TCONS_00014583 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014583
Unique NameTCONS_00014583
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length228

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014583 ID=TCONS_00014583|Name=TCONS_00014583|organism=Clytia hemisphaerica|type=transcript|length=228bp
GAATTGCTATCGATTGTTTCCAAAATGATTGGGCATTGTCTACAAGATAT
CGAACATACAAAAATGACTGTCAAACATATCAGTTGGTCTTCCATTAAAA
CTGTGATCTTTAAACTTGTTTATGGGCGTGACATTACAAGTTCATTGGAT
TCATTGACCCTCTCTGCCATGCTCGATTATTGGATCAGTCTTTCAAGCAC
ACGAAGAGATTTCGAGATTACAAGAGGT
Run BLAST on NCBI

transcript from alignment at sc0000190:411197..411865+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014583 ID=TCONS_00014583|Name=TCONS_00014583|organism=Clytia hemisphaerica|type=transcript|length=669bp|location=Sequence derived from alignment at sc0000190:411197..411865+ (Clytia hemisphaerica)
GAATTGCTATCGATTGTTTCCAAAATGATTGGGCATTGTCTACAAGATAT
CGAACATACAAAAATGACTGTCAAACATATCAGTTGGTCTTCCATTAAAA
CTGTGATCTTTAAAGTAAGTTAGAACCGCATTCCAGAAATATTGGGAAAC
ATCGCATACTCATTCCTGGATTTCGAGTTTTGTTTTGTGTGAATTTAAGT
ACGAAATCAATTTTTCTATTGTGAATGTTTAAACCTTAGCTCCGAGAGGA
TTCTACTTGCTCAGTAAAAGAATCTTTTCTTAAACAAATAGTAACGCAGT
TCTGAGGGTTTTGGCCAGGCCAGATCGTCACATTCGCCACATCACTCTAG
AGCAGAGCGTGGTGTGCGCAGAATGGATGTTCTGTTATGAGATTATATAT
GGCTGTCATTTTGCAACTATGATACTTTTGTGCAACAAGCGCAAAATCGC
AATTCAATTCCAACTTATTCGCACTTGTAATTTTCCTGACAGCTAATTTA
GAAATGATAGCCAAATAAATAACCATATAAATTCATTGTTTTTTATATCA
AATAGCTTGTTTATGGGCGTGACATTACAAGTTCATTGGATTCATTGACC
CTCTCTGCCATGCTCGATTATTGGATCAGTCTTTCAAGCACACGAAGAGA
TTTCGAGATTACAAGAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008160XLOC_008160Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014583-exon-sc0000190-1491911889:411197..411310TCONS_00014583-exon-sc0000190-1491911889:411197..411310Clytia hemisphaericaexon
TCONS_00014583-exon-sc0000190-1510915933:411197..411310TCONS_00014583-exon-sc0000190-1510915933:411197..411310Clytia hemisphaericaexon
TCONS_00014583-exon-sc0000190-1575043694:411197..411310TCONS_00014583-exon-sc0000190-1575043694:411197..411310Clytia hemisphaericaexon
TCONS_00014583-exon-sc0000190-1491911889:411752..411865TCONS_00014583-exon-sc0000190-1491911889:411752..411865Clytia hemisphaericaexon
TCONS_00014583-exon-sc0000190-1510915933:411752..411865TCONS_00014583-exon-sc0000190-1510915933:411752..411865Clytia hemisphaericaexon
TCONS_00014583-exon-sc0000190-1575043694:411752..411865TCONS_00014583-exon-sc0000190-1575043694:411752..411865Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000190supercontigsc0000190:411197..411865 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.86196	8.50749	8.14319	6.04006	23.5302	26.7287	11.2164	22.3138	6.94497	13.2228	2.92963	13.6505	0	2.25962	2.47695	0.664537	1.63731	4.19547	4.28146	1.21308	0	6.1715	5.85795	5.68387	51.5175	44.5609	8.2372	7.8856	4.8416	3.69962
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014583 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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