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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014792 ID=TCONS_00014792|Name=TCONS_00014792|organism=Clytia hemisphaerica|type=transcript|length=2902bp
ATTAAAGTTAATTTTATTTACTCTTATTTTTCAGTGACAAATTTAAAATg
attaaaagtaaaaatgaGATCCGAGAATAAGATAACATTGATCTCAACAT
GATTTGAAGATCAACAATGGGAAATCTATCTGAGGAGAACGGAGGCATGG
TCACTGTCTCCATATATAATTTGGTGCAAGCATTGGTTGAACCGAATTTC
ATTGAAGAGTACACTTTAAATCATTCTGACACCATATCTGTTTTGAAGAC
AAGGGTTTCTAAATCCCTTCATATCCCTGTAAATGCTTTGTTCTTCTTGA
AGGAGCAACCTGAGGATATAGGGATAGTTGTAGCACCAATCCTTGATAAA
ACGGAGCTATCTCACTTTTTAAGGGAGAACGAAGATTCAAGAGGTATTAG
ATTATTTCTTGGTGCGTTCGATTTGGAAGGAATAATTAATGAGGAAGTCA
AACTTCGTCATCAGGAGCTTTACGATATTCCATTTTTATGTGGTTATGTA
CTCAGGAGTTTTGGGTCAGGAAATGTTATAGGTTTTATTAAAGAGAAAGA
TATAACTGTCGCtgaaattaaaagttttgttgAAGAAGTGACACAGCTAC
CGATCAACTGTCAAAAATTGTTGNAAGTTTTGTTGAAGAAGTGACACAGC
TACCGATCAGTTgtcaaaaattgttgaaaagtgATTCTAAAGAGGTTTCT
GATTGGGCACTGGCTCTTTCTATGGAGGATGAATGGGCGCGATCTATTTA
TGTTGTTTGTACAAATAATGAGCATGAGGAAATTTGCTTGGGGTACGGCA
TCAAATTATTCAAGAAACTTCAACTCAAATTGTTGACCAAGGTTGAGGAT
TTGAACCCAAGTCAATTTGAACGAGTAGATGACGTCAAGAGATTTATCGC
AGAGAATCATGGGATACGAGAATACAATCAGCAACTTTTACATAAAGGGG
TTGTATTGGAGACGAACGATTTTATTTATGATCTATTTTTGAAGGACAAT
TCGATGGATGTTATGAGTTTAAGTTTGGTGGTTATAGAAGGAACTTTTGA
AATCATTATATCACCAGGCCAAAGTTACGGTGAAGAATATATGGATTTTC
CGCTTACGATAACAGATTCCACAACGATTTCTAAAGTTAAAGATAACATT
AAAGAGACTATCAATATCTCGCCGAAATCTTTCACATTGAAGAAAGATGG
AGTCGAAAGTATAGACGAGGATGGTGAGAAGTCAGTCGTTGATTTTGTTG
ACAGTATGTATTcgttattcttttattttgctttgattCATGTGCGAATT
CGTTTCACTAAATGTACTGATAAGATTGAGGAGTTTACCGAAACTTTGAG
CCATGGAAATCCATTTAAAACACTGAAGGTTTTCACAAAAGAAATTCGta
aaaaatatcatttgaaGAAAAGCGAATTGAAATACATCCCTTCGGATTGT
GATGTGCATTTAACGGATAGAGAGGTTTTGGATAGCAGGATGTTGattga
tttttggaaaagtaAGATTTGTTTACTGGAATTTGAAAGCAATAAAAATA
TCGATGGAAAATGTTCTTTGATGTGATTATGATATCTTATACAGAAAAAT
AATCAAGTTGCGAACAAAATTCTGTCCTCGGGTGTTCGTTACcattaacc
ctttcagtcccaagGCTTttgcactttaaaaaaaaaaatcaaaaaattcg
cGCTCAGCAAGACATCGGTTGAGAGGTAAGGGCGCTCCGAAATCAaccta
ttttctttaaaatttgatgctctTGCTAATGGTAGCTACGAGAGCACCAG
AAATTACTTAGTTCTGGAGATTACTTAGTTCCGGAGATATAGTCCGGTGA
AGTTTGTTAACGCTGGTCTCTGGGGCTGAAATGGttaaaaagattacatc
atttaGACATATATATTATTTATTGTGTTCCGTATTATTTGCACATACAA
TCACTTctataatatattttgaatcagtatttttgtaattttaatatTGT
TATGTTTATTGTATTAAAAATTTCTCTACTAAACTTTTGCACCTCTACCA
AGCCAAGAGACTGGGTTAGAGTTTATTGTCTCACTTTGTGATATATTTTG
