TCONS_00014537 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014537
Unique NameTCONS_00014537
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length751

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014537 ID=TCONS_00014537|Name=TCONS_00014537|organism=Clytia hemisphaerica|type=transcript|length=751bp
CTTGGCTTCACATAATAGTTCTACGCGCTTAGTGATATTCTTTTTCACTA
TGAATTTGCAGACCTCGAGAATTGTCAGCCTGCGACATGTTTTCTTGTTC
GCCTTTGTTGATGAGGTGGGATTTTCAGATGGGTCCCCGCCCTCAGCCTC
AGCCCCAAGTTGCTCATCAGACTTTCGCTTGCGTCTACGCTCAGCATAGC
TGTTCATTGCGGCTTTGGTTGAGGGTGTGCCAACTTGAACGATGTTGGGA
TGGTTTTCGCTGCAAAACAAGTCCCCGTCAGATTTGCTGATGTACTCATA
GGCTGAGTCGTAGCCCCgatcattttctttgaaatttacCACGATACCGT
AGGTCTTTGTCAGAATTTCCTTTATCGGATTCCAACGACGTGGCTTCGTA
AGAAGAATGGAGGCGTGATAGTGGGCAGCCCCATCCTCATGGGCTTCTTG
GCACACTGCCCAGTAAACAGGGACAACCTTCCCCGGGGCATCTCTGAAGG
CTTTGGACACTGCGTCTCCGAAGGACTTGCGGGTGGGAAACTTTACAAGG
TCTGCCCTGGAGTAGGTGACCAGGTAAACGCTACGGACATCCTCGCTTCT
TAAATTCTCTAAAACTGTTGacaacattttcttttgtttgtatATACTTT
TTACCTATGCTATAGGtttttaaagagagaaaagtTTATCATTCAAACGT
ATTTACCCATATTTTATAGGATACCATTATACTTTGATAGGACAAAGGCT
A
Run BLAST on NCBI

protein sequence of TCONS_00014537-protein

>TCONS_00014537-protein ID=TCONS_00014537-protein|Name=TCONS_00014537-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
MLSTVLENLRSEDVRSVYLVTYSRADLVKFPTRKSFGDAVSKAFRDAPGK
VVPVYWAVCQEAHEDGAAHYHASILLTKPRRWNPIKEILTKTYGIVVNFK
ENDRGYDSAYEYISKSDGDLFCSENHPNIVQVGTPSTKAAMNSYAERRRK
RKSDEQLGAEAEGGDPSENPTSSTKANKKTCRRLTILEVCKFIVKKNITK
RVELLCEAK
Run BLAST on NCBI

transcript from alignment at sc0000188:437628..438378

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014537 ID=TCONS_00014537|Name=TCONS_00014537|organism=Clytia hemisphaerica|type=transcript|length=751bp|location=Sequence derived from alignment at sc0000188:437628..438378 (Clytia hemisphaerica)
TAGCCTTTGTCCTATCAAAGTATAATGGTATCCTATAAAATATGGGTAAA
TACGTTTGAATGATAAacttttctctctttaaaaaCCTATAGCATAGGTA
AAAAGTATatacaaacaaaagaaaatgttgtCAACAGTTTTAGAGAATTT
AAGAAGCGAGGATGTCCGTAGCGTTTACCTGGTCACCTACTCCAGGGCAG
ACCTTGTAAAGTTTCCCACCCGCAAGTCCTTCGGAGACGCAGTGTCCAAA
GCCTTCAGAGATGCCCCGGGGAAGGTTGTCCCTGTTTACTGGGCAGTGTG
CCAAGAAGCCCATGAGGATGGGGCTGCCCACTATCACGCCTCCATTCTTC
TTACGAAGCCACGTCGTTGGAATCCGATAAAGGAAATTCTGACAAAGACC
TACGGTATCGTGgtaaatttcaaagaaaatgatcGGGGCTACGACTCAGC
CTATGAGTACATCAGCAAATCTGACGGGGACTTGTTTTGCAGCGAAAACC
ATCCCAACATCGTTCAAGTTGGCACACCCTCAACCAAAGCCGCAATGAAC
AGCTATGCTGAGCGTAGACGCAAGCGAAAGTCTGATGAGCAACTTGGGGC
TGAGGCTGAGGGCGGGGACCCATCTGAAAATCCCACCTCATCAACAAAGG
CGAACAAGAAAACATGTCGCAGGCTGACAATTCTCGAGGTCTGCAAATTC
ATAGTGAAAAAGAATATCACTAAGCGCGTAGAACTATTATGTGAAGCCAA
G

Coding sequence (CDS) from alignment at sc0000188:437628..438378

>TCONS_00014537 ID=TCONS_00014537|Name=TCONS_00014537|organism=Clytia hemisphaerica|type=CDS|length=627bp|location=Sequence derived from alignment at sc0000188:437628..438378 (Clytia hemisphaerica)
atgttgtCAACAGTTTTAGAGAATTTAAGAAGCGAGGATGTCCGTAGCGT
TTACCTGGTCACCTACTCCAGGGCAGACCTTGTAAAGTTTCCCACCCGCA
AGTCCTTCGGAGACGCAGTGTCCAAAGCCTTCAGAGATGCCCCGGGGAAG
GTTGTCCCTGTTTACTGGGCAGTGTGCCAAGAAGCCCATGAGGATGGGGC
TGCCCACTATCACGCCTCCATTCTTCTTACGAAGCCACGTCGTTGGAATC
CGATAAAGGAAATTCTGACAAAGACCTACGGTATCGTGgtaaatttcaaa
gaaaatgatcGGGGCTACGACTCAGCCTATGAGTACATCAGCAAATCTGA
CGGGGACTTGTTTTGCAGCGAAAACCATCCCAACATCGTTCAAGTTGGCA
CACCCTCAACCAAAGCCGCAATGAACAGCTATGCTGAGCGTAGACGCAAG
CGAAAGTCTGATGAGCAACTTGGGGCTGAGGCTGAGGGCGGGGACCCATC
TGAAAATCCCACCTCATCAACAAAGGCGAACAAGAAAACATGTCGCAGGC
TGACAATTCTCGAGGTCTGCAAATTCATAGTGAAAAAGAATATCACTAAG
CGCGTAGAACTATTATGTGAAGCCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008143XLOC_008143Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014537-exon-sc0000188-1491911889:437628..438378TCONS_00014537-exon-sc0000188-1491911889:437628..438378Clytia hemisphaericaexon
TCONS_00014537-exon-sc0000188-1510915933:437628..438378TCONS_00014537-exon-sc0000188-1510915933:437628..438378Clytia hemisphaericaexon
TCONS_00014537-exon-sc0000188-1575043694:437628..438378TCONS_00014537-exon-sc0000188-1575043694:437628..438378Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014537-proteinTCONS_00014537-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000188supercontigsc0000188:437628..438378 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.441363	0.348771	0.252466	0.630282	0.275797	0.409943	0.795802	0.261564	0.653002	0.587729	0.223012	0.358989	0.0982768	0.251826	0	0	0.379726	0	0.0750518	0.204699	0.281114	0.564496	0.538528	0	0.0726523	0.222063
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014537 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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