TCONS_00014707 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00014707
Unique Name	TCONS_00014707
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1847

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000197:12978..17459-

transcript sequence

>TCONS_00014707 ID=TCONS_00014707|Name=TCONS_00014707|organism=Clytia hemisphaerica|type=transcript|length=1847bp
TTGTGGGAAACAAGATATACAAAGACTTGCCCATCCAACAGCTTGTATCT
TACATTGATTGGAAACCTTTCTTCGATATTTGGCAACTTCGTGGACGATA
TCCGAATCGTGGTTTcccaaaaatattcaaagataAAACTGTGGGCGAAG
AAGCACAACGGGTGTACAATGATGCACAAAGTATGCTGaataaaatcatt
tcaaataaatcaatgaaaGCGGTTGGTCAAGTCACATTCGTTGAAGCGAA
CAGTGTCGAAGATGATATTCATTTGTACCAAAGAAATGAAAACGGTGAAA
GGATACATTTCCAAACGTTCTATGGTATTAGACAACAGGCTGAAAAAGAG
ACGAAAGAGAAATCCTATATGTGTATTTCTGATTTCGTTGCTCCTCTGTG
TGCGAACAAAACAGATTATGTTGGCATGTTCGTTGTGTCTTGTCTTGGTG
CTGAAGAACTCGCAAAACAATACGAAGATTTATTTGACGATTACAGTTCC
ATCATGGTTAAAGCGATAGCTGATCGTTTAGCCGAAGCCTTTGCAGAGAA
ACTTCACGAAATGGTACGGCGTGATTTATGGGGATATAGTAATGAAGAAA
GTCTATCAGAGAGTGACCTACTCAAAGTCAAATACCAGGGCATTCGACCA
GCTCCCGGATACCCAACACAACCTGATCACTTAGAGAAACAAACAATGTG
GAAAATAATGGAAGCGGAAAAAAACATTTCCGTAGAATTGACCGAATCCT
TGGCCATGTTTCCGGCGGCTTCtgtatctggtctgtattttgcACATCCC
AAATCACATTATTTCGCAACTGGGAAAATCTGCAAAGACCAGGTTGAAGA
TTATGCTAATCGCAAGAAGAAACCAAtcaaagaaatcgaaacctgGTTGT
CACCTGTTCTGGCATACGAACCTGActgctgacatcagcatttaTTTTAG
AGTGGGGCTATTTCATTATTTAATTCGTGCTGAAGGAGTTATTTTGGAAT
CTCCCGTTATCAAAACGGGGGTGTAACTTGTTTGCAAGTTATTGAAGATT
GAAAGTAATGGGATAGAATTCTTGCCGGGatagacattttcataaattac
gtcacgaacatcacttgcctcgttttgaaattattgccatggtgattagc
TCCCAGCGGGTTTTAttaaactactttctatttataaaaaaaatcattta
atgtctcaagggacataatcactactgatcaccatggtaattgtttgaat
acgaggcaagcgatgttcgtgacgtaatttatgaaaaggtctattctcat
TTTATAAAACATGATTTCACTTTtggctttaatttttttgcactttttag
tttgtttagaagatttttttttataacaatttttaaatcATATTATGAAA
TAATATAACTTAGAACATGCTATTtgttaaaaatctttatttatcgTTTT
TTCGTGTTTACGTTTTGTTACCAGTTTACTACTTAGGCTATTCTGaattt
agtttttcctaatttttgaaaaaaattatagtaTTTATCTAACCTGAAAT
CAAATCACAATTGTTTTTTCTCGTTAAGTATTACACTCTGGTGAATTTGA
TGAAGACCCGCTTTGCTTAGGATGACCTCGTGACGGATAAAATAGAAGTT
TTCTCTGTGGTGTTGCAatggaatattttattttttttagactTGTAACA
AGATACTAACTTGTATGGAATTTCCTTGAGAGGGCTTTTTACCTCAAGGG
CTTTAGTAGTTCATTTTAGAGGCGTTTAGAGCTTTACTCTGTCTATTACA
CAACCTGTCATCTGATTTTCTGGGGTTTCGAATAATTTTTATTGAAC