AAtcagtatttttgtaattttgatattattgtttttattatattaaaaat
ttcgtcactccGCTGTTGCACCTCTACCAAGCCAATAGACTGGGTTAGAG
TTTATTGTATCActtttataatatattattatccatatagcggtcattaa
gtaagctaTTAAAGGTTCAATCGGCGGGCGGTATTTAAAGAGTTTGTGAC
TCAAATTCTCATACCTGTGCTGAGGAAACTAAAGCGCCAGGcctcagagg
gctgaaatatcattaaccgcccgggtatagggcaataacgtcatttgcgg
cccgctcggaattggattaaagtcgttgcattgaagcgaagagactaaaa
taacgtcagaaaaaaaacatattttggtcatttgcggcccgctcgcaagg
tgctaaaaatttgttgaagagattgcattgaagcgaaaagacttggttga
cattagaaaaaaaacgttgtttgaatgtccgctatgaataataatagtaa
tagcgttaagttttcgttcgttgttgcattaattctgcccttgcagtttg
attattagccctctagtgccatttgcgccctccgcttcgcgtcgggctca
aatgacactatcgggcgaaaaatcaaactacgcgggcagaaaataaaaac
aacgacctcaaactgaacgctattgttatattttgaatcagcatttttgt
aattttaatatTGTCATGtttattattttaaaagtttctctaCTCCACTT
TTGCACCTCTACCAAGCCAAGAGACTGGGTTAGAGTTTATTGTATCACTT
TT Run BLAST on NCBI transcript from alignment at sc0000198:383110..390304+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014792 ID=TCONS_00014792|Name=TCONS_00014792|organism=Clytia hemisphaerica|type=transcript|length=7195bp|location=Sequence derived from alignment at sc0000198:383110..390304+ (Clytia hemisphaerica)
ATTAAAGTTAATTTTATTTACTCTTATTTTTCAGTGACAAATTTAAAATg
attaaaagtaaaaatgaGATCCGAGAATAAGATAACATTGATCTCAACAT
GATTTGAAGATCAACAATGGGAAATCTATCTGAGGAGAACGGAGGCATGG
TCACTGTCTCCATATATAATTTGGTGCAAGCATTGGTTGAACCGAATTTC
ATTGAAGAGTACACTTTAAATCATTCTGACACCATATCTGTTTTGAAGAC
AAGGGTTTCTAAATCCCTTCATATCCCTGTAAATGCTTTGTTCTTCTTGA
AGGAGCAACCTGAGGATATAGGGATAGTTGTAGCACCAATCCTTGATAAA
ACGGAGCTATCTCACTTTTTAAGGGAGAACGAAGATTCAAGAGGTATTAG
ATTATTTCTTGGTGCGTTCGATTTGGAAGGAATAATTAATGAGGAAGTCA
AACTTCGTCATCAGGAGCTTTACGATATTCCATTTTTATGTGGTTATGTA
CTCAGGAGTTTTGGGTCAGGAAATGTTATAGGTTTTATTAAAGAGAAAGA
TATAACTGTCGCtgaaattaaaagttttgttgAAGAAGTGACACAGCTAC
CGATCAACTGTCAAAAATTGTTGNAAGTTTTGTTGAAGAAGTGACACAGC
TACCGATCAGTTgtcaaaaattgttgaaaagtgATTCTAAAGAGGTTTCT
GATTGGGCACTGGCTCTTTCTATGGAGGATGAATGGGCGCGATCTATTTA
TGTTGTTTGTACAAATAATGAGCATGAGGAAATTTGCTTGGGGTACGGCA
TCAAATTATTCAAGAAACTTCAACTCAAATTGTTGACCAAGGTTGAGGAT
TTGAACCCAAGTCAATTTGAACGAGTAGATGACGTCAAGAGATTTATCGC
AGAGAATCATGGGATACGAGAATACAATCAGCAACTTTTACATAAAGGGG
TTGTATTGGAGACGAACGATTTTATTTATGATCTATTTTTGAAGGACAAT
TCGATGGATGTTATGAGTTTAAGTTTGGTGGTTATAGAAGGAACTTTTGA
AATCATTATATCACCAGGTATGTGATCCTTCACTTCAGTCGAGATGAGTA
TAACAGATTagacaatattttataaatctaaaattatttcgtagaggtcg
