TCONS_00015024 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015024
Unique NameTCONS_00015024
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1045

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015024 ID=TCONS_00015024|Name=TCONS_00015024|organism=Clytia hemisphaerica|type=transcript|length=1045bp
GTTCAAGATGGACGTGTCGCAGAAAAAGGTACTCACGACGAATTAATGGC
ACGTAAAGGTGTTTACTATCAGTTGGTCATGCTTCAAACGTTAGCTGAAC
AAGAAGAACACGAGCTCTCAGAAACTGGATCCTTGATCACTGAAGAAGAA
AGAGAGGCACTTCTTCAGGTGCGCATGATGAGAAGTCTTTCACAAATGTC
TGGCGAACAGGGAGCATCAATTGAAGATATCAGTTTCGCAAGAGCACTAT
CCGTGCGTAAGAGTAAATCAGATCGAAAGAAAAGAACTAAGAAAGTCAAG
AAGAAATCGAAGAAAGAGGCTTTAATAGAAGAAGCAGTGGATCCAGCACC
CATCTCACGGGTGTTATCTTATAATAAACCTGAATGGCATTTGATGGGAA
TGGGGTTGATATTCTCAGCAATGCATGGATGTATTCCTATATTCTTTGCT
TTCATCATTGGTCAAGTCCTCGGGGCACTAGCTTTACCAGACAAGGAGCA
AATCAAAGAAGAATCAAAGAAATGGAGTTTAGTCTTCTTAGCTATGGGGG
CTGCTAATTGTATCGGTTACGGAATGGGGAATTATCTCTTTGGAAAATCT
GGTGAACGGTTAACAAGACGCTTACGTTCCAAAGCTTTTGAATGCATTCT
CAAACAGGATATTGCATATTTTGATGACCCGTACCATGGCACCGGACAAT
TGACAGCGCGACTCGCCACTGATGCTTCTAAAGTCAAAGGGGCAACTAGT
TCACGGATTAGTGTCTTAGTACAAGTTTCATTCACAGCTTTGTCCGCCCT
GTTTGTTGCGTTTTACTACTCTTGGAAACTAACGCTTTTGGTCATCGCCT
TCGTTCCCTTTTTGGTGTTCGGCGGCGTCATGAGGGCCAGTAGGTTCAAG
AACTTTGCAGCGAAAGAAGGCAAACGGTTATTGGAAGCTAGCGCGGTATC
ACAACAAGCTTTGATGAATATTCGGACAGTCGCATCACTGGGCAAAGAAG
ATTACTTTTATGAACGATTTTCATGCCTTTTACAAGAGCCTTATC
Run BLAST on NCBI

transcript from alignment at sc0000203:73304..81951+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015024 ID=TCONS_00015024|Name=TCONS_00015024|organism=Clytia hemisphaerica|type=transcript|length=8648bp|location=Sequence derived from alignment at sc0000203:73304..81951+ (Clytia hemisphaerica)
GTTCAAGATGGACGTGTCGCAGAAAAAGGTATTTCAACAGAGCAATATTT
TCTGCTGACTGAAAACTTTAGGTTTATTCACAATGAATCTGATGTCAACT
TACAGCCCCGATGAAACTCCCGACAGCGGGGATAAAATCTTCCCATCGAA
ATCTCATCGAAATCATTAGGATAGAATTTACATtgtttcaagttttaaaa
attcagattttgGAGTGCGATTTTTTACATCGAATTTCGAatgaggataa
aatcaaagtgGAACTGAATTTGAAGGGTATTTTTTGTCCACGGGGACGAA
ATTTCGACCAAATTTTCCTGTGGGGCCGGGATCGCAATGGGCCTGTGACA
CAGTAGTACTCAGTTTTAAGGTCTTATAGTATTGGGGTTTGGTTTACAAA
AGCTTCTTTCTGATTAGTAGCTTTGAAATCTTGAGATAAGTCGcaacata
gtataagaaagccgcggctttcttatactatggtcgCAATTATATCATAA
ACAAACTAAATGATTCAATAAATATTCACCTTTCGTTCCTTCACAGGTAC
TCACGACGAATTAATGGCACGTAAAGGTGTTTACTATCAGTTGGTCATGC
TTCAAACGTTAGCTGAACAAGAAGAACACGAGCTCTCAGAAACTGGATCC
TTGATCACTGAAGAAGAAAGAGGTAGGGTTAGAAGTAGCGTAGAGAGGAa
gggtgcaaaatttgtgtaaaagagcagatttttataacGCAGCAATTATc
cattcataatataaaaataaaattagtgTCATAAAAAGCTGCTCTCCTAC
