XLOC_008275 (gene) - C. hemisphaerica

Overview
NameXLOC_008275
Unique NameXLOC_008275
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000198:383110..390897+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_008275 ID=XLOC_008275|Name=XLOC_008275|organism=Clytia hemisphaerica|type=gene|length=7788bp|location=Sequence derived from alignment at sc0000198:383110..390897+ (Clytia hemisphaerica)
ATTAAAGTTAATTTTATTTACTCTTATTTTTCAGTGACAAATTTAAAATg
attaaaagtaaaaatgaGATCCGAGAATAAGATAACATTGATCTCAACAT
GATTTGAAGATCAACAATGGGAAATCTATCTGAGGAGAACGGAGGCATGG
TCACTGTCTCCATATATAATTTGGTGCAAGCATTGGTTGAACCGAATTTC
ATTGAAGAGTACACTTTAAATCATTCTGACACCATATCTGTTTTGAAGAC
AAGGGTTTCTAAATCCCTTCATATCCCTGTAAATGCTTTGTTCTTCTTGA
AGGAGCAACCTGAGGATATAGGGATAGTTGTAGCACCAATCCTTGATAAA
ACGGAGCTATCTCACTTTTTAAGGGAGAACGAAGATTCAAGAGGTATTAG
ATTATTTCTTGGTGCGTTCGATTTGGAAGGAATAATTAATGAGGAAGTCA
AACTTCGTCATCAGGAGCTTTACGATATTCCATTTTTATGTGGTTATGTA
CTCAGGAGTTTTGGGTCAGGAAATGTTATAGGTTTTATTAAAGAGAAAGA
TATAACTGTCGCtgaaattaaaagttttgttgAAGAAGTGACACAGCTAC
CGATCAACTGTCAAAAATTGTTGNAAGTTTTGTTGAAGAAGTGACACAGC
TACCGATCAGTTgtcaaaaattgttgaaaagtgATTCTAAAGAGGTTTCT
GATTGGGCACTGGCTCTTTCTATGGAGGATGAATGGGCGCGATCTATTTA
TGTTGTTTGTACAAATAATGAGCATGAGGAAATTTGCTTGGGGTACGGCA
TCAAATTATTCAAGAAACTTCAACTCAAATTGTTGACCAAGGTTGAGGAT
TTGAACCCAAGTCAATTTGAACGAGTAGATGACGTCAAGAGATTTATCGC
AGAGAATCATGGGATACGAGAATACAATCAGCAACTTTTACATAAAGGGG
TTGTATTGGAGACGAACGATTTTATTTATGATCTATTTTTGAAGGACAAT
TCGATGGATGTTATGAGTTTAAGTTTGGTGGTTATAGAAGGAACTTTTGA
AATCATTATATCACCAGGTATGTGATCCTTCACTTCAGTCGAGATGAGTA
TAACAGATTagacaatattttataaatctaaaattatttcgtagaggtcg
attgATCTGTGAAATCAAATTCTATGAATAATAAAGAATAAgagtatttg
gtactttgcagACTGGTCTGTACCTGCCGGAACTCAAAAACTAATGGAAC
TcttcatttgaaattttcaccagtggTAGATATTAACAATCTAGGGTAGT
GTGCAAAATCTTATTTTGGTCACTTGAGTGGTTGGCATTTGAATTGCCTC
ACAAAATTAGAGCAATAATTATAACGTCATCAGATggctatgacgtcatc
aacgatgccaaaaattcatatttcaAGTCAGTTagataaatatttaaaaa
tgttgtaaaaaatgtttttttttggacctacctccgggtgccccggtgga
ggtcctataaattaacccatgtccgttcgttcgttcgttcgtctgtccgt
CTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtatagctt
ttaacaatgttgactcattatttttttctgattttttgcacaatgatgca
aaatggcaatgcctaaaatgtgacggagccagactttcgaaaaaaaatat
atttgggcaaatttgggccaaaaactgcctaaaatagggttatttggact
ttgtgcaaaatcctgttattacttttttctgattttttgtacaaagatgg
agggcaagattctctaaagaatgactgaagtggtttttcccgNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaattcttattcgccttaaaa
gacggattttcgtattttggggaaattccctttaaccaaataagaaaata
tagcttttctcaatgttgactcataattctttctgattttttgcacaatg
atgcaaaatggcaatgcccaaaatgtgacgaagccagatttttaaggaaa
ataattttgggCAAAGTTGGGctaaaaacagcttaaaaggttttttgggc
ctgaatggttcaagtgattttcgtatttggggaaattcctttttaccatt
ttacattattcaacacacaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcccccccccccctca
agaTGCTCTAACTGTTAATAAGACAGATCCtgaattttcttccattttag
