TCONS_00014800 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014800
Unique NameTCONS_00014800
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length542

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014800 ID=TCONS_00014800|Name=TCONS_00014800|organism=Clytia hemisphaerica|type=transcript|length=542bp
TTTTTAGATGTTGATCGAGTACACAGGGGAAGGAGCGCAGTGTCAAGCGG
CTAAGTTGTTAGAAGTCATTGTTTTGCAATACCGTGGTCATTTGGATAGC
ACGATACCAGCTTTCATCTCGTTGTGTTTGGAACGTTTATCTATGGATTT
GAAGACCAGTGAATTGAGAGTCATGCTTCTTCAAGTTaTCATTTCTTGCG
TGATCAGCAATCCCATCCTTACGCTATCTCACTTGGAGAAGTGTGTTACT
GAACGTTATCCAATGGGTTTCACAAACGAATTCCTTCAGCTCTGGCTCAA
CGATACTGACTGTTTCTTAGGAATGCACGATCGCAAAGTCTATGTCTTCG
GTATCTGTTCTCTGTTAACGTTACCACCAGAAAACCGCCCTCAAGCTGTT
GAATTATTCGCCCCTCAATTCGTTCCCGCCCTTCTAGTTGTATTCAAGGG
GCTCATCACCATGTATGAAAaatacgAGAAAGATATCGAAGAAGAAACGG
AAGAAAAACCAGCTGAAGAAGAAGAATTGAACGATTCGGACN
Run BLAST on NCBI

transcript from alignment at sc0000198:59154..65889-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014800 ID=TCONS_00014800|Name=TCONS_00014800|organism=Clytia hemisphaerica|type=transcript|length=6736bp|location=Sequence derived from alignment at sc0000198:59154..65889- (Clytia hemisphaerica)
TTTTTAGATGTTGATCGAGTACACAGGGGAAGGAGCGCAGTGTCAAGCGG
CTAAGTTGTTAGAAGTCATTGTTTTGCAATACCGTGGTCATTTGGATAGC
GTAAGTATCTCGTATTGTATATTGTTGATTTTTCATAACTTAGTGTCAAG
CCTGTGGCACCGTTAAACGGAGTCTTTAATGGGTTTTTCTTAGTTTAAAC
TTACGATTGTCAACTGAAACTCACTGTAATCCTTAAATGAAGCTTACATA
AAGCTTTCCGAATGTTAAAAATAAAGTATACGTCATACCACCTGATATCC
AGCCAATCCCTCTCAACCATTACACGTCATAACTTACGTGCGTAACAAAA
CACATCTCAACTCAAGAAAGAATTGGTACCCTCGACTTTAGGCTCTCCTA
GTCCCAGATTTATCGGTACTACAATACATGAAAATCGGGCGATCTCATAT
CATATGATACCACTGGTATATATGATAGTTTAACGTGCNTTACCACTTAT
TGTAAGCGAGTTTATGTATTTTTGAGGACGGCGGAGGAGTGACTGAATTG
ACTGACCAACAGTTCTGACCCGCAAAATTGAGGACGGTAAAAGTGTTTTA
CCGTCGTCCTCAGTCAGTCAGTATGTAGACGTAGATGTAGATGTAGAGGG
TCTCTTTTTTTCGCATGGTATTTATCGCTTGATTACTCCACAACGTGAAT
CAAATAGGCTGGAAGTTGATTTGAATTTTTTTCGAAATCCCTCAAAGAGG
GGGCTGAAAGCCTTGCGACGTCATAAAGTCAAAACACTGTATAGATTGCC
CACTCTTTTTTGTTCACGTGGTCAAAAAAATAGAAATTATTTCAAATTCC
ACGTTCTCGTTTCCAGACCTATTCTTTATTGATATTTCCAGATGAAAACC
ATTTCATAAATGTGTTGGATTTTTTAGATGTTGATCGAGTACACAGGGGA
AGGAGCGCAGTGTCAAGCGGCTAAGTTGTTAGAAGTCATTGTTTTGCAAT
ACCGTGGTCATTTGGATAGCGTAAGTATCTCGTATTGTATATTGTTGATT
TTTCATAACTTAGTGTCAAGCCTGTGGCACCGTTAAACGGAGTCTTTAAT
GGGTTTTTCTTAGTTTAAACTTACGATTGTCAACTGAAACTCACTGTAAT
CCTTAAATGAAGCTTACATAAAGCTTTCCGAATGTTAAAAATAAAGTATA
CGTCATACCACCTGATATCCAACCAATCCCTCTCAACCATTACACGTCAT
AACTTACGTGCGTAACAAAACACATCTCAACTCAAGAAAGAATTGGTACC
CTCGACTTTAGGCTCTCCTAGTCCCAGATTTATCGGTACTACAATACATG
AAAATCGGGCGATCTCATATCATATGATACCACTGGTATGTATGATAGTT
TAACGTGTATTTCATTTTCTTTAAATTTCAGACGATACCAGCTTTCATCT
CGTTGTGTTTGGAACGTTTATCTATGGATTTGAAGACCAGTGAATTGAGA
GTCATGCTTCTTCAAGTTGTAAGTTTCATTCTTCCGCCAGAGAAAACTAT
TGAGTAAAAAATAGTCCAATATAGATTGATTCGAGCCCGAATCTTTTTGT
TTAAAGCCATGTTCGCACGTGATGGTTCCGTTTCGCTCCGAAACGGAATG
AAGTCATTCTATTGGTTACATTCAAGTGTTACGTCACTTCCAACCAATAG
AATGGCTTCATTCCGTTTCGGAGCGAAACGGAACCGTCGCGTGTGAGAAC
ATGGTCTAAGAAGAGTTCCCCTTCGAGTTTGAACTAGACATAACCAACTG
TATACAGCCAAACGTATAATGTAACAATAGCGTTCAGTTTGAGGTCATTG
TTGTTATTTTCTGCAAGGGCAGAATTAATGACAACAACGAACGAAAACTT
AACGCTATTACTATTATTATCCATATCGGACATTCAAACAACGTTTTTTT
CTAGCGTCAACCAATTCTTTTTGTTTCAATGCAATGTCTTCAACAAATTT
TTAGCACCTTGCGAGCGGGCTACAAATGACCAAAAAGTGTTTTTTCTGAC
GTTAGTTTAGTCTCTTTGCTTCAATGCAACGACTTCAATCCAATTCCGAG
CGGACCGCAAATGACATTATTGCCCTATACCCGGGCAGTTAATGATAGTT
TAGCCCTCTGAAGCCTGGCGCTTTAGTTTCCTTAGCGAGGGTATGACAAT
TTGAGTCACAAAACCTTTCAATACCGCCCGCCGATTGAACCTTTAATGGC
TTACTTTATGACCGCTATATGGATAATAATAATACTTTATTTAGAAAAGG
TCGCATAATATTTTCAAAGAAAAATGCATTAAGGTCCTTTCTCATCCTTT
GATATCTCGTCTTGAATTCTGATTGATTTTATTTTGTATTTTAGATCATT
TCTTGCGTGATCAGCAATCCCATCCTTACGCTATCTCACTTGGAGAAGTG
TGTTACTGAACGTTATCCAATGGGTTTCACAAACGAATTCCTTCAGCTCT
GGCTCAACGATACTGACTGTTTCTTAGGGTATGCTTTGGCATAATCTGTC
TTCCTAACAATTCTGTCCTTTTTCAGACAGGAATCAAATCACAGATATCG
TATGAAGACAAATATTTTAAGATATCTATGATTCAAACGTATGATAACCA
TACAGGGTTTTTTTTTCGAGTAAAAACCGTTCAGGGAGGGTGGAGGACAT
TTTCTTTAGCCGTACCAAGAGGTAGCGAGAAATTCGATGATCTTAAAATA
AGTCGGTGTTTCGATAGCCTTTACGACATCATTATCAAGTCTTGAAATTC
TGCAAACTAGCTTATGTAGAAAACTTGGTACATTGCTAAAAAAACTATAA
GATACATTTGGGAATGAAAACTTGTTATAAAACGATTAAAAACAATAGAT
TATACAAAAGAAATAAAATCACGTCGTTGACAGTCAAAATAATTGGAACT
CTTTGGAGGCTTTTGATTCCATTGTTAAAATATGCTTCTTTAAATTCTAT
TGTGTAACAGTATCCGCAGTGCCGATCACTTTTAAGTTGTCACGAACTAA
ATTCAACCTGAAATCGCTAGGGACAACATCATTCATAAACATATTGTTAA
ATGAAAATAGATGTTCACAATTCAAACAACTATCGAGATGGGATCGGATC
GCAGATTTTACAATATTTACAATATGTAGGAGTAAATGTTGTGTCCACAA
GTACATGGGCCAACTTTTTTCCTGAAAAACCCGAACTCCGTATTTTATAA
ATTAATAAAGCGTTTACTTACTTATAGTACCAAATTGTTGATTTCCTCTA
CTTTATTGATCCTATTTTTTCCTAATTTCACTTTTTTAATATTGTTATCT
TTCAGAATGCACGATCGCAAAGTCTATGTCTTCGGTATCTGTTCTCTGTT
AACGTTACCACCAGAAAACCGCCCTCAAGCTGTTGAATTATTCGCCCCTC
AATTCGTTCCCGCCCTTCTAGTTGTATTCAAGGGGCTCATCACCATGTAT
GAAAGTAAGTACAAGTCGCCTGGTATCTTCCCTGGATTGTTTCAAATAAA
AAAGCAGAGCGAGAATATTAGAGTATGTTTCTATTTGTCCTCTATGCACC
AAACTGTCAGGCTGCGAGACTTCGAAAGCAAGAACGGATTTCGATTGAAT
TATTGAGACGATTGGAATTTTATGACTTTGGAACAAGTGTTTCACGCAAA
CTCTAAAACTCCAAATAGCTTGAAAACTTATCCAAGTATCCCATACATTT
AATGTGGTTTTTCAAGTTACTTACAATCTTAAAATCTATCTGCTCAAATA
ACTAAGTAACAATCAATAATTTTTTTTCAGAATACGAGAAAGATATCGAA
GAAGAAACGGAAGAAAAACCAGCTGAAGAAGAAGGTACGCCTTTTTTACT
GATCAGCAATCTTCGATGATCTTTGGTTCAAAGATAATAATTTTCGCTGA
CTATAGGATATCAAATTTGAAACTTGAATGGAAATATTAGCCGTCCAAAG
AATTACATTGAATAATTTGTTCATTTTATAAGAACTCGAGACTGAAAATT
GGCCAAAACCTAAGAGCAATATTTAGCATCAGATTTTAGGAATTTAAGTT
TTTAAGTTTTTAAGTGAAGAAACTAAGCGTATAAGGAACATTTAAGCCTG
AACATATCAAAAAATTAAGAACAACCTAGCTTGAACCAATATTTACTGGC
TCGTATAAAAAAGCGAGTAAACCAAATATATTAGCGGTTTTAATGGTATA
ACTAAGACACTGGACATATATAAGTGGCCGCAATATGCAACGACGATCCG
GTGCTCAATGCTATTGCAAAATACTCAGATCATCCCGCTAGCATTATAAA
AATCAAAAATATTTTTGCTGGTAACTCTGTTCTTTTGCACTCAAAGATTG
CTTCAACTCTTGTCTCGACAAGACTATTTTCCCGGAATCCTTAAAAAGAG
CTACAATTACCCCGGTTCTTAAAGAAGGCGATCCGACGAGTGTTAAAAAC
TACAGACCTATTAGCATATTTCTACAGTATCCAAAGTATTTGAATAAATC
ATTGCCCAATAATTAAATCCTTTTTTAGAAAACTGCTTTTCAGATTTACT
GTGTGGCTTTCGAAAAGGACACAGTACGCAGCATGTTCTAGGCAAAGGGC
ACTTGATGATTCAAATATTGTGGGTACAATACTTATGGATTTATCGAAAG
CTTACGATTGTTTACCCCCTGATTTACTGATTGCAAAATTAGCAGCATAT
GGTGTTAACCACAATAGTCTTAACCAAAATAGTCTACAGTTTATTTATGA
TTATTTGATAAACCGTTACCATAGAGTCAAAATTGGAAATAGTTTGAGTA
GCTTTTTATCTATTAGTATGGGCGTTCCTCAGGGATCCATTTTAGGCCCA
TTTCTTTTTAACATATTTTTGAATGATCTCTTACTATCTGACCCAGGGGG
GGGGGTCCATGTACAAAACAGCGGCATGTATCAGTACTTTGTAGCAAATT
TCGATTTTAAACACCCACCCACCCCTATAGTACAAAATGTACAAAATACT
ATCCAGCAAACTCCCAAAAACACCCCAACACCCCCTATATTTTACAATAT
ACTATCCAGTACTATCCAGCAAACTCCCAAAAACACCCCAACACCCCCTA
TATTTTACAATATACTATCCAGTACTATCCAGCAAACTGCCAAATACATC
CTGACACCCCCTGTATAATACAATATACTATCAAGCAAACTGCCAAATAT
ACCCCAACACCCCCCTTACATAGTACAATATACTATCCAGAAAACTACCA
AATATACCCTACACCCCTTCATAAAATAAAAATTTTAAGCCAAAAAACTT
GAAACTTTGGGGCAAGTTTTTTATTCTTCCCATAAAAAAATTTCAAAAAA
TTTTCTCGAAAATTGACAAAAACAATTGAGAATTTAAAAAAATTTTCGAC
AAAAATCTAAAATAAATCACAATTTGATTTGATTTTGGCTTTTTAGTACA
CAAATACTAAGCAGAAAATCCGAAATTTGACCCTGACACCCCTTGTATAG
TACACGTACACTAAACAGCAAATTAGAAATTTGACCCTGACACCCCCACA
AGTACTAAACAGCTAAATTTTTTTGAAAACACCCACCCACCCCATGAGAC
ATGCCGCTTTTTTGTACATAGACCCCCCCTGTCTGACCGTGAAGCAGAAC
TCTGTAACTTTGCTGATGACAACACTCTTTCGCAATCGCTAAAGCCCTTG
CTGAAGTTATTTCAAAACTCAATATCGAAATTCAAGATATTTTGTACTGG
TTTAAAATCAATGGGCTTGTTGCGAATCCAGGAAAGTTCCAAGTTATGTT
TCTTGGTAGCTTTGAGCCTATATCTACTTTTAATATAGGAAATATCAAAG
TTAAGGTTAAAAATCAGGTCAAACTTTTAGGTATCTATATTGATAATAAG
CTACGCTTTAACTCTCACGTTGAATCAAAATGCCAGTCGGCGGGAAATAA
AATCAGCGCTCTTTGGCGCATCCGCCCCTTCATTTCTCTTAAAACAGCGA
AGGCCTTGTGTCACGCCTATATTTTTTCTAATTTCAATTATTGTCCATTA
ATTTGGATGAATTTTGTAAAACACAACAACAAACAAATTGGAAAAATTCA
ACGAAGAGCTCTTAGCGTAGTTTATGAAAACTATGGCTCTAATTTATATA
AATTATTAACTTTAACTAGAACTGCTTCTTTTCACATCAAATTTGTTCAT
AACATTCTTGAGGAAATTTATTTAACTCTTAAAAAACTAAACCCGCCTTT
CTTAGCTGAGCTCTTTGTCACGAAAACCTCGGGCTATAAACTTAGACGAG
GAGACCAACTTATGTTACCTTCAGCTAACACAGTTAAGTTTGGCTTACAA
TCTTTAAGTTTTGTTGGCTCCCTCATTTGGGATCGCCTCTCTAAGGATGT
GAAAAGCTCTGCAACGTTTAATACATTTAGGGGCAAACTAAAAATGTTGC
CAAACGATTTTTGCACCTGCCCAATATGTAAATTGTGGTAGATATTTAAG
ACTATTTTTATAAAAGTTGGATTTTACTAGTAACGGTTTAAGGCTGTAAC
TATTTAGGACGTTAGGTCCTTTACTTTGTGTACCAACTGAAAATAAATTA
ATAATAATAATAATTAAATGTAACAAAAATAGCACAAAATCATTACCTTG
TATTTCTCTCATTTTTAGAATTGAACGATTCGGACN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008278XLOC_008278Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014800-exon-sc0000198-1575043694:65790..65889TCONS_00014800-exon-sc0000198-1575043694:65790..65889Clytia hemisphaericaexon
TCONS_00014800-exon-sc0000198-1575043694:64372..64458TCONS_00014800-exon-sc0000198-1575043694:64372..64458Clytia hemisphaericaexon
TCONS_00014800-exon-sc0000198-1575043694:63362..63495TCONS_00014800-exon-sc0000198-1575043694:63362..63495Clytia hemisphaericaexon
TCONS_00014800-exon-sc0000198-1575043694:62386..62534TCONS_00014800-exon-sc0000198-1575043694:62386..62534Clytia hemisphaericaexon
TCONS_00014800-exon-sc0000198-1575043694:62006..62059TCONS_00014800-exon-sc0000198-1575043694:62006..62059Clytia hemisphaericaexon
TCONS_00014800-exon-sc0000198-1575043694:59154..59171TCONS_00014800-exon-sc0000198-1575043694:59154..59171Clytia hemisphaericaexon
TCONS_00014800-exon-sc0000198-1510915933:65790..65889TCONS_00014800-exon-sc0000198-1510915933:65790..65889Clytia hemisphaericaexon
TCONS_00014800-exon-sc0000198-1510915933:64372..64458TCONS_00014800-exon-sc0000198-1510915933:64372..64458Clytia hemisphaericaexon
TCONS_00014800-exon-sc0000198-1510915933:63362..63495TCONS_00014800-exon-sc0000198-1510915933:63362..63495Clytia hemisphaericaexon
TCONS_00014800-exon-sc0000198-1510915933:62386..62534TCONS_00014800-exon-sc0000198-1510915933:62386..62534Clytia hemisphaericaexon
TCONS_00014800-exon-sc0000198-1510915933:62006..62059TCONS_00014800-exon-sc0000198-1510915933:62006..62059Clytia hemisphaericaexon
TCONS_00014800-exon-sc0000198-1510915933:59154..59171TCONS_00014800-exon-sc0000198-1510915933:59154..59171Clytia hemisphaericaexon
TCONS_00014800-exon-sc0000198-1491911889:65790..65889TCONS_00014800-exon-sc0000198-1491911889:65790..65889Clytia hemisphaericaexon
TCONS_00014800-exon-sc0000198-1491911889:64372..64458TCONS_00014800-exon-sc0000198-1491911889:64372..64458Clytia hemisphaericaexon
TCONS_00014800-exon-sc0000198-1491911889:63362..63495TCONS_00014800-exon-sc0000198-1491911889:63362..63495Clytia hemisphaericaexon
TCONS_00014800-exon-sc0000198-1491911889:62386..62534TCONS_00014800-exon-sc0000198-1491911889:62386..62534Clytia hemisphaericaexon
TCONS_00014800-exon-sc0000198-1491911889:62006..62059TCONS_00014800-exon-sc0000198-1491911889:62006..62059Clytia hemisphaericaexon
TCONS_00014800-exon-sc0000198-1491911889:59154..59171TCONS_00014800-exon-sc0000198-1491911889:59154..59171Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000198supercontigsc0000198:59154..65889 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
31.5348	34.008	3.76183	3.58164	22.8215	21.5946	25.4818	30.8418	29.3201	32.0781	43.7354	46.1991	99.5027	89.956	60.0408	56.1305	51.2173	52.7135	50.0802	57.4802	81.4452	70.8391	51.9804	59.4594	64.0869	62.1243	39.3656	41.1405	42.8577	43.8311
Blast
[Close]
BLAST of TCONS_00014800 vs. Swiss-Prot (Human)
Match: IPO8 (Importin-8 OS=Homo sapiens GN=IPO8 PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 7.158e-36
Identity = 73/145 (50.34%), Postives = 94/145 (64.83%), Query Frame = 2 
Query:   23 TGEGAQCQAAKLLEVIVLQYRGH-LDSTIPAFISLCLERLSMDLKTSELRVMLLQVIISCVISNPILTLSHLEKCVTERYPMGFTNEFLQLWLNDTDCFLGMHDRKVYVFGICSLLTLPPENRPQAVELFAPQFVPALLVVFKGL 454
             GE A+C AAKLLEVI+LQ +G  +D  IP F+ L LERL+  +KTSELR M LQV I+ +  NP L L  LE+      P   T +F+  W+NDTDCFLG HDRK+ + G+  LL L  +NRP AV+    Q VP++L +F GL
Sbjct:  730 AGEDAECHAAKLLEVIILQCKGRGIDQCIPLFVQLVLERLTRGVKTSELRTMCLQVAIAALYYNPDLLLHTLERIQLPHNPGPITVQFINQWMNDTDCFLGHHDRKMCIIGLSILLEL--QNRPPAVDAVVGQIVPSILFLFLGL 872
The following BLAST results are available for this feature:
BLAST of TCONS_00014800 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IPO87.158e-3650.34Importin-8 OS=Homo sapiens GN=IPO8 PE=1 SV=2[more]
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