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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014798 ID=TCONS_00014798|Name=TCONS_00014798|organism=Clytia hemisphaerica|type=transcript|length=2227bpRun BLAST on NCBI protein sequence of TCONS_00014798-protein >TCONS_00014798-protein ID=TCONS_00014798-protein|Name=TCONS_00014798-protein|organism=Clytia hemisphaerica|type=polypeptide|length=313bp MLIEYTGEGAQCQAAKLLEVIVLQYRGHLDSTIPAFISLCLERLSMDLKTRun BLAST on NCBI transcript from alignment at sc0000198:56431..66156- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014798 ID=TCONS_00014798|Name=TCONS_00014798|organism=Clytia hemisphaerica|type=transcript|length=9726bp|location=Sequence derived from alignment at sc0000198:56431..66156- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000198:56431..66156- >TCONS_00014798 ID=TCONS_00014798|Name=TCONS_00014798|organism=Clytia hemisphaerica|type=CDS|length=8478bp|location=Sequence derived from alignment at sc0000198:56431..66156- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00014798 vs. Swiss-Prot (Human)
Match: IPO7 (Importin-7 OS=Homo sapiens GN=IPO7 PE=1 SV=1) HSP 1 Score: 182.57 bits (462), Expect = 1.018e-47 Identity = 123/319 (38.56%), Postives = 179/319 (56.11%), Query Frame = 2
Query: 290 TGEGAQCQAAKLLEVIVLQYRGH-LDSTIPAFISLCLERLSMDLKTSELRVMLLQVIISCVISNPILTLSHLEKCVTERYPMGF---TNEFLQLWLNDTDCFLGMHDRKVYVFGICSLLTLPPENRPQAVELFAPQFVPALLVVFKGLITMYXXXX----XXXXXXXXXXXXXXXXLNDSDDEYDEEGTQYVEMLNQK---RDKGXXXXXXXXXANELEMFTTPLD--DNPYVDEFITFKNTFQGIQAGDGKLFTVMTQSLNEEQKNNVQFVINTGINKQNKLESMKLEEQGGFQFQVANGGGGGAAPEQNFNFGGSLP 1207
GE A+C AAKLLEVI+LQ +G +D IP F+ LERL+ ++KTSELR M LQV I+ + NP L L+ LE R+P TN F+ WLND DCFLG+HDRK+ V G+C+L+ + E PQ + + Q +PA +++F GL Y + +++ E E EEL +D+ DE+G +Y+E+L ++ D+ +DD LE ++T +D DNP VDE+ FK FQ IQ + + +T LNEEQ+ +Q + ++ ES +E+ GG++F P +FNFGG P
Sbjct: 730 AGEDAECHAAKLLEVIILQCKGRGIDQCIPLFVEAALERLTREVKTSELRTMCLQVAIAALYYNPHLLLNTLENL---RFPNNVEPVTNHFITQWLNDVDCFLGLHDRKMCVLGLCALIDM--EQIPQVLNQVSGQILPAFILLFNGLKRAYACHAEHENDSDDDDEAEDDDETEELGSDEDDIDEDGQEYLEILAKQAGEDGDDEDWEEDDAEETALEGYSTIIDDEDNP-VDEYQIFKAIFQTIQNRNPVWYQALTHGLNEEQRKQLQDIATLADQRRAAHESKMIEKHGGYKF------SAPVVPS-SFNFGGPAP 1035 The following BLAST results are available for this feature:
BLAST of TCONS_00014798 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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