Run BLAST on NCBI

transcript from alignment at sc0000197:12978..17459-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00014707 ID=TCONS_00014707|Name=TCONS_00014707|organism=Clytia hemisphaerica|type=transcript|length=4482bp|location=Sequence derived from alignment at sc0000197:12978..17459- (Clytia hemisphaerica)
TTGTGGGAAACAAGATATACAAAGACTTGCCCATCCAACAGCTTGTATCT
TACATTGATTGGAAACCTTTCTTCGATATTTGGCAACTTCGTGGACGATA
TCCGAATCGTGGTTTCCCAAAAATATTCAAAGATAAAACTGTGGGTGAGT
CTCTACTTTTCCTTCACAGAAAATATTTCTACTCTTGGTACTCATGTTAT
TATTACCTTCTGATTCCGTCTTTCTACGATCCTTCTACTGGTTCAGAAAC
AGCCAGTCAACCAGTTACAGCTAGTCTGTAACACCAGCCTGGAAACGACC
TCTTGAAAAACAAAAAGATATCTCTGGAAGTGAATCATTTTGTTTTGTGC
AATTCAATTTGACTTAAAATCCTATTTTTCCATAACCTTAGGCGAAGAAG
CACAACGGGTGTACAATGATGCACAAAGTATGCTGAATAAAATCATTTCA
AATAAATCAATGAAAGCGGTTGGTCAAGTCACATTCGTTGAAGCGAACAG
TGTTGAAGATGATATTCATTTATACCAAAGAAATGAAGACGGTGAAAGGA
TACATTCCGNTCACATTCGTTGAAGCGAACAGTGTCGAAGATGATATTCA
TTTGTACCAAAGAAATGAAAACGGTGAAAGGATACATTTCCAAACGTTCT
ATGGTATTAGACAACAGGTACGCTTAATGGACATTTTTCTTTTCCAACTG
TCGAAATGTATTGAGGCTATTGGTCTTTAGCGCTCTGCTTTGAACCGCTT
TGACCGCTTCCAGCACCGATGTTGTGAGTGAAGACCGACTAGACCTCGGA
AACATGTCCTATAAAAGAGATTACTGCCAAGGTTTAAAAACTTGTAGAAA
GACCTTCTTCTTAAGTTGCTTTATAGCTTCTTCAGCAAGAGAGTACTTGG
CCTGGAGGAAGCATTTTACACAATAAATTGAAGTCGAGATTAGAATTGTT
TGAAAGATCTTCCCAGTGTTTTCAATTTGCAAAGAAAATTGACTCGCAGT
GAGGTATTAGAATCTTAAAAAAACCAACTCTTTAGACATGTAGAATATTT
AGAATCCTTAATACCAAGGTCCTGATAACTTATGAGACACAATCAAATAC
ATTGTCTGTGCTCAATTCTTTATTGTTCTGCTTTTTACAGGCTGAAAAAG
AGACGAAAGAGAAATCCTATATGTGTATTTCTGATTTCGTTGCTCCTCTG
TGTGCGAACAAAACAGATTATGTTGGCATGTTCGTTGTGTCTTGTCTTGG
TGCTGAAGAACTCGCAAAACAGTAAGAACATTCGCTACTTTGCGATTCAA
AAAAGTTATGGCAAATTTTGGAGGTGCCCTAGACTTGCAGCAAGTCTGTT
GTTTATAAACAAATCGTTATAAATAATAAAACTAACGATGTCAGAAATGA
TATACCTCATCGGGGAAAAAACGAGGAAATATTTCGTCACCTAGAGGCAT
TCTCGTCACTTTTTCCCAAACCGAAATTTCAAATTCGTCAATTTTCCCCG
ACCAAATTTACAGCTTAGACATCTCCACCCAACTAAATTGCCCAAATGAA
ATGGTTCCCTTTACTAGCTCGAAAATAGATCTTGTAATTCGATGTTTAAT
GCACTAGTATCGGTTAATAAAGGTGTAAATATTTGGATTTGAATTTTGGT
TGGGGTATAAAATTTCGGGAATAAAAAAATCGGCGAAAAGTTTTATCGGG
TGACGATGTGGAAAATTTATTGCCCCCTTTTCAATTTTCATCGCTTTCCT
CCGATATTTTTCTCACATAAGGTAAATGAATGTAGATGGGCGCTCAGTGG
TCGAAAAAAATAGCAGAATTGAAGCTTGCTGCACTCTCATTTTTATCGCA
AGATAACAGGCGTCAGAGTATAAATGCCTGTTAAATTAAAAGTTGAATTG
AACAACGTTCTTTAAAGAAACAAGCTTGCTCACAAATATTTATCTACCCA
AAAAGCACCGATACGAATGTGTGTTTCTCTCTTTCAGATACGAAGATTTA
TTTGACGATTACAGTTCCATCATGGTTAAAGCGATAGCTGATCGTTTAGC
CGAAGTAAGTCATAGTTTTCACACTTGTCATGTATGAAGCGTGAGGGCTT
CTTTTGCCAAACACTTCTGAAAAGTTGATGTTGAAATTTTAATATTTTTG
GATGAAAGATTTATGACATATTAGTACATGACTCGTTATAACAATCGTGG
TTTTTTTCTTAAGTTACCTAAATAATTTCTGCCATTATGAGGCAAATCTT
