGAACCTGTTTCC
TTAAATTCGGATTTTTTTCATGAACATCATGTAGGGTGGAATGTTCAAGT
TGATTGAAAAGTTGAAAGGGGCGGTTGGCGAGGAGAAAATTCTGCTGAAC
AGACGGGTGACCAGTATCCATAATCACGTGATCGATGACCAGAATGGTTT
TTGTTCTATTCGCACGGAAAACACTGAAGAATTCCAATGCAAATATGTTG
TAATGGCTGTTCCTCCACATTTGATCAGTAAGAAATGGCCGGTTTTATAA
AAAAGGCAACTAAATTTTGCGAATTTTCCAAACTGCGTAAAAATTAAAAA
AGTGCTGTCGCCTAAATCAGCTCTATGCAAAAAATAAGTTTTTTCAATAT
TCTCTAAAATAACCCCTACTTGTTGTCTTTAAAACACTCATTTTTAGGCA
AAAAGAACGAATTTACCCTGTCATTCGCCAAAATTAGTTCTAGTGAAAAT
TAAAAGAATTAGTTGCTTTGCAAAAGTTTCCTCGTTTAAAACTTTTATGG
AATTCTTTGCCACTCGCCAAAATTAGGTCTCGCCAAATTTACTTCCCTTA
ATCTACTACTTTTTCTGTTTGTTTTTCTGATTCACTTTTTTTGGATTCGG
AAGATGACCAACGATAATCATGACACATGAGCTTTCCGTTATTCAGGTAA
CATAAAAATGACACCGGAACTTCCCACAGAACACAAACGACTTTTGCAAT
TTTCAAACGTTGGTTGCTTGATGAAATGCATAGCAACATACAAGAGGAAG
TTTTGGCAAGAGAACGGTTTGTCTGGTATGTCATTACACTGGCCATATTA
CGCAGAAGAAAGGAGTATTGAACATCCAGTCAGTATCACATACGATGCCA
CCTCTTGCAATGGCAAACCTGCTCTTGTTGGCTTCATCGGTGGATCCTTA
ATCCAAAAAATGAGACATCTCACTGTTAGTTCTGTTTATAAATCAGTGTT
AAAAACTCTTCCTTCTCAGCGAAGTATACAAAGAGGCTTTTGTTGTGTCA
AAGCTCTACATAATTCACCCTAAATTACAAGAGTATTTGCTAATTTGCTG
TTTAAAATTGAAAATGCGGAATACCGTCTCAGACGAAAGAAAAGCCATCC
TTAAATGTTGTAATAAAATGAACATTCAGTTTCTTGTGCTAGGAAAACTA
TGTAGTTCACAATCCACAAAGAGTTCATGAATCGGCTGTGCTCAATATAA
AGAAATTTTAGCATTCTTTATAAACTTTTTGATAGTAGACGAAAACTGTA
GCACAATATTTCTACTCCTCTTATTTTTCTACAGGAAGATAAGATCAAGA
GAGCTATCATCAATTCCTTCGTCCTGTTCTTTGGGGACGAAGCCAAGGAA
TACATTGACATTGCTTTTCAGGTATTACTGCACTACACACATACGTCGTT
TCTAAACAGTTATTTCTGTTGTTAAAAAAAATATGTTTTGTATTTTGTTT
TATATCGACCTTCTGGCCCTTAGTAAAACATCAGTTACATCAGATCAAAA
TATTTCACTGATAAACTATTTTGGTAGGATTGGTCGAAGGTTGAAGACAA
CGGAGGATGTCCTGTCACTTTCACAACTCCTGGTGCTGTATCCAAATATG
GAGATGTCTGCTTACGTCAACCTCATCTAAGGTATTTCAAAATTTGCTAT
AATTTATCTCTCTTTCTTCCTTTTAGCCAGGCTCGAGTGAGGCTTCAAAA
GCATAAACTTTGAAACCTCAATCTCTTTAGTAACTGGTTGGTCTTCTGGA
GCATAACATTTCCAGTACATATTTGTGATATGATACCTTTAAAACTGAAT
AGTCTTGGTAACCTTTTCTATGGTTANTGGAGCATAACATTTCCAGTACA
