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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014549 ID=TCONS_00014549|Name=TCONS_00014549|organism=Clytia hemisphaerica|type=transcript|length=2016bpRun BLAST on NCBI protein sequence of TCONS_00014549-protein >TCONS_00014549-protein ID=TCONS_00014549-protein|Name=TCONS_00014549-protein|organism=Clytia hemisphaerica|type=polypeptide|length=579bp NQSKGSETFQNFITFNSFCNGLCQRRIAFTHHPLQKTSLYFSFVHVPVCKRun BLAST on NCBI transcript from alignment at sc0000190:246551..261190+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014549 ID=TCONS_00014549|Name=TCONS_00014549|organism=Clytia hemisphaerica|type=transcript|length=14640bp|location=Sequence derived from alignment at sc0000190:246551..261190+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000190:246551..261190+ >TCONS_00014549 ID=TCONS_00014549|Name=TCONS_00014549|organism=Clytia hemisphaerica|type=CDS|length=22620bp|location=Sequence derived from alignment at sc0000190:246551..261190+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00014549 vs. Swiss-Prot (Human)
Match: IMA1 (Importin subunit alpha-1 OS=Homo sapiens GN=KPNA2 PE=1 SV=1) HSP 1 Score: 521.546 bits (1342), Expect = 5.066e-178 Identity = 264/523 (50.48%), Postives = 362/523 (69.22%), Query Frame = 1
Query: 184 RARSFKNRGKDIDDSRARRSTTSVQLRKAKKDQQILKKRNVAS---SMTSPLKEXXXXXXTPLLPLEDITTVLLNTINPAD-DKIYQAVQSARRLLSREKNPPIDNVIKAGLVPKLVQLLQYDQNTLIQFEASWAVTNIASGSSEQTRHVVEAGAVDQFIRLLSSKHEQVCEQSVWALGNIAGDGPTFRDLVINKGVIEPLLTLIT----NTRPCQFLRNVTWTLSNLCRNKNPAPKLETIKPALPALCYLVNHSDDDIIADACWALSYLTDGPNEKISIIIETGIVPRLVQLLASSNVSIITPALRAIGNIVTGDDTQTQQVVDNGALPYLKHLFDHSKSQIVKEAAWAVSNIAAGNSNQIQAIIDAGLVPLVVEALDKGEFKVRRECVWVITNYTSGGTTEQVGFLLMNNVIPPLCSMLNVQDLKSVNVALDSINHILLNARRMDSTGDAVDKVTYMIEECGGLDLIEALQTSPQDNVQSTAISIMDTYFECEPLEDDANVAPTATKDAY--QLSTAAAGS 1722
R FKN+GKD + R RR +V+LRKAKKD Q+LK+RNV+S TSPL+EN Q T ++DI + IN ++ + QA Q+AR+LLSREK PPIDN+I+AGL+PK V L + IQFE++WA+TNIASG+SEQT+ VV+ GA+ FI LL+S H + EQ+VWALGNIAGDG FRDLVI G ++PLL L+ ++ C +LRN+TWTLSNLCRNKNPAP ++ ++ LP L L++H D +++AD CWA+SYLTDGPNE+I ++++TG+VP+LV+LL +S + I+TPALRAIGNIVTG D QTQ V+D GAL L + K+ I KEA W +SNI AG +QIQ +++ GLVP +V L K +FK ++E VW +TNYTSGGT EQ+ +L+ +I PL ++L +D K + V LD+I++I A ++ T +K++ MIEECGGLD IEALQ ++V ++S+++ YF E E+D NV P T + Y Q+ A G+
Sbjct: 13 RLHRFKNKGKDSTEMRRRRIEVNVELRKAKKDDQMLKRRNVSSFPDDATSPLQENRNNQGTVNWSVDDI----VKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLVIKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLLHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIGNIVTGTDEQTQVVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTKIILVILDAISNIFQAAEKLGET----EKLSIMIEECGGLDKIEALQNHENESVYKASLSLIEKYFSVEE-EEDQNVVPETTSEGYTFQVQDGAPGT 526 The following BLAST results are available for this feature:
BLAST of TCONS_00014549 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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