CGAGTAATGGCGATTCAAAAATGGGCTCTTTCAGAAAAAAATTGAATATG
GGGGGGAGGATAAAACATTTTTTGGAAATTTATCTCCCGGACATTGTTAG
TTTCGACCGCCCCCCCCCCGGGCAGATCTCACCCACGGAAATGCATTAGT
TGCCCCCCTACCCGGACATTCAAAATTAACCCTAAGCAGACTTTTTGACT
TGCCAATTTTCCACTACTCCCCGAACAAAACATCCAATACATCCTCCACA
CCCCCCATGTACAAATATTTTATGGAAGAGCCCAATGGAGAATAACTTAA
CCAAACCCTCTATACTTTGCTTGATTTTCTCAAAGCTTCCCACACTTACT
GTGCGTGTCATTATGTACCATTGATCATCTTTGTTTTGTAGGCCTTTGCA
GAGAAACTTCACGAAATGGTACGGCGTGATTTATGGGGATATAGTAATGA
AGAAAGTCTATCAGAGAGTGACCTACTCAAAGTCAAATACCAGGTTTGTT
CCACTTTTATGCTATTTTTAGGTAAATATTTTTCTTTGGTTATAAAACGC
TAAAATGGCGCTCATAAAGAGATTTGTACGATAAGAACTTATCTTCCTTA
CGTCATATAGGGCATTCGACCAGCTCCCGGATACCCAACACAACCTGATC
ACTTAGAGAAACAAACAATGTGGAAAATAATGGAAGCGGAAAAAAACATT
TCCGTAGAATTGACCGAATCCTTGGCCATGTTTCCGGCGGCTTCTGTATC
TGGTCTGTATTTTGCACATCCCAAATCACATTATTTCGCAACTGGGAAAA
TCTGCAAAGACCAGGTAAAAAATCGACGACAGTATAATATCATAAACTGA
ATCAACTTTTTTATTCAAGTTATTTGTTATAATGCTCCTTCTGGTAGAGC
ATTTTGTTGTTGTTGTTGACAATCATTTTTCAACTTATTTGATATTCAAG
TTATGAAAGGGCCCAGTGGATTATTATCTACAAACCGATAGTGATTTTCT
GATCCTGATTCTCTATTGAGGTGTCTCAAGTCCTTTTGTACTAAAATGAG
GTCAAAAGGATTAAATCAAATTATCATTCCTGAAGGTGACTTTTAGATAC
AAGACTGAAGAAACTTAGATCTTGACACATTGTAATAATGGGTCGTATTC
AAATACTTTATACTTATGCAACCGATATATCTGGCGATTTCATTGAAAAA
TTGTTTACCTCTTTTCTCTTCATCCAGGTTGAAGATTATGCTAATCGCAA
GAAGAAACCAATCAAAGAAATCGAAACCTGGTTGTCACCTGTTCTGGCAT
ACGAACCTGACTGCTGACATCAGCATTTATTTTAGAGTGGGGCTATTTCA
TTATTTAATTCGTGCTGAAGGAGTTATTTTGGAATCTCCCGTTATCAAAA
CGGGGGTGTAACTTGTTTGCAAGTTATTGAAGATTGAAAGTAATGGGATA
GAATTCTTGCCGGGATAGACATTTTCATAAATTACGTCACGAACATCACT
TGCCTCGTTTTGAAATTATTGCCATGGTGATTAGCTCCCAGCGGGTTTTA
TTAAACTACTTTCTATTTATAAAAAAAATCATTTAATGTCTCAAGGGACA
TAATCACTACTGATCACCATGGTAATTGTTTGAATACGAGGCAAGCGATG
TTCGTGACGTAATTTATGAAAAGGTCTATTCTCATTTTATAAAACATGAT
TTCACTTTTGGCTTTAATTTTTTTGCACTTTTTAGTTTGTTTAGAAGATT
TTTTTTTATAACAATTTTTAAATCATATTATGAAATAATATAACTTAGAA
CATGCTATTTGTTAAAAATCTTTATTTATCGTTTTTTCGTGTTTACGTTT
TGTTACCAGTTTACTACTTAGGCTATTCTGAATTTAGTTTTTCCTAATTT
TTGAAAAAAATTATAGTATTTATCTAACCTGAAATCAAATCACAATTGTT
TTTTCTCGTTAAGTATTACACTCTGGTGAATTTGATGAAGACCCGCTTTG
CTTAGGATGACCTCGTGACGGATAAAATAGAAGTTTTCTCTGTGGTGTTG
CAATGGAATATTTTATTTTTTTTAGACTTGTAACAAGATACTAACTTGTA
TGGAATTTCCTTGAGAGGGCTTTTTACCTCAAGGGCTTTAGTAGTTCATT
TTAGAGGCGTTTAGAGCTTTACTCTGTCTATTACACAACCTGTCATCTGA
TTTTCTGGGGTTTCGAATAATTTTTATTGAAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_008233	XLOC_008233	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000197	supercontig	sc0000197:12978..17459 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.88141	1.57719	1.68432	2.00806	0.76972	1.14215	0.460637	0.501682	0.665363	0.764898	0	0	0	0	0	0.0993824	0	0	0	0	2.66457	2.52547	0	0	0	0

Blast

[Close]

BLAST of TCONS_00014707 vs. Swiss-Prot (Human)
Match: METH (Methionine synthase OS=Homo sapiens GN=MTR PE=1 SV=2)

HSP 1 Score: 389.037 bits (998), Expect = 3.946e-120
Identity = 183/310 (59.03%), Postives = 236/310 (76.13%), Query Frame = 3

Query:    3 VGNKIYKDLPIQQLVSYIDWKPFFDIWQLRGRYPNRGFPKIFKDKTVGEEAQRVYNDAQSMLNKIISNKSMKAVGQVTFVEANSVEDDIHLYQRNENGERIH-FQTFYGIRQQAEKETKE-KSYMCISDFVAPLCANKTDYVGMFVVSCLGAEELAKQYEDLFDDYSSIMVKAIADRLAEAFAEKLHEMVRRDLWGYSNXXXXXXXXXXKVKYQGIRPAPGYPTQPDHLEKQTMWKIMEAEKNISVELTESLAMFPAASVSGLYFAHPKSHYFATGKICKDQVEDYANRKKKPIKEIETWLSPVLAYEPD 926
            +G ++++D  +Q+LV YIDWKPFFD+WQLRG+YPNRGFPKIF DKTVG EA++VY+DA +MLN +IS K ++A G V F  A S++DDIHLY      +      TFYG+RQQAEK++   + Y C+SDF+APL +   DY+G+F V+C G EEL+K YED  DDYSSIMVKA+ DRLAEAFAE+LHE VRR+LW Y   E L  +DL +++Y+GIRPAPGYP+QPDH EK TMW++ + E++  + LTESLAM PA++VSGLYF++ KS YFA GKI KDQVEDYA RK   + E+E WL P+L Y+ D
Sbjct:  956 IGTQVFEDYDLQKLVDYIDWKPFFDVWQLRGKYPNRGFPKIFNDKTVGGEARKVYDDAHNMLNTLISQKKLRARGVVGFWPAQSIQDDIHLYAEAAVPQAAEPIATFYGLRQQAEKDSASTEPYYCLSDFIAPLHSGIRDYLGLFAVACFGVEELSKAYEDDGDDYSSIMVKALGDRLAEAFAEELHERVRRELWAYCGSEQLDVADLRRLRYKGIRPAPGYPSQPDHTEKLTMWRLADIEQSTGIRLTESLAMAPASAVSGLYFSNLKSKYFAVGKISKDQVEDYALRKNISVAEVEKWLGPILGYDTD 1265

The following BLAST results are available for this feature:

BLAST of TCONS_00014707 vs. Swiss-Prot (Human)

BLAST of TCONS_00014707 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
METH	3.946e-120	59.03	Methionine synthase OS=Homo sapiens GN=MTR PE=1 SV...	[more]

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TCONS_00014707 (transcript) - C. hemisphaerica