TATTTGTGAAATGATACCTTTAAAACTGAATTGTCTTGGTAACCTTCTAT
GGTTCATACAATTCCAATTCGTTGAAAACTAAATCTAAGATTTAGATTTT
TTGTATTTTGCTTGTCCTACACTTTGTACATAGAACTCATTTTGCCGGTA
CGGAGACGGCTACATTGTGGCGTGGCTTCGTCAGTGGGGCGGTTCAGTCA
GGTGAGAGGGCGGCAGACGAGATAATCAGACGATTGGATACTTCATACGT
TCCCAAAGACATAGTAAGATTTGAAGACATCCTTCTTTCAGGAGCTTTCA
CTGAACAAAGAAATACCTATTATATTCTCGTAGGGGTCGCTTCATTGTCT
ATACTAACCTTCTGTGGGCTGAGTGCTTATGTTGTCTTAAAATGGAACAA
TTGAGTTCAGTTTTATCTCCTTCGATCTCTGTCTACTTCATTAATGAACA
TCTTTTCCATTAATAATTCTTGAACGCGTTACGCCTCTCTTTGATTTCGC
AATCCTTAATGTTAATGATGTCTGTAATGCAATGACTGATCCAAATTAGA
ATACGAAAGCTAATTTTCCTTTTTTTTCGCAATTTCATCAGAGTACTTTC
TATTTAGAGAACAAGATAACAAACTAACAAATGTAGCGGAAATCTCTGAT
ACACGTACAGTAGAAAATTTCTCGGACTTTTCACCACCCAGAATACTAAT
AATAAATCTTACCTTCTTTAAAAATGACAGACAATGAATTTTGCAAAAAT
ATCGTATTTTTAAATTGTTTTTGTAATAAAATTTTAATTATACATTTGAT
AAAGGATGTAAAAGATCTTAAATAAAAATATTTACAATGATATTTTATAC
AAATAACTCGTAAAGTAAACTTTGGCTGCTCTTTAAGCACATCTTTTCCT
TTTTTGCAGTCAATCAATTAAGTCAATCGCTAGAGCATTAAAAGCTCAAT
CTATGACATGCGAGAGGTATCTAGATATTACGAAATTCCGATTTTAATGA
CATATTGTTGTTTTTAGAATGGCTAACTTCAAATTTCATTATCTTTTGTC
GATGTTTCATACGCTCTGTGATATTCTCGATATTTCAATTCTTGGCNTCT
TTTGTCGATGTTTCATACGCTCTGTGATATTCTCGATATTTCAATTATTG
GAGAGTATATTTTGAATGAAAATTCAAAAGAACCCTCGAATCCATTTTGA
CTGAATTCCTTAGATTGGTGCCATGTCGTATCACCTTCGGTCTCTTCAAT
AAGAAAGAGTTTGGTTTCAAGTATCCATCAATTTAGTTGTCCCATTCGAA
TTGTTGTTGTTTGCTTCCTTCACTTCACTCTCCTTTTTCTTTTTTCGTGA
AAGTCTTAATAATTGATGATATAATGTGAACAGAAACAAATCAACAAATT
CCACTAACGTCAAAACACTGGCTCCCAACATCAAACCGAGCTGTCCTCCA
ACGTCAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_008109	XLOC_008109	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000188	supercontig	sc0000188:94866..99822 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.457622	0.566541	0.979935	1.13894	2.28388	0.934562	0.962742	1.10743	3.85148	3.33553	2.7028	4.95441	8.5566	4.83309	13.6408	20.1721	6.99824	7.81789	0.88132	0.500085	6.25998	6.59934	2.82602	3.49447	2.25945	2.37744	2.68037	3.88016	10.237	10.4394