GCCAAAGTTACGGTGAAGAATATATGGATTTTCCGCTTACGATAACAGAT
TCCACAACGATTTCTAAAGTTAAAGATAACATTAAAGAGACTATCAATAT
CTCGCCGAAATCTTTCACATTGAAGAAAGATGGAGTCGAAAGTATAGACG
AGGATGGTGAGAAGTCAGTCGTTGATTTTGTTGACAGTATGTATTcgtta
ttcttttattttgctttgattCATGTGCGAATTCGTTTCACTAAATGTAC
TGATAAGATTGAGGAGTTTACCGAAACTTTGAGCCATGGAAATCCATTTA
AAACACTGAAGGTTTTCACAAAAGAAATTCGtaaaaaatatcatttgaaG
AAAAGCGAATTGAAATACATCCCTTCGGATTGTGATGTGCATTTAACGGA
TAGAGAGGTTTTGGATAGCAGGATGTTGattgatttttggaaaagtaAGA
TTTGTTTACTGGAATTTGAAAGCAATAAAAATATCGATGGAAAATGTTCT
TTGATGTGATTATGATATCTTATACAGAAAAATAATCAAGTTGCGAACAA
AATTCTGTCCTCGGGTGTTCGTTACcattaaccctttcagtcccaagGCT
TttgcactttaaaaaaaaaaatcaaaaaattcgcGCTCAGCAAGACATCG
GTTGAGAGGTAAGGGCGCTCCGAAATCAacctattttctttaaaatttga
tgctctTGCTAATGGTAGCTACGAGAGCACCAGAAATTACTTAGTTCTGG
AGATTACTTAGTTCCGGAGATATAGTCCGGTGAAGTTTGTTAACGCTGGT
CTCTGGGGCTGAAATGGttaaaaagattacatcatttaGACATATATATT
ATTTATTGTGTTCCGTATTATTTGCACATACAATCACTTctataatatat
tttgaatcagtatttttgtaattttaatatTGTTATGTTTATTGTATTAA
AAATTTCTCTACTAAACTTTTGCACCTCTACCAAGCCAAGAGACTGGGTT
AGAGTTTATTGTCTCACTTTGTGATATATTTTGAAtcagtatttttgtaa
ttttgatattattgtttttattatattaaaaatttcgtcactccGCTGTT
GCACCTCTACCAAGCCAATAGACTGGGTTAGAGTTTATTGTATCActttt
ataatatattattatccatatagcggtcattaagtaagctaTTAAAGGTT
CAATCGGCGGGCGGTATTTAAAGAGTTTGTGACTCAAATTCTCATACCTG
TGCTGAGGAAACTAAAGCGCCAGGcctcagagggctgaaatatcattaac
cgcccgggtatagggcaataacgtcatttgcggcccgctcggaattggat
taaagtcgttgcattgaagcgaagagactaaaataacgtcagaaaaaaaa
catattttggtcatttgcggcccgctcgcaaggtgctaaaaatttgttga
agagattgcattgaagcgaaaagacttggttgacattagaaaaaaaacgt
tgtttgaatgtccgctatgaataataatagtaatagcgttaagttttcgt
tcgttgttgcattaattctgcccttgcagtttgattattagccctctagt
gccatttgcgccctccgcttcgcgtcgggctcaaatgacactatcgggcg
aaaaatcaaactacgcgggcagaaaataaaaacaacgacctcaaactgaa
cgctattgttatattttgaatcagcatttttgtaattttaatatTGTCAT
GtttattattttaaaagtttctctaCTCCACATTTGCACCTCTACCAAGC
CAATAGACTGGGTTAGAGTTTATTGTATCacttttataatatattttgaa
tcagtatttttgtaattttgatattattgtttttattatattaaaaattt
cTCCACTCCACTGTTGCACCTCTACCAAGCCAAGACACTGGGTTAGAGTT
TATTGTATCacttttataatatattttgaatcagtatttttgtaattttg
atattGTTATGTTTATTATATTAAAATTTCTCCATTCCACTGTTGCACCT
CTACCAAGCCAAGACACTGGGTTAGAGTTTATTGTATCacttttataata
tattttgaatcagtatttttgtaattttgatattGTTATGTTTATTATAT
TAAAATTTCTCCATTCCACTGTTGCACCTCTACCAAGCCAAGACACTGGG
TTAGAGTTTATTGTATCACTTTGTGATGTATTTTGAAtcagtatttttgt
aattttattatTGTCATGtttattatattaaaaatttcTCCATTCCACTG
TTGCACCTCTACCAAGCCAATAGACTGGGTTAGAGTTTATTGTATCACTT
TGTGATGTATTTTGAAtcagtatttttgtaattttaatattattgttttt
attttttaaaaatttctccaCTCCACTGTTGCAACTCTACCAAGCCAAGA
GACTGGGTTAGAATTTATTGTATCacttttataatatattttgaatcagt
atttttgtaattttgatattgttatgtttattatattaaaaatttcTCCA
CTCCACTGTTCCACCTCTACCAAGCCAAGAGACTGGGTTAGAGTTTATTG
TATCACTTTGTGATATACTAgtatcagtatttttgttattctcaacttca