attgATCTGTGAAATCAAATTCTATGAATAATAAAGAATAAgagtatttg
gtactttgcagACTGGTCTGTACCTGCCGGAACTCAAAAACTAATGGAAC
TcttcatttgaaattttcaccagtggTAGATATTAACAATCTAGGGTAGT
GTGCAAAATCTTATTTTGGTCACTTGAGTGGTTGGCATTTGAATTGCCTC
ACAAAATTAGAGCAATAATTATAACGTCATCAGATggctatgacgtcatc
aacgatgccaaaaattcatatttcaAGTCAGTTagataaatatttaaaaa
tgttgtaaaaaatgtttttttttggacctacctccgggtgccccggtgga
ggtcctataaattaacccatgtccgttcgttcgttcgttcgtctgtccgt
CTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtatagctt
ttaacaatgttgactcattatttttttctgattttttgcacaatgatgca
aaatggcaatgcctaaaatgtgacggagccagactttcgaaaaaaaatat
atttgggcaaatttgggccaaaaactgcctaaaatagggttatttggact
ttgtgcaaaatcctgttattacttttttctgattttttgtacaaagatgg
agggcaagattctctaaagaatgactgaagtggtttttcccgNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaattcttattcgccttaaaa
gacggattttcgtattttggggaaattccctttaaccaaataagaaaata
tagcttttctcaatgttgactcataattctttctgattttttgcacaatg
atgcaaaatggcaatgcccaaaatgtgacgaagccagatttttaaggaaa
ataattttgggCAAAGTTGGGctaaaaacagcttaaaaggttttttgggc
ctgaatggttcaagtgattttcgtatttggggaaattcctttttaccatt
ttacattattcaacacacaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcccccccccccctca
agaTGCTCTAACTGTTAATAAGACAGATCCtgaattttcttccattttag
GCCAAAGTTACGGTGAAGAATATATGGATTTTCCGCTTACGATAACAGAT
TCCACAACGATTTCTAAAGTTAAAGATAACATTAAAGAGACTATCAATAT
CTCGCCGAAATCTTTCACATTGAAGAAAGATGGAGTCGAAAGTATAGACG
AGGATGGTGAGAAGTCAGTCGTTGATTTTGTTGACAGTATGTATTcgtta
ttcttttattttgctttgattCATGTGCGAATTCGTTTCACTAAATGTAC
TGATAAGATTGAGGAGTTTACCGAAACTTTGAGCCATGGAAATCCATTTA
AAACACTGAAGGTTTTCACAAAAGAAATTCGtaaaaaatatcatttgaaG
AAAAGCGAATTGAAATACATCCCTTCGGATTGTGATGTGCATTTAACGGA
TAGAGAGGTTTTGGATAGCAGGATGTTGattgatttttggaaaagtaAGA
TTTGTTTACTGGAATTTGAAAGCAATAAAAATATCGATGGAAAATGTTCT
TTGATGTGATTATGATATCTTATACAGAAAAATAATCAAGTTGCGAACAA
AATTCTGTCCTCGGGTGTTCGTTACcattaaccctttcagtcccaagGCT
TttgcactttaaaaaaaaaaatcaaaaaattcgcGCTCAGCAAGACATCG
GTTGAGAGGTAAGGGCGCTCCGAAATCAacctattttctttaaaatttga
tgctctTGCTAATGGTAGCTACGAGAGCACCAGAAATTACTTAGTTCTGG
AGATTACTTAGTTCCGGAGATATAGTCCGGTGAAGTTTGTTAACGCTGGT
CTCTGGGGCTGAAATGGttaaaaagattacatcatttaGACATATATATT
ATTTATTGTGTTCCGTATTATTTGCACATACAATCACTTctataatatat
tttgaatcagtatttttgtaattttaatatTGTTATGTTTATTGTATTAA
AAATTTCTCTACTAAACTTTTGCACCTCTACCAAGCCAAGAGACTGGGTT
AGAGTTTATTGTCTCACTTTGTGATATATTTTGAAtcagtatttttgtaa
ttttgatattattgtttttattatattaaaaatttcgtcactccGCTGTT
GCACCTCTACCAAGCCAATAGACTGGGTTAGAGTTTATTGTATCActttt