Blast

[Close]

BLAST of TCONS_00014497 vs. Swiss-Prot (Human)
Match: AOFA (Amine oxidase [flavin-containing] A OS=Homo sapiens GN=MAOA PE=1 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 5.116e-63
Identity = 155/480 (32.29%), Postives = 247/480 (51.46%), Query Frame = 3

Query:   42 MLDVVIVGGGASGLACCHRLLKHDPTLNIKILEAKDRLGGRIFAKDLKVADGTESYDLGGQWIGRSQIHAIRLLKEFDLSLYDQNYDGSTVNILDKGTTFYTSSPLSLAFQSVY--FAY-DMIQGMKKIDEYSQEISIEEPLSHPRAKEWDNLPMSHAKQYLFKHQWSRKLLDIAFITM---FGFDLNQASFLYVLLYAKCAGGMTVLIDDRFPGNAQESKVKGGMFKLIEKLKGAVGEEKILLNRRVTSIHNHVIDDQNGFCSIRTENTEEFQCKYVVMAVPPHLISNIKMTPELPTEHKRLLQFSNVGCLMKCIATYKRKFWQENGLSGMSLHWPYYAEERSIEHPVSITYDATSCNGK-PALVGFIGGSLIQKMRHLTEDKIKRAIINSFVLFFGD-EAKEYIDIAFQDWSKVEDNGGCPVTFTTPGAVSKYGDVCLRQPHLRTHFAGTETATLWRGFVSGAVQSGERAADEIIRRL 1457
            M DVV++GGG SGL+    L ++   +++ +LEA+DR+GGR +    +  D     D+GG ++G +Q   +RL KE  +  Y  N     V  + KG T+    P   AF  V+   AY D     + ID   +EI  + P     A +WD + M   K+ + K  W++     A++ +      + ++ S L+ L Y K  GG T +         QE K  GG  ++ E++   +G++ + LN  VT +     D  +    I T N E ++CKYV+ A+PP L + I   PELP E  +L+Q   +G ++KC+  YK  FW++    G  +      E+   + P+SIT D T  +G  PA++GFI      ++  L ++  K+ I   +    G  EA   +    ++W + + +GGC   +  PG +++YG V +RQP  R  FAGTETAT W G++ GAV++GERAA E++  L
Sbjct:   13 MFDVVVIGGGISGLSAAKLLTEYG--VSVLVLEARDRVGGRTYTIRNEHVD---YVDVGGAYVGPTQNRILRLSKELGIETYKVNVSERLVQYV-KGKTY----PFRGAFPPVWNPIAYLDYNNLWRTIDNMGKEIPTDAPWEAQHADKWDKMTM---KELIDKICWTKTARRFAYLFVNINVTSEPHEVSALWFLWYVKQCGGTTRIFS--VTNGGQERKFVGGSGQVSERIMDLLGDQ-VKLNHPVTHV-----DQSSDNIIIETLNHEHYECKYVINAIPPTLTAKIHFRPELPAERNQLIQRLPMGAVIKCMMYYKEAFWKKKDYCGCMI-----IEDE--DAPISITLDDTKPDGSLPAIMGFILARKADRLAKLHKEIRKKKICELYAKVLGSQEALHPVHYEEKNWCEEQYSGGCYTAYFPPGIMTQYGRV-IRQPVGRIFFAGTETATKWSGYMEGAVEAGERAAREVLNGL 463

The following BLAST results are available for this feature:

BLAST of TCONS_00014497 vs. Swiss-Prot (Human)

BLAST of TCONS_00014497 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
AOFA	5.116e-63	32.29	Amine oxidase [flavin-containing] A OS=Homo sapien...	[more]

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TCONS_00014497 (transcript) - C. hemisphaerica