gttgagctataatctgagaatgtctgtatgtatgtctgtatgtatgtatg
tatgtccgtccgaaaactttagggcaggctggacacttcaaaaaagattt
ggatgaaatttggcacacttgttccttgggtgaatatctgggggtgtttt
ttttcatttttcaaaatttttgatttttggggcctggggacgagNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcgccaaaacgaggc
taagattttggggcagcctggagacttcaaaaattgttcgatctggctga
aattttgcacacttgttccttgggtgaaaatctgggggtttttttttcat
ttttcaaaaattttgatttttggggcctggggacgagtttttcgccaaaa
cgaggctaaaattttggggcagcctggagacttcaaaaattgttcgagcT
GGCTgcaattttgcacacttgctcCTTGGGTGAAAATCTGGggggttttt
tttcatttttcaaaaattttgatttttggggcctggggacgagtttttcg
ccaaaacgaggctaagcttttggggcagcctggagacttcaaaaattgtt
cgagcTGGCTgcaattttgcacacttgctcCTTGGGTGAAAATCTGGggg
gttttttttcatttttcaaaaattttgatttttggggcctggggacgagt
ttttcgccaaaacgaggctaagcttttggggcagcctggagacttcaaaa
attgttcgagcTGGCTgcaattttgcacacttgctcCTTGGGTGAAAATC
TGGggggttttttttcatttttcaaaaattttgatttttggggcctgggg
acgagtttttcgccaaaacgaggctaagcttttggggcagcctggagact
tcaaaaattgttcgagcTGGCTgcaattttgcacacttgctcCTTGGGTG
AAAATCTGGggggttttttttcatttttcaaaaattttgatttttggggc
ctggggacgagtttttcgccaaaacgaggctaagcttttggggcagcctg
gagacttcaaaaattgttcgagcTGGCTgcaattttgcacacttgctcCT
TGGGTGAAAATCTGGggggttttttttcatttttcaaaaattttgatttt
tggggcctggggacgagtttttcgccaaaacgaggctaagcttttggggc
agcctggagacttcaaaaattgttcgagcTGGCTgcaattttgcacactt
gctcCTTGGGTGAAAATCTGGggggttttttttcatttttcaaaaatttt
gatttttggggcctggggacgagtttttcgccaaaacgaggctaaaattt
cTCCATTCCACTGTTGCACCTCTACCAAGCCAAGAGACTGGGTTAGAGTT
TATTGTATCacttttataatatattttgaataagtatttttgtaatttta
atatTGTTATGtttattatattaaaaatttcGCCACTCCACTTTTGCACC
TCTACCAAGCCAAGAGACTGGGTTAGAGTTTATTGTATCACTTTTATAAT
AAATTCNAAtcagtatttttgtaattttgatattGTTATGTTTATTATAT
TAAAATTTCTCCATTCCACTGTTGCACCTCTACCAAGCCAAGACACTGGG
TTAGAGTTTATTGTATCacttttataatatattttgaatcagtatttttg
taattttgatattGTTATGTTTATTATATTAAAATTTCTCCATTCCACTG
TTGCACCTCTACCAAGCCAAGACACTGGGTTAGAGTTTATTGTATCactt
ttataatatattttgaatcagtatttttgtaattttgatattgttatgtt
tattatattaaaaatttcTCCACTCCACTGTTCCACCTCTACCAAGCCAA
GAGACTGGGTTAGAGTTTATTGTATCacttttataatatattttgaataa
gtatttttgtaattttgatattattgtttttattatattaaaaatttcgt
cactccGCTGTTGCACCTCTACCAAGCCAAGAGACTGGGTTAGAGTTTAT
TGTATCacttttataatatattttgaataagtatttttgtaattttgata
ttATTGTATTTATTATATTAAATTTTCTACACTCCACT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00014791TCONS_00014791Clytia hemisphaericatranscript
TCONS_00014792TCONS_00014792Clytia hemisphaericatranscript
TCONS_00014793TCONS_00014793Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00014793-proteinTCONS_00014793-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000198supercontigsc0000198:383110..390897 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.93	3.83	5.38	6.99	7.38	4.93	7.53	7.91	4.53	5.46	4.63	4.51	6.76	7.42	4.57	5.19	8.44	10.76	7.77	8.52	10.84	10.63	5.7	7.72	10.06	11.82	6.84	6.7	5.52	4.37