ataatatattattatccatatagcggtcattaagtaagctaTTAAAGGTT
CAATCGGCGGGCGGTATTTAAAGAGTTTGTGACTCAAATTCTCATACCTG
TGCTGAGGAAACTAAAGCGCCAGGcctcagagggctgaaatatcattaac
cgcccgggtatagggcaataacgtcatttgcggcccgctcggaattggat
taaagtcgttgcattgaagcgaagagactaaaataacgtcagaaaaaaaa
catattttggtcatttgcggcccgctcgcaaggtgctaaaaatttgttga
agagattgcattgaagcgaaaagacttggttgacattagaaaaaaaacgt
tgtttgaatgtccgctatgaataataatagtaatagcgttaagttttcgt
tcgttgttgcattaattctgcccttgcagtttgattattagccctctagt
gccatttgcgccctccgcttcgcgtcgggctcaaatgacactatcgggcg
aaaaatcaaactacgcgggcagaaaataaaaacaacgacctcaaactgaa
cgctattgttatattttgaatcagcatttttgtaattttaatatTGTCAT
GtttattattttaaaagtttctctaCTCCACATTTGCACCTCTACCAAGC
CAATAGACTGGGTTAGAGTTTATTGTATCacttttataatatattttgaa
tcagtatttttgtaattttgatattattgtttttattatattaaaaattt
cTCCACTCCACTGTTGCACCTCTACCAAGCCAAGACACTGGGTTAGAGTT
TATTGTATCacttttataatatattttgaatcagtatttttgtaattttg
atattGTTATGTTTATTATATTAAAATTTCTCCATTCCACTGTTGCACCT
CTACCAAGCCAAGACACTGGGTTAGAGTTTATTGTATCacttttataata
tattttgaatcagtatttttgtaattttgatattGTTATGTTTATTATAT
TAAAATTTCTCCATTCCACTGTTGCACCTCTACCAAGCCAAGACACTGGG
TTAGAGTTTATTGTATCACTTTGTGATGTATTTTGAAtcagtatttttgt
aattttattatTGTCATGtttattatattaaaaatttcTCCATTCCACTG
TTGCACCTCTACCAAGCCAATAGACTGGGTTAGAGTTTATTGTATCACTT
TGTGATGTATTTTGAAtcagtatttttgtaattttaatattattgttttt
attttttaaaaatttctccaCTCCACTGTTGCAACTCTACCAAGCCAAGA
GACTGGGTTAGAATTTATTGTATCacttttataatatattttgaatcagt
atttttgtaattttgatattgttatgtttattatattaaaaatttcTCCA
CTCCACTGTTCCACCTCTACCAAGCCAAGAGACTGGGTTAGAGTTTATTG
TATCACTTTGTGATATACTAgtatcagtatttttgttattctcaacttca
gttgagctataatctgagaatgtctgtatgtatgtctgtatgtatgtatg
tatgtccgtccgaaaactttagggcaggctggacacttcaaaaaagattt
ggatgaaatttggcacacttgttccttgggtgaatatctgggggtgtttt
ttttcatttttcaaaatttttgatttttggggcctggggacgagNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcgccaaaacgaggc
taagattttggggcagcctggagacttcaaaaattgttcgatctggctga
aattttgcacacttgttccttgggtgaaaatctgggggtttttttttcat
ttttcaaaaattttgatttttggggcctggggacgagtttttcgccaaaa
cgaggctaaaattttggggcagcctggagacttcaaaaattgttcgagcT
GGCTgcaattttgcacacttgctcCTTGGGTGAAAATCTGGggggttttt
tttcatttttcaaaaattttgatttttggggcctggggacgagtttttcg
ccaaaacgaggctaagcttttggggcagcctggagacttcaaaaattgtt
cgagcTGGCTgcaattttgcacacttgctcCTTGGGTGAAAATCTGGggg
gttttttttcatttttcaaaaattttgatttttggggcctggggacgagt
ttttcgccaaaacgaggctaagcttttggggcagcctggagacttcaaaa
attgttcgagcTGGCTgcaattttgcacacttgctcCTTGGGTGAAAATC
TGGggggttttttttcatttttcaaaaattttgatttttggggcctgggg
acgagtttttcgccaaaacgaggctaagcttttggggcagcctggagact
tcaaaaattgttcgagcTGGCTgcaattttgcacacttgctcCTTGGGTG
AAAATCTGGggggttttttttcatttttcaaaaattttgatttttggggc
ctggggacgagtttttcgccaaaacgaggctaagcttttggggcagcctg
gagacttcaaaaattgttcgagcTGGCTgcaattttgcacacttgctcCT
TGGGTGAAAATCTGGggggttttttttcatttttcaaaaattttgatttt
tggggcctggggacgagtttttcgccaaaacgaggctaagcttttggggc
agcctggagacttcaaaaattgttcgagcTGGCTgcaattttgcacactt
gctcCTTGGGTGAAAATCTGGggggttttttttcatttttcaaaaatttt
gatttttggggcctggggacgagtttttcgccaaaacgaggctaaaattt
cTCCATTCCACTGTTGCACCTCTACCAAGCCAAGAGACTGGGTTAGAGTT
TATTGTATCacttttataatatattttgaataagtatttttgtaatttta
atatTGTTATGtttattatattaaaaatttcGCCACTCCACTTTTGCACC
TCTACCAAGCCAAGAGACTGGGTTAGAGTTTATTGTATCACTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014792-exon-sc0000198-1491911889:383110..384176 | TCONS_00014792-exon-sc0000198-1491911889:383110..384176 | Clytia hemisphaerica | exon |
| TCONS_00014792-exon-sc0000198-1510915933:383110..384176 | TCONS_00014792-exon-sc0000198-1510915933:383110..384176 | Clytia hemisphaerica | exon |
| TCONS_00014792-exon-sc0000198-1575043694:383110..384176 | TCONS_00014792-exon-sc0000198-1575043694:383110..384176 | Clytia hemisphaerica | exon |
| TCONS_00014792-exon-sc0000198-1491911889:386010..387790 | TCONS_00014792-exon-sc0000198-1491911889:386010..387790 | Clytia hemisphaerica | exon |
| TCONS_00014792-exon-sc0000198-1510915933:386010..387790 | TCONS_00014792-exon-sc0000198-1510915933:386010..387790 | Clytia hemisphaerica | exon |
| TCONS_00014792-exon-sc0000198-1575043694:386010..387790 | TCONS_00014792-exon-sc0000198-1575043694:386010..387790 | Clytia hemisphaerica | exon |
| TCONS_00014792-exon-sc0000198-1491911889:390251..390304 | TCONS_00014792-exon-sc0000198-1491911889:390251..390304 | Clytia hemisphaerica | exon |
| TCONS_00014792-exon-sc0000198-1510915933:390251..390304 | TCONS_00014792-exon-sc0000198-1510915933:390251..390304 | Clytia hemisphaerica | exon |
| TCONS_00014792-exon-sc0000198-1575043694:390251..390304 | TCONS_00014792-exon-sc0000198-1575043694:390251..390304 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000198 | supercontig | sc0000198:383110..390304 + |
Blast
The following BLAST results are available for this feature:
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