GCAAATTTTGCGCCCTACTGGGTTAGTTGCGCCCTACTGGGTTAGACTGT
CAGCATGCCTGTAATATATTTTGTTACAAAACTAGTTCGCTAATTTGAAG
TCGAATGGGGAATCTTATTTGCTCGAGTAActgagagattcgaattatag
agagtgttTCATAAGGGCTACTCCCTGACGGGAACTGAGAaaaggttcga
attataaaagattcgaataatagaagttcggaATAAGCGAGACTCGGATC
TATTTAGGGATACGTGCAGCCTTAGTGTggatttgtaaattttgaactAA
ATAAGACACTTTCTGTACTtttgagggtgtgaaaaaggagCGATTGAGTT
CCTTGAGAGATGTAACTCTTGCAAACGCACGACTTTTTGATTCTATTTTT
TCCTAAACGTTTTTTAGTGTTATTGCAACCCTGCCTGGGACTGAAGGGAG
TGAATAAGTTATCAACCATGTCCGGCGGCATTTTTTGTATCCCATTTTAC
CCCGTACCAACCTTGCTTCAACAtgttaaaaaatgctgaaaacaaGGAAG
TGTTTCAACAAGGTGTGGGAAGTACTGAAGTGTGGAGTCTCAAATACGCA
CGGGGAAAACAAAATTGTTCGtgttaaagaaattttgagttatagagtaa
ggttTAAATGCGACACTGTTAACTGAAGGGAGcataactttttcgagtta
agaagacattcgagttgtcgaggttcgagttatggagactacaCTTTATG
AATCTGAATTTCTCGTATTTCAGAGGCACTTCTTCAGGTGCGCATGATGA
GAAGTCTTTCACAAATGTCTGGCGAACAGGGAGCATCAATTGAAGATATC
AGTTTCGCAAGAGCACTATCCGTGCGTAAGAGTAAATCAGATCGAAAGAA
AAGAACTAAGGTATATATGACATGGTTTCAGGTGTTATAATTTTCATGCT
TTCAATAGCATGATCAATTAATTTACAGAGCAGCAGGGTATTTTCTATTC
CATTTTCGTGAAAATAATCATGTTTATAAAAACCCTTTTTGTgccaatgt
cggatatatccaaCCGACATGCGCGTTATATGACAACCATTTTGATCGTC
TTTTGTTCGAGGTTGATATAGGTGTATTGTGCTTCATTCTTTTGAGATTT
AAACGATTTCATATCAAGTTTGAGCTATGGtcaatttttctcaaagaaaa
ttgaaagaCCCTGGCAATTAGAACGGATAAATTGACTAATATATTATAAT
TTCTATTCAAGAGGCCCCACAGCGGACCTTCACTTCACGCAATCAGAcaa
atacttttttcaaaattcacgcattcgcgcattttttaaataatttttta
cgcattcacgcaaatgaaaaagcccattcacgcatttacGCAAACAGCTC
GATGGGTATTTAACCCATTCCAACATCATATTTGAtgcaaatttcatttt
atttttaacagAAAGTCAAGAAGAAATCGAAGAAAGAGGCTTTAATAGAA
GAAGCAGTGGATCCAGCACCCATCTCACGGGTGTTATCTTATAATAAACC
TGAATGGCATTTGATGGGAATGGGGTTGATATTCTCAGCAATGCATGGAT
GTATTCCTATATTCTTTGCTTTCATCATTGGTCAAGTCCTCGGGGTAAGT
AATTATATTCCATGTTTTTCGAAGTATTTAGCGATATGTACTTATAGTGA
GTTTCAGTCAATAGTTAGCTTTTCTCCTCGTTTTTTTTTGTATGGAACGG
TCAGCTACATTCTTTATCTACAAATTATCTATGAACAAAAAAACCCAAGG
agatgaatgaatgaacgaatAAATTAGTGGCGGTGTACCAGGGTCCTGCA
CACCAAAATACTGACagttcttcacacaaaaattcgaaaatgagATAAGA
AGATAAGAGGgattttctgagaaatttgatttAGCACCGTTTCTCAGATG
TTTTAAGCATGTTTTAAGCAAAATTACCGAATCACCGAtttaaaatttaa
cattttccgtCACCAAAAAGCATCtcaaacaccaaaataccgacACATTT
TTTGTTGATCACCAAAATAAGGTCAATACAAACACACACGCATTTTAAGC
AAATATCAATCTTTCAGTCTCTTTCggctcgttttttttttttttttttt
ttttttggggtttTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttgtatata
tttttagtaGATATACCGAGATTTTTGGTGATTAAAGagacataaataaa
aaaaaaaaaaacaccgacaAACAATGAATGAATCAActaaattttgaatg
aattttttttaaattcttgtTTCAGGCACTAGCTTTACCAGACAAGGAGC
AAATCAAAGAAGAATCAAAGAAATGGAGTTTAGTCTTCTTAGCTATGGGG
GCTGCTAATTGTATCGGTTACGGAATGGGGGTGAGACCAAGTCTTTTGTT
GTTATAACAATTAATCCGTCTAGTCTATGatatttttgcgatttