TCONS_00014641 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014641
Unique NameTCONS_00014641
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1701

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014641 ID=TCONS_00014641|Name=TCONS_00014641|organism=Clytia hemisphaerica|type=transcript|length=1701bp
NTCGTGATCATGGACTCGTACTAATAATTAGAGTTagataaattatttca
ttttgccaaaataattaattcgtACTAATTAGAGGACGgattaaattaga
agaatgacTGAATATTTCAATGAGTCTTTTCTTAGATAACAAAATGAGGC
GTGTAAGAAGATCTTTGGCAACCCTAGCAAAGATCAAGAGAAAAGATTTT
AGAACAGCAACGACCACACCTCCACTATTGAATAAACCATCGGAATACAA
AACCCGACGTCTGATCTCAACTTCGCATCGTGGCTTATACGCACCATCGG
TTATCGAAAACAACGAGAATCTTTCCCTCAAAGTTTCTTGGGACAATGGA
GAAGAATCAGAATTTGCAAATATTTTCCTCAGAGATCAATGTCAATGCCC
ATCATGTTTTAAAGTCGAATCATACAATCGATTATTGGAGCCATATACTA
TACCTTTGGACGTCAAAcccaaaaacattgaaatcacTCAAAACTCTATC
AATATTTCCTGGACAGATGAACATTTTAGTTCCTACCCGTTTGAGTATTT
ACAAAACATTCAGAAAGGATTAGATGATGATGTTCGATACTTAGAACCGA
TAATGTGGAAATCGGgttatttcaagaaaaacggaTTTCCAACGTATGAT
TTGTCGGATTtgattgaaaacgaaagtgccatGTTAGATTGGTTTCTAGA
TTTGAAACGCTTGGGTGTAACTTTATTAAAAGGGCGTGAAGAAAAGAAAG
GGGCGTTAGAATTGATTAAAGAGAAATTGTTTGGTGGCTACTTCAAGTCT
ACTCATTATGGACACACATTCGAAGTGATATCCAAACAAAACGCTGGAAA
TTTGGCTTACACATCACAAGGGTTATGGCCACACGTTGATCTACCCCATA
TCCAAGAAATGCCTGGAATTCAAGCTTTACATTGTATCGTACAAACACAA
TCGCATGGCGGAGAGTCCACGCTAGTAGATGGATTCCAGGCTGCACAACA
ACTCAAAGACATGGATCCACACTTATTCGATTTTCTTACTAAATACAAAG
TTCGGTACCGTGATATTGGCTCAGATTATTTCGGACAATTTGAAACGTTC
TGTGAAAGACCTATCATTGATTTTTCAGGAGACCGCTACCATGGTATTTA
CCACATCAACTTTCAAAGAGATTACGCCAACAGAGGCTCTGTGGAAGAAG
TCAAAACATTCTACAAAGCGTTACGACAGTTCACTGGCCTACTCATACAT
CCTGAAAACATTTTCCAATTCAAGTTGAAACCAGGTGACGTCATAGTTTT
CGACAATCAGCGAGTTTTACATGGACGAACAGCTTTCGATGCATCACCTG
TCACACTCATTGAAAATGAAGTCGAAGAACAAAATGAGGAGAAAATCACC
AGACATTTACAAGGCTGTTATTTTGACTGGGATCAAATATTCTGGAGAAT
AAGACCTGTTAAAAGACGAGTTGAAGCTGAAAGGAGGAAACCTGTTCAAT
AGCGACCATGAAATGTGTCAAGTGTACATtggaaaatttctgaattcaca
gctttaaaaaatttaaaacgttAAGGAAAAACAATGGGGAAAACTTGATT
AGATTATAAAACCTAACCTgggtttcttttttcaaaaacttttgaaatat
ctatCACTCAAAATTAAATCGTGGTTATCCCCCGGGGAAGGGGAGGGGGC
A
Run BLAST on NCBI

protein sequence of TCONS_00014641-protein

>TCONS_00014641-protein ID=TCONS_00014641-protein|Name=TCONS_00014641-protein|organism=Clytia hemisphaerica|type=polypeptide|length=460bp
MSLFLDNKMRRVRRSLATLAKIKRKDFRTATTTPPLLNKPSEYKTRRLIS
TSHRGLYAPSVIENNENLSLKVSWDNGEESEFANIFLRDQCQCPSCFKVE
SYNRLLEPYTIPLDVKPKNIEITQNSINISWTDEHFSSYPFEYLQNIQKG
LDDDVRYLEPIMWKSGYFKKNGFPTYDLSDLIENESAMLDWFLDLKRLGV
TLLKGREEKKGALELIKEKLFGGYFKSTHYGHTFEVISKQNAGNLAYTSQ
GLWPHVDLPHIQEMPGIQALHCIVQTQSHGGESTLVDGFQAAQQLKDMDP
HLFDFLTKYKVRYRDIGSDYFGQFETFCERPIIDFSGDRYHGIYHINFQR
DYANRGSVEEVKTFYKALRQFTGLLIHPENIFQFKLKPGDVIVFDNQRVL
HGRTAFDASPVTLIENEVEEQNEEKITRHLQGCYFDWDQIFWRIRPVKRR
VEAERRKPVQ
Run BLAST on NCBI

transcript from alignment at sc0000191:446162..450848-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014641 ID=TCONS_00014641|Name=TCONS_00014641|organism=Clytia hemisphaerica|type=transcript|length=4687bp|location=Sequence derived from alignment at sc0000191:446162..450848- (Clytia hemisphaerica)
NTCGTGATCATGGACTCGTACTAATAATTAGAGTTAGATAAATTATTTCA
TTTTGCCAAAATAATTAATTCGTACTAATTAGAGGACGGATTAAATTAGA
AGAATGACTGAATATTTCAATGAGTCTTTTCTTAGATAACAAAATGAGGC
GTGTAAGAAGATCTTTGGCAACCCTAGCAAAGATCAAGAGAAAAGATTTT
AGAACAGCAACGACCACACCTCCACTATTGAATAAACCATCGGAATACAA
AACCCGACGTCTGATCTCAACTTCGCATCGTGGCTTATACGCACCATCGG
TTATCGAAAACAACGAGAATCTTTCCCTCAAAGTTTCTTGGGACAATGGA
GAAGAATCAGAATTTGCAAATATTTTCCTCAGAGATCAATGTCAATGCCC
ATCATGTTTTAAAGTCGAATCATACAATCGATTATTGGAGCCATATACTA
TACCTTTGGACGTCAAACCCAAAAACATTGAAATCACTCAAAACTCTATC
AATATTTCCTGGACAGATGAACATTTTAGTTCCTACCCGTTTGAGTATTT
ACAAAACATTCAGAAAGGATTAGATGATGATGTTCGATACTTAGAACCGA
TAATGTGGAAATCGGGTTATTTCAAGAAAAACGGATTTCCAACGTATGAT
TTGTCGGATTTGATTGAAAACGAAAGTGCCATGTTAGATTGGTTTCTAGA
TTTGAAACGCTTGGGTGTAACTTTATTAAAAGGGCGTGAAGAAAAGAAAG
GGGCGTTAGAATTGATTAAAGAGAAATTGTTTGGTGGCTACTTCAAGTCT
ACTCATTATGGGTGAGTTGGTTTTCTGTGTGAATATTTCAGCTAGACAGG
TTCATTTTGAACTGAAATTTCTCCGTGCCTACCGATGGGTGATATAGCAT
TTCTGTTGCTAAGCGAAGTCCACATTCGAGATACCGCTACTAGCACCAAA
TTTTATCTTTCTCAGAAATTTAACCTGTGGCGGAGGACTATAACAACTTG
ACTGTTCATATCTACAACTGATTGATGTCTACATTGAAGAAGTAGCCCAA
GTTTTCGGGCTCTAAACATTCGATTTTTTGACGTCACTTTGAAGTTTCGA
AGCTCCTGCTGTAGCGAAAATATCGAATTTGCGTCAATGCACTTGAAAGG
CTTCTGTTTTGCGAAAATCATCAAAGCGTAGCTCACTAAGAAACGGGATC
AAAAATCCCGGTGTTTGGTGAGGTGCTCACTAATCATGAGTGATGCAAAT
TTGTTTGAAGGCAGATTTTTTAACTCAAAGGACATTAAAAAATTGTTAGA
GCTATAAAGGTACAAGTTATACGGACTCCACTACACACGTATACCCTCAA
TCAACATTAAAACCAATAGGCTAACAGACTTTCATTACCTCTAGACACAC
ATTCGAAGTGATATCCAAACAAAACGCTGGAAATTTGGCTTACACATCAC
AAGGGTTATGGCCACACGTTGATCTACCCCATATCCAAGAAATGCCTGGA
GTAAGTTTTATCAAATATATTTTATTTTTTGTAATTACCTTTGCATGGTA
TTAAGGGTCACCTTTTCAGCAAAAATCAGTCTCTCTAAAGGTCGGTTTTC
GGAGGTCCCGTCCCCTCATTCGCCAACCCTAGTGCCCCCCCCCCGGGCTC
AGATCTCAAAGTGCCTTATCATACTCAACAATTTACCTTTAACTTTTCTG
CAAGACACTGAGGGCTTCTGCTAAGCCTAAAACACGAAAAAGTGGAAATG
TTTTCAAGACAAGCTACCAGACAATTAATTCATCAAACTCGAACCAGTCC
CTTAGTCCACTTTTTATGTTTCTGATAGCGCTCACGAAAGTGTCACGTGA
TCACATGGTGGTACAAATGGCAAATACTCCATTGATAATTCATTGCCTTT
TTTAACAATATTTAGATTCAAGCTTTACATTGTATCGTACAAACACAATC
GCATGGCGGAGAGTCCACGCTAGTAGATGGATTCCAGGCTGCACAACAAC
TCAAAGACATGGATCCACACTTATTCGATTTTCTTACTAAATACAAAGTT
CGGTACCGTGATATTGGCTCAGATTATTTCGGACAATTTGAAACGTTCTG
TGAAAGACCTATCATTGAGTAAGACTTCTACATCGCCTCTGCGCTGCATC
ATTCTATGTCGCCGTGTCAATTCAAAACAGACTTAAGTCCATTTTTTCGA
AAATTGACTTAAGACCATAACCCCCTATTTTAGCATGCACGCTTTCCAAA
AACGGCCTTAAGTCCACAGAATTCTAATGGGNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGTAGCCTTAAG
TCCAACACATCTCAACCTTTAAAGTCAATTATCTCAAAATGGAAAAAATG
GACTTAAGGCTGTCTTGAATTGACACGGCGATGTAGACATCCTTGTGATA
TACAAAGCCTACGATCCTGTATATGATTTTATTTGTGTGTCAAATCGTAC
ACCTCTGTGTCATTTTTGGCTATGCCAAACTCAATACTAAAACCCCACGT
AGCATTTCATTAGACCCAATTCTAAAACCCCGTGTATTATTCTGTCTCAA
TATTCACTATAGTACTTGCAGTCTTGAAAAATGGTCTACATCTTTCGAAA
GAGTTGGCAGTAGAGAGAGAAACGTGTGAAAGAATAAAACCTTTTCTCCT
TTCAGTTTTTCAGGAGACCGCTACCATGGTATTTACCACATCAACTTTCA
AAGAGATTACGCCAACAGAGGCTCTGTGGAAGAAGTCAAAACATTCTACA
AAGCGTTACGACAGTTCACTGGCCTACTCATACATCCTGAAAACATTTTC
CAATTCAAGTTGAAACCAGGTTAGACGTGTAGTCAAGAAAGTAATGTATT
TGCGAATGAATTTTAAACTTCAGAAATCTTTTTGTACCGGGCCTTCTTCA
AGAAAATATTTTTCTGAACGTTAATTGCTAATATTATTCAACCGAAAATT
CCCATTCTTTGATACTATTTTTTGTCTATGAAAATATTACGGGATTGCGA
TTTGATTTTAAAAGAAATCCCGCTTTGACCACCGCAATGGTGGAATATTA
ACAAAAAAACACACACAATCCAACTCAGCTTTGCTAATGGCTCATATCTC
TTGTTTAGGCTGCTTGCACATCCACTAACGGATTCATGCTCCTTGTATAT
ACTACCTGCGGCTCTGTAGCTGTCTACGATGCAGACTAGGTCATAAACAT
ATAAACTTTAGTAGGAGTATCCTTCGAGTCTTTTAAAGGAGCTTGAGTCA
CAAGTTTGAGTTATACATACAGTATGCAAGATGATGTCTCAGTGCGACTT
CATTCCCGTCTTTTCCAGGCTTTATTTATGTTACTGATGGACGCCAGTGA
ATTTATCTGGCGCTATCAGCAAGCTTAAAAAAGTCGATAATACGCGAGGA
GCGTGGTAGGTCTGTAATTTTACCGCCGAGAACGTAAATCCTTATTGTAT
ACAGTTGAACTCATGTAATTCGAACTCCTATAATTCGAAAACTTGCTTAA
TTCAAACCTTACAAGAAAACTCCTATAATTCGAACCCATGTAATTCGAAA
AATCATGTAAATCGAACAGATTTTCTAATCCCATCAAGAAATTTTAATCA
TGTAATTCGAGTTTTCGAACTTTTCGAGTTTTTGAAGCTGACAAACTCGA
CATTTTGTCGATCCGCCCCCATCGCAAAATGAGATTGACGACGCGATCAA
GACTCTCAAAAAGATGACCCTTTTCGAATCATCGAACGTCATCCCACTGA
TTCAGAAGATCTCCGAAGAGATTTAAAAGAAACAGAAAATGAAACAATCA
ACAAAGACTTTTTTGAAAAATTATGAATATAGTATTTCATTATTCTAGCT
CGAAAATACAAAAAAAAATGTTCAAAAGTAAACCTGGGAAAGACTTTTTT
CGTCGAATTAGGTCAAAAATACAAAAAGTCCTCATCTAGTTCGAAACTCA
TGTAATTCGAACAAAATTCTCGGTCCCTTGAGAATTCGAATTACATGAGT
TCAACTATATTACTTAACAGGTGACGTCATAGTTTTCGACAATCAGCGAG
TTTTACATGGACGAACAGCTTTCGATGCATCACCTGTCACACTCATTGAA
AATGAAGTCGAAGAACAAAATGAGGAGAAAATCACCAGACATTTACAAGG
CTGTTATTTTGACTGGGATCAAATATTCTGGAGAATAAGACCTGTTAAAA
GACGAGTTGAAGCTGAAAGGAGGAAACCTGTTCAATAGCGACCATGAAAT
GTGTCAAGTGTACATTGGAAAATTTCTGAATTCACAGCTTTAAAAAATTT
AAAACGTTAAGGAAAAACAATGGGGAAAACTTGATTAGATTATAAAACCT
AACCTGGGTTTCTTTTTTCAAAAACTTTTGAAATATCTATCACTCAAAAT
TAAATCGTGGTTATCCCCCGGGGAAGGGGAGGGGGCA

Coding sequence (CDS) from alignment at sc0000191:446162..450848-

>TCONS_00014641 ID=TCONS_00014641|Name=TCONS_00014641|organism=Clytia hemisphaerica|type=CDS|length=6915bp|location=Sequence derived from alignment at sc0000191:446162..450848- (Clytia hemisphaerica)
GTGACGTCATAGTTTTCGACAATCAGCGAGTTTTACATGGACGAACAGCT
TTCGATGCATCACCTGTCACACTCATTGAAAATGAAGTCGAAGAACAAAA
TGAGGAGAAAATCACCAGACATTTACAAGGCTGTTATTTTGACTGGGATC
AAATATTCTGGAGAATAAGACCTGTTAAAAGACGAGTTGAAGCTGAAAGG
AGGAAACCTGTTCAATAGTTTTTCAGGAGACCGCTACCATGGTATTTACC
ACATCAACTTTCAAAGAGATTACGCCAACAGAGGCTCTGTGGAAGAAGTC
AAAACATTCTACAAAGCGTTACGACAGTTCACTGGCCTACTCATACATCC
TGAAAACATTTTCCAATTCAAGTTGAAACCAGATTCAAGCTTTACATTGT
ATCGTACAAACACAATCGCATGGCGGAGAGTCCACGCTAGTAGATGGATT
CCAGGCTGCACAACAACTCAAAGACATGGATCCACACTTATTCGATTTTC
TTACTAAATACAAAGTTCGGTACCGTGATATTGGCTCAGATTATTTCGGA
CAATTTGAAACGTTCTGTGAAAGACCTATCATTGAACACACATTCGAAGT
GATATCCAAACAAAACGCTGGAAATTTGGCTTACACATCACAAGGGTTAT
GGCCACACGTTGATCTACCCCATATCCAAGAAATGCCTGGAATGAGTCTT
TTCTTAGATAACAAAATGAGGCGTGTAAGAAGATCTTTGGCAACCCTAGC
AAAGATCAAGAGAAAAGATTTTAGAACAGCAACGACCACACCTCCACTAT
TGAATAAACCATCGGAATACAAAACCCGACGTCTGATCTCAACTTCGCAT
CGTGGCTTATACGCACCATCGGTTATCGAAAACAACGAGAATCTTTCCCT
CAAAGTTTCTTGGGACAATGGAGAAGAATCAGAATTTGCAAATATTTTCC
TCAGAGATCAATGTCAATGCCCATCATGTTTTAAAGTCGAATCATACAAT
CGATTATTGGAGCCATATACTATACCTTTGGACGTCAAACCCAAAAACAT
TGAAATCACTCAAAACTCTATCAATATTTCCTGGACAGATGAACATTTTA
GTTCCTACCCGTTTGAGTATTTACAAAACATTCAGAAAGGATTAGATGAT
GATGTTCGATACTTAGAACCGATAATGTGGAAATCGGGTTATTTCAAGAA
AAACGGATTTCCAACGTATGATTTGTCGGATTTGATTGAAAACGAAAGTG
CCATGTTAGATTGGTTTCTAGATTTGAAACGCTTGGGTGTAACTTTATTA
AAAGGGCGTGAAGAAAAGAAAGGGGCGTTAGAATTGATTAAAGAGAAATT
GTTTGGTGGCTACTTCAAGTCTACTCATTATGGGTGACGTCATAGTTTTC
GACAATCAGCGAGTTTTACATGGACGAACAGCTTTCGATGCATCACCTGT
CACACTCATTGAAAATGAAGTCGAAGAACAAAATGAGGAGAAAATCACCA
GACATTTACAAGGCTGTTATTTTGACTGGGATCAAATATTCTGGAGAATA
AGACCTGTTAAAAGACGAGTTGAAGCTGAAAGGAGGAAACCTGTTCAATA
GTTTTTCAGGAGACCGCTACCATGGTATTTACCACATCAACTTTCAAAGA
GATTACGCCAACAGAGGCTCTGTGGAAGAAGTCAAAACATTCTACAAAGC
GTTACGACAGTTCACTGGCCTACTCATACATCCTGAAAACATTTTCCAAT
TCAAGTTGAAACCAGATTCAAGCTTTACATTGTATCGTACAAACACAATC
GCATGGCGGAGAGTCCACGCTAGTAGATGGATTCCAGGCTGCACAACAAC
TCAAAGACATGGATCCACACTTATTCGATTTTCTTACTAAATACAAAGTT
CGGTACCGTGATATTGGCTCAGATTATTTCGGACAATTTGAAACGTTCTG
TGAAAGACCTATCATTGAACACACATTCGAAGTGATATCCAAACAAAACG
CTGGAAATTTGGCTTACACATCACAAGGGTTATGGCCACACGTTGATCTA
CCCCATATCCAAGAAATGCCTGGAATGAGTCTTTTCTTAGATAACAAAAT
GAGGCGTGTAAGAAGATCTTTGGCAACCCTAGCAAAGATCAAGAGAAAAG
ATTTTAGAACAGCAACGACCACACCTCCACTATTGAATAAACCATCGGAA
TACAAAACCCGACGTCTGATCTCAACTTCGCATCGTGGCTTATACGCACC
ATCGGTTATCGAAAACAACGAGAATCTTTCCCTCAAAGTTTCTTGGGACA
ATGGAGAAGAATCAGAATTTGCAAATATTTTCCTCAGAGATCAATGTCAA
TGCCCATCATGTTTTAAAGTCGAATCATACAATCGATTATTGGAGCCATA
TACTATACCTTTGGACGTCAAACCCAAAAACATTGAAATCACTCAAAACT
CTATCAATATTTCCTGGACAGATGAACATTTTAGTTCCTACCCGTTTGAG
TATTTACAAAACATTCAGAAAGGATTAGATGATGATGTTCGATACTTAGA
ACCGATAATGTGGAAATCGGGTTATTTCAAGAAAAACGGATTTCCAACGT
ATGATTTGTCGGATTTGATTGAAAACGAAAGTGCCATGTTAGATTGGTTT
CTAGATTTGAAACGCTTGGGTGTAACTTTATTAAAAGGGCGTGAAGAAAA
GAAAGGGGCGTTAGAATTGATTAAAGAGAAATTGTTTGGTGGCTACTTCA
AGTCTACTCATTATGGGTGACGTCATAGTTTTCGACAATCAGCGAGTTTT
ACATGGACGAACAGCTTTCGATGCATCACCTGTCACACTCATTGAAAATG
AAGTCGAAGAACAAAATGAGGAGAAAATCACCAGACATTTACAAGGCTGT
TATTTTGACTGGGATCAAATATTCTGGAGAATAAGACCTGTTAAAAGACG
AGTTGAAGCTGAAAGGAGGAAACCTGTTCAATAGTTTTTCAGGAGACCGC
TACCATGGTATTTACCACATCAACTTTCAAAGAGATTACGCCAACAGAGG
CTCTGTGGAAGAAGTCAAAACATTCTACAAAGCGTTACGACAGTTCACTG
GCCTACTCATACATCCTGAAAACATTTTCCAATTCAAGTTGAAACCAGAT
TCAAGCTTTACATTGTATCGTACAAACACAATCGCATGGCGGAGAGTCCA
CGCTAGTAGATGGATTCCAGGCTGCACAACAACTCAAAGACATGGATCCA
CACTTATTCGATTTTCTTACTAAATACAAAGTTCGGTACCGTGATATTGG
CTCAGATTATTTCGGACAATTTGAAACGTTCTGTGAAAGACCTATCATTG
AACACACATTCGAAGTGATATCCAAACAAAACGCTGGAAATTTGGCTTAC
ACATCACAAGGGTTATGGCCACACGTTGATCTACCCCATATCCAAGAAAT
GCCTGGAATGAGTCTTTTCTTAGATAACAAAATGAGGCGTGTAAGAAGAT
CTTTGGCAACCCTAGCAAAGATCAAGAGAAAAGATTTTAGAACAGCAACG
ACCACACCTCCACTATTGAATAAACCATCGGAATACAAAACCCGACGTCT
GATCTCAACTTCGCATCGTGGCTTATACGCACCATCGGTTATCGAAAACA
ACGAGAATCTTTCCCTCAAAGTTTCTTGGGACAATGGAGAAGAATCAGAA
TTTGCAAATATTTTCCTCAGAGATCAATGTCAATGCCCATCATGTTTTAA
AGTCGAATCATACAATCGATTATTGGAGCCATATACTATACCTTTGGACG
TCAAACCCAAAAACATTGAAATCACTCAAAACTCTATCAATATTTCCTGG
ACAGATGAACATTTTAGTTCCTACCCGTTTGAGTATTTACAAAACATTCA
GAAAGGATTAGATGATGATGTTCGATACTTAGAACCGATAATGTGGAAAT
CGGGTTATTTCAAGAAAAACGGATTTCCAACGTATGATTTGTCGGATTTG
ATTGAAAACGAAAGTGCCATGTTAGATTGGTTTCTAGATTTGAAACGCTT
GGGTGTAACTTTATTAAAAGGGCGTGAAGAAAAGAAAGGGGCGTTAGAAT
TGATTAAAGAGAAATTGTTTGGTGGCTACTTCAAGTCTACTCATTATGGG
TGACGTCATAGTTTTCGACAATCAGCGAGTTTTACATGGACGAACAGCTT
TCGATGCATCACCTGTCACACTCATTGAAAATGAAGTCGAAGAACAAAAT
GAGGAGAAAATCACCAGACATTTACAAGGCTGTTATTTTGACTGGGATCA
AATATTCTGGAGAATAAGACCTGTTAAAAGACGAGTTGAAGCTGAAAGGA
GGAAACCTGTTCAATAGTTTTTCAGGAGACCGCTACCATGGTATTTACCA
CATCAACTTTCAAAGAGATTACGCCAACAGAGGCTCTGTGGAAGAAGTCA
AAACATTCTACAAAGCGTTACGACAGTTCACTGGCCTACTCATACATCCT
GAAAACATTTTCCAATTCAAGTTGAAACCAGATTCAAGCTTTACATTGTA
TCGTACAAACACAATCGCATGGCGGAGAGTCCACGCTAGTAGATGGATTC
CAGGCTGCACAACAACTCAAAGACATGGATCCACACTTATTCGATTTTCT
TACTAAATACAAAGTTCGGTACCGTGATATTGGCTCAGATTATTTCGGAC
AATTTGAAACGTTCTGTGAAAGACCTATCATTGAACACACATTCGAAGTG
ATATCCAAACAAAACGCTGGAAATTTGGCTTACACATCACAAGGGTTATG
GCCACACGTTGATCTACCCCATATCCAAGAAATGCCTGGAATGAGTCTTT
TCTTAGATAACAAAATGAGGCGTGTAAGAAGATCTTTGGCAACCCTAGCA
AAGATCAAGAGAAAAGATTTTAGAACAGCAACGACCACACCTCCACTATT
GAATAAACCATCGGAATACAAAACCCGACGTCTGATCTCAACTTCGCATC
GTGGCTTATACGCACCATCGGTTATCGAAAACAACGAGAATCTTTCCCTC
AAAGTTTCTTGGGACAATGGAGAAGAATCAGAATTTGCAAATATTTTCCT
CAGAGATCAATGTCAATGCCCATCATGTTTTAAAGTCGAATCATACAATC
GATTATTGGAGCCATATACTATACCTTTGGACGTCAAACCCAAAAACATT
GAAATCACTCAAAACTCTATCAATATTTCCTGGACAGATGAACATTTTAG
TTCCTACCCGTTTGAGTATTTACAAAACATTCAGAAAGGATTAGATGATG
ATGTTCGATACTTAGAACCGATAATGTGGAAATCGGGTTATTTCAAGAAA
AACGGATTTCCAACGTATGATTTGTCGGATTTGATTGAAAACGAAAGTGC
CATGTTAGATTGGTTTCTAGATTTGAAACGCTTGGGTGTAACTTTATTAA
AAGGGCGTGAAGAAAAGAAAGGGGCGTTAGAATTGATTAAAGAGAAATTG
TTTGGTGGCTACTTCAAGTCTACTCATTATGGGTGACGTCATAGTTTTCG
ACAATCAGCGAGTTTTACATGGACGAACAGCTTTCGATGCATCACCTGTC
ACACTCATTGAAAATGAAGTCGAAGAACAAAATGAGGAGAAAATCACCAG
ACATTTACAAGGCTGTTATTTTGACTGGGATCAAATATTCTGGAGAATAA
GACCTGTTAAAAGACGAGTTGAAGCTGAAAGGAGGAAACCTGTTCAATAG
TTTTTCAGGAGACCGCTACCATGGTATTTACCACATCAACTTTCAAAGAG
ATTACGCCAACAGAGGCTCTGTGGAAGAAGTCAAAACATTCTACAAAGCG
TTACGACAGTTCACTGGCCTACTCATACATCCTGAAAACATTTTCCAATT
CAAGTTGAAACCAGATTCAAGCTTTACATTGTATCGTACAAACACAATCG
CATGGCGGAGAGTCCACGCTAGTAGATGGATTCCAGGCTGCACAACAACT
CAAAGACATGGATCCACACTTATTCGATTTTCTTACTAAATACAAAGTTC
GGTACCGTGATATTGGCTCAGATTATTTCGGACAATTTGAAACGTTCTGT
GAAAGACCTATCATTGAACACACATTCGAAGTGATATCCAAACAAAACGC
TGGAAATTTGGCTTACACATCACAAGGGTTATGGCCACACGTTGATCTAC
CCCATATCCAAGAAATGCCTGGAATGAGTCTTTTCTTAGATAACAAAATG
AGGCGTGTAAGAAGATCTTTGGCAACCCTAGCAAAGATCAAGAGAAAAGA
TTTTAGAACAGCAACGACCACACCTCCACTATTGAATAAACCATCGGAAT
ACAAAACCCGACGTCTGATCTCAACTTCGCATCGTGGCTTATACGCACCA
TCGGTTATCGAAAACAACGAGAATCTTTCCCTCAAAGTTTCTTGGGACAA
TGGAGAAGAATCAGAATTTGCAAATATTTTCCTCAGAGATCAATGTCAAT
GCCCATCATGTTTTAAAGTCGAATCATACAATCGATTATTGGAGCCATAT
ACTATACCTTTGGACGTCAAACCCAAAAACATTGAAATCACTCAAAACTC
TATCAATATTTCCTGGACAGATGAACATTTTAGTTCCTACCCGTTTGAGT
ATTTACAAAACATTCAGAAAGGATTAGATGATGATGTTCGATACTTAGAA
CCGATAATGTGGAAATCGGGTTATTTCAAGAAAAACGGATTTCCAACGTA
TGATTTGTCGGATTTGATTGAAAACGAAAGTGCCATGTTAGATTGGTTTC
TAGATTTGAAACGCTTGGGTGTAACTTTATTAAAAGGGCGTGAAGAAAAG
AAAGGGGCGTTAGAATTGATTAAAGAGAAATTGTTTGGTGGCTACTTCAA
GTCTACTCATTATGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008191XLOC_008191Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014641-exon-sc0000191-1575043694:450038..450848TCONS_00014641-exon-sc0000191-1575043694:450038..450848Clytia hemisphaericaexon
TCONS_00014641-exon-sc0000191-1575043694:449349..449454TCONS_00014641-exon-sc0000191-1575043694:449349..449454Clytia hemisphaericaexon
TCONS_00014641-exon-sc0000191-1575043694:448731..448933TCONS_00014641-exon-sc0000191-1575043694:448731..448933Clytia hemisphaericaexon
TCONS_00014641-exon-sc0000191-1575043694:447780..447943TCONS_00014641-exon-sc0000191-1575043694:447780..447943Clytia hemisphaericaexon
TCONS_00014641-exon-sc0000191-1575043694:446162..446578TCONS_00014641-exon-sc0000191-1575043694:446162..446578Clytia hemisphaericaexon
TCONS_00014641-exon-sc0000191-1510915933:450038..450848TCONS_00014641-exon-sc0000191-1510915933:450038..450848Clytia hemisphaericaexon
TCONS_00014641-exon-sc0000191-1510915933:449349..449454TCONS_00014641-exon-sc0000191-1510915933:449349..449454Clytia hemisphaericaexon
TCONS_00014641-exon-sc0000191-1510915933:448731..448933TCONS_00014641-exon-sc0000191-1510915933:448731..448933Clytia hemisphaericaexon
TCONS_00014641-exon-sc0000191-1510915933:447780..447943TCONS_00014641-exon-sc0000191-1510915933:447780..447943Clytia hemisphaericaexon
TCONS_00014641-exon-sc0000191-1510915933:446162..446578TCONS_00014641-exon-sc0000191-1510915933:446162..446578Clytia hemisphaericaexon
TCONS_00014641-exon-sc0000191-1491911889:450038..450848TCONS_00014641-exon-sc0000191-1491911889:450038..450848Clytia hemisphaericaexon
TCONS_00014641-exon-sc0000191-1491911889:449349..449454TCONS_00014641-exon-sc0000191-1491911889:449349..449454Clytia hemisphaericaexon
TCONS_00014641-exon-sc0000191-1491911889:448731..448933TCONS_00014641-exon-sc0000191-1491911889:448731..448933Clytia hemisphaericaexon
TCONS_00014641-exon-sc0000191-1491911889:447780..447943TCONS_00014641-exon-sc0000191-1491911889:447780..447943Clytia hemisphaericaexon
TCONS_00014641-exon-sc0000191-1491911889:446162..446578TCONS_00014641-exon-sc0000191-1491911889:446162..446578Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014641-proteinTCONS_00014641-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000191supercontigsc0000191:446162..450848 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0246145	0.0238112	0.14261	0.0267091	0.273599	0.217683	1.64172	1.46756	0.900208	0.960124	7.48428	1.48855	1.5476	1.5756	1.10789	1.60725	0.803995	1.23556	0.171317	1.3628	0.435266	0.520043	0.342483	0.206287	1.03129	1.26058	0.773052	0.361049	10.7595	7.55335
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR010376DUF971
IPR003819TauD/TfdA-like
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0016491 oxidoreductase activity
Blast
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BLAST of TCONS_00014641 vs. Swiss-Prot (Human)
Match: BODG (Gamma-butyrobetaine dioxygenase OS=Homo sapiens GN=BBOX1 PE=1 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 7.666e-65
Identity = 131/392 (33.42%), Postives = 206/392 (52.55%), Query Frame = 3 
Query:  327 LKVSWDNGEESEFANIFLRDQCQCPSCFKVESYNRLLEPYTIPLDVKPKNIEITQNSINISWTDEHFSSYPFEYLQ------NIQKGLDDDVRYLEPIMWKSGYFKKNGFPTYDLSDLIENESAMLDWFLDLKRLGVTLLKGREEKKGALELIKEKLFGGYFKSTHYGHTFEVISKQNAGNLAYTSQGLWPHVDLPHIQEMPGIQALHCIVQTQSHGGESTLVDGFQAAQQLKDMDPHLFDFLTKYKVRYRDIGSDYFGQFETFCERPIIDFSGDRYHGIYHINFQ---RDYANRGSVEEVKTFYKALRQFTGLLIHPENIFQFKLKPGDVIVFDNQRVLHGRTAFDASPVTLIXXXXXXXXXXKITRHLQGCYFDWDQIFWRIRPVKRRVE 1475
            +++ W + EES +  ++LRD C C  C+   +  R L    + +++  K +   +  + I+W DEH+S +  ++L+        +  L  ++ + E   W S    +   PT D  D++  +     W   LK++G+  L G  +K G +  + +++  G+   T YGHT++V  K +A N+AYT+  L  H D P +   PG+Q LHCI QT + GG+S +VDGF   Q+LK  +P  F  L+   V + DIG DY   F    +  II+   D    +  INF    RD      VE V+ FY AL++F  L+   E+ F FK+ PGDVI FDN R+LHGR +++A                +I+RHL+G Y DWD +  R+R +++RVE
Sbjct:   17 MQILWYDEEESLYPAVWLRDNCPCSDCYLDSAKARKLLVEALDVNIGIKGLIFDRKKVYITWPDEHYSEFQADWLKKRCFSKQARAKLQRELFFPECQYWGS----ELQLPTLDFEDVLRYDEHAYKWLSTLKKVGIVRLTGASDKPGEVSKLGKRM--GFLYLTFYGHTWQVQDKIDANNVAYTTGKLSFHTDYPALHHPPGVQLLHCIKQTVT-GGDSEIVDGFNVCQKLKKNNPQAFQILSSTFVDFTDIGVDY-CDFSVQSKHKIIEL--DDKGQVVRINFNNATRDTIFDVPVERVQPFYAALKEFVDLMNSKESKFTFKMNPGDVITFDNWRLLHGRRSYEAG--------------TEISRHLEGAYADWDVVMSRLRILRQRVE 384
The following BLAST results are available for this feature:
BLAST of TCONS_00014641 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BODG7.666e-6533.42Gamma-butyrobetaine dioxygenase OS=Homo sapiens GN... [more]
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