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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014696 ID=TCONS_00014696|Name=TCONS_00014696|organism=Clytia hemisphaerica|type=transcript|length=1988bp
CTTGCAGAAAccattctgattggatgaataatCTACCAATAGAAATGCAC
GAAATGAAGATAACGGAAATAGCCATTCCAGGCTCCCACGACTCGGGAAC
TTATTCGTTGATGAAGACAAGTGATATTTTTATTGATGGCTCAAGTCATA
AGAATGACATCATCcttgattttttgaagtttcgaTCACAATATAAACAA
AACGGCCTGCTGGGAGAATTAATTTACAGATGGTCCATGACGCAAGATCT
TAACATCACAAGCCAGTTGTATTGTGGAGTGAGATACCTTGACCTTCGCA
TTGCCTTTGATCAAAAAAATGAAAGGTAGGCCTTTTTTCAGAAACCGAGA
AAAGATGTGCAACcacgttccctgcgtattatcagctttttgatgcttac
tgatagcgctagataatatttTCTGGCGTCAATCAGCAACGTAAATAAAA
CCTGAGATACACGAGGACGAGATTGCAAAATGATTTCTCCTTACGCAAAT
GGTCCCATTGTTTTTTCGAAAACCACCATGAAGTTGTGTTGAAGGGTGGG
TTTGTTTCTTTACGTTTGTGAAAAATATGGTCAGTTTATAGACAACGCAT
TTAATGTTATTCGTTTTCAGTCGAATCGTTCATGGTCTATTCGGGACAAC
ACTCCACGACATATTTACTCAGATCAAAGACTTCATCATAAAATACTCCA
AAGAAATCATCTTACTGGACTTGCAAAGTATGGCAACAAACCATGAAATC
AGCAAAGAGAATGCTCTAAAGAATGTTACAGATTTGTTACAAGATTATTT
TTCTGACCGTATCATATttgcagaaaacattcaaagTTATAAACTGAAAG
ATCTGTGGCAGCAAAACATTAGCGTTATTGTATTCAAGCGATCACGTGAC
AATAACAAAAAAGATTCGATTCTTCACGCGCATGCGTCAATTCGATCACC
ATTCGATTATAAACAATTCACGCAAACATGGTCATGGTTGCACTTCCTTG
ATTTAAATTATGCAAATAGAGGTAAACAAGGCACTGATACTTTCTATGTG
ACTCAAGGGATCATGCAGCCACACTGGATGGAAGTCGTGATCGCTGGCAT
TTCAGAAAATGCAACCTTGAGAAGTTGGGTGTCAAGTAAAGCGACACGAA
AAATAAGGGACTGGTTACACGGTAAACAGATTGGAAAAAATGGTATTAAT
ATAGTGATCGCTGACTTTGTAGAGTTTTCCAATTTCACAGACACAGTTCT
AGATTTAAACGCAGTCACCAATGTGAGAGGTCCTACATCTCGAAAAAGTG
GCTCAGTCTGTTACAGGTCCATCGATAACAATTTGTTATGGTTGCTCTTA
ATTATTTTCAtgttgttggaaagatattgagAAATAATGTGGACTGTGAT
TTGAAAGTAATTTAAACTGGCTAAAAATATATCATACCTTTATTTAACAA
TGCTACTAAGTGTTCTAAATataaaaatcgaagaaaattatTTGCTACGT
TTGTACCATTTAACATGCTTCTGTCTAAGTGAGGGCGTCCTGTATTTTTT
TGGCAAGTACAATCTTTTTCTCTTGTGTCTTGCAAACCTCTTTGTAATTT
CAGACTTCCCATAATTTCATTTGGACCACGAATCACGTTGCATTCCTTTC
TGAGAGTCATGCATACCGCCCTGAAATAGATCATTTGGGAGAGCGAAGGG
TTGGTTTTGAACGTCATGCATACCGCCCTGAACTTCATCATTAGGGAGGG
CGAAGGGCTGGTTTTGAACGTCATGCATACCGCCCTGAACTTCATTATTA
GGGAGGGCGAAGGGTTGACTTTGGATATCATGCATACCGCCCTGAACTTC
ATCATTAGGGAGGGCGAAGGGTTGACTTTGGGCGTCATGTATACCGCCCT
GTACTTCATCGTTTGGAAGTGGCGGGGAGGAATGCGATTCAATATTGTCC
ATGTGAAGCATCAAAGGCATGGGTTTGCGATAAGGTCC Run BLAST on NCBI transcript from alignment at sc0000197:282970..285712+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014696 ID=TCONS_00014696|Name=TCONS_00014696|organism=Clytia hemisphaerica|type=transcript|length=2743bp|location=Sequence derived from alignment at sc0000197:282970..285712+ (Clytia hemisphaerica)
CTTGCAGAAAccattctgattggatgaataatCTACCAATAGAAATGCAC
GAAATGAAGATAACGGAAATAGCCATTCCAGGCTCCCACGACTCGGGAAC
TTATTCGTTGATGAAGACAAGTGATATTTTTATTGATGGCTCAAGTCATA
AGGTAAGTAGAATTATTACTATATGCATCAACATATTAAAGTTTTCTtca
ctgtttttcttttcatctttaaAGGGCGTCAAGCCATGATATTCATTACA
TAATATTTTCTACGGAATCACCCCGGATTTTGCAAGTAGTGGAAATTTCA
ATTTACCAATACTGGAAAAAACCGTACAGTAGTgcttccgtagaaaacat
tacatcataaaTATCACATAAATCTTGcaaagaaataaattttttgaaat
aactttttcatGGCTTTTTTAACTCCCGTGGgagagggggtactagggca
aaatgggttacggggatgcgtAGATGTGATGACTCCCAGGTAGAGTcaca
aaaaaacaccaaaatagaaaaatcagtccctcgtagggtgccttttttgg
aaaatttggagaaaaagtagaaaatttgtcaaaattttggaatttcagtc
ccattcaggatcacttttttcgcaaatttcggcaaaatgtttgaaaaaac
gagtcccacgtaggttccattttttgaacctcagcggagcacccctgTCG
GTTGGCAAGGGTAGTATCCCCCCGGGTTTTAACTTCAGTTTATATTCAAC
AATCGATTTAAAACGATTACCGTCTGGTGTATAAATAAGAAAGTTTCAAA
actaaataaagcttttttgaCATAACTTAGTTTTTctcacaaacaaacaa
acaaacaagatgGTCTTGAAAATGATTAAATATTATAAAAACCCTTTTTC
CCTATAGAATGACATCATCcttgattttttgaagtttcgaTCACAATATA
AACAAAACGGCCTGCTGGGAGAATTAATTTACAGATGGTCCATGACGCAA
GATCTTAACATCACAAGCCAGTTGTATTGTGGAGTGAGATACCTTGACCT
TCGCATTGCCTTTGATCAAAAAAATGAAAGGTAGGCCTTTTTTCAGAAAC
CGAGAAAAGATGTGCAACcacgttccctgcgtattatcagctttttgatg
cttactgatagcgctagataatatttTCTGGCGTCAATCAGCAACGTAAA
TAAAACCTGAGATACACGAGGACGAGATTGCAAAATGATTTCTCCTTACG
CAAATGGTCCCATTGTTTTTTCGAAAACCACCATGAAGTTGTGTTGAAGG
GTGGGTTTGTTTCTTTACGTTTGTGAAAAATATGGTCAGTTTATAGACAA
CGCATTTAATGTTATTCGTTTTCAGTCGAATCGTTCATGGTCTATTCGGG
ACAACACTCCACGACATATTTACTCAGATCAAAGACTTCATCATAAAATA
CTCCAAAGAAATCATCTTACTGGACTTGCAAAGTATGGCAACAAACCATG
AAATCAGCAAAGAGAATGCTCTAAAGAATGTTACAGATTTGTTACAAGAT
TATTTTTCTGACCGTATCATATttgcagaaaacattcaaagTTATAAACT
GAAAGATCTGTGGCAGCAAAACATTAGCGTTATTGTATTCAAGCGATCAC
GTGACAATAACAAAAAAGATTCGATTCTTCACGCGCATGCGTCAATTCGA
TCACCATTCGATTATAAACAATTCACGCAAACATGGTCATGGTTGCACTT
CCTTGATTTAAATTATGCAAATAGAGGTAAACAAGGCACTGATACTTTCT
ATGTGACTCAAGGGATCATGCAGCCACACTGGATGGAAGTCGTGATCGCT
GGCATTTCAGAAAATGCAACCTTGAGAAGTTGGGTGTCAAGTAAAGCGAC
ACGAAAAATAAGGGACTGGTTACACGGTAAACAGATTGGAAAAAATGGTA
TTAATATAGTGATCGCTGACTTTGTAGAGTTTTCCAATTTCACAGACACA
GTTCTAGATTTAAACGCAGTCACCAATGTGAGAGGTCCTACATCTCGAAA
AAGTGGCTCAGTCTGTTACAGGTCCATCGATAACAATTTGTTATGGTTGC
TCTTAATTATTTTCAtgttgttggaaagatattgagAAATAATGTGGACT
GTGATTTGAAAGTAATTTAAACTGGCTAAAAATATATCATACCTTTATTT
AACAATGCTACTAAGTGTTCTAAATataaaaatcgaagaaaattatTTGC
TACGTTTGTACCATTTAACATGCTTCTGTCTAAGTGAGGGCGTCCTGTAT
TTTTTTGGCAAGTACAATCTTTTTCTCTTGTGTCTTGCAAACCTCTTTGT
AATTTCAGACTTCCCATAATTTCATTTGGACCACGAATCACGTTGCATTC
CTTTCTGAGAGTCATGCATACCGCCCTGAAATAGATCATTTGGGAGAGCG
AAGGGTTGGTTTTGAACGTCATGCATACCGCCCTGAACTTCATCATTAGG
GAGGGCGAAGGGCTGGTTTTGAACGTCATGCATACCGCCCTGAACTTCAT
TATTAGGGAGGGCGAAGGGTTGACTTTGGATATCATGCATACCGCCCTGA
ACTTCATCATTAGGGAGGGCGAAGGGTTGACTTTGGGCGTCATGTATACC
GCCCTGTACTTCATCGTTTGGAAGTGGCGGGGAGGAATGCGATTCAATAT
TGTCCATGTGAAGCATCAAAGGCATGGGTTTGCGATAAGGTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014696-exon-sc0000197-1491911889:282970..283121 | TCONS_00014696-exon-sc0000197-1491911889:282970..283121 | Clytia hemisphaerica | exon |
| TCONS_00014696-exon-sc0000197-1510915933:282970..283121 | TCONS_00014696-exon-sc0000197-1510915933:282970..283121 | Clytia hemisphaerica | exon |
| TCONS_00014696-exon-sc0000197-1575043694:282970..283121 | TCONS_00014696-exon-sc0000197-1575043694:282970..283121 | Clytia hemisphaerica | exon |
| TCONS_00014696-exon-sc0000197-1491911889:283877..285712 | TCONS_00014696-exon-sc0000197-1491911889:283877..285712 | Clytia hemisphaerica | exon |
| TCONS_00014696-exon-sc0000197-1510915933:283877..285712 | TCONS_00014696-exon-sc0000197-1510915933:283877..285712 | Clytia hemisphaerica | exon |
| TCONS_00014696-exon-sc0000197-1575043694:283877..285712 | TCONS_00014696-exon-sc0000197-1575043694:283877..285712 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000197 | supercontig | sc0000197:282970..285712 + |
Blast
BLAST of TCONS_00014696 vs. Swiss-Prot (Human)
Match: PLCX3 (PI-PLC X domain-containing protein 3 OS=Homo sapiens GN=PLCXD3 PE=2 SV=2) HSP 1 Score: 88.1965 bits (217), Expect = 7.703e-19 Identity = 57/222 (25.68%), Postives = 104/222 (46.85%), Query Frame = 1
Query: 628 VHGLFGTTLHDIFTQIKDFIIKYSKEIILLDLQSMATNHEISKENALKNVTDLLQDYFSDRIIFAENIQSYKLKDLWQQNISVIVFKRSRDNNKKDSILHAHASIRSPFDYKQFTQTWSW---------LHFLDLNYANRGKQGTDTFYVTQGIMQPHWMEVVIAGISENATLRSWVSSKATRKIRDWLHGKQIGKNGINIVIADFVEFSNFTDTVLDLNAV 1266
HGLF +++ +I F+ + KE++ LD + E + +L+D + +++ A Q LK LW+++ V+VF H+ ++ PF + W + FL + R K+G+ F+++Q ++ P V+ G++ LR ++ +A + W+ ++ G++GINIV ADFVE +F TV+ LN V
Sbjct: 113 AHGLFSAKVNEGLEEINAFLTDHHKEVVFLDFNHFYGMQKYHHEK----LVQMLKDIYGNKMCPAIFAQEVSLKYLWEKDYQVLVF------------YHSPVALEVPFLWPGQMMPAPWANTTDPEKLIQFLQASITERRKKGS--FFISQVVLTPK-ASTVVKGVASG--LRETITERALPAMMQWVRTQKPGESGINIVTADFVELGDFISTVIKLNYV 313
The following BLAST results are available for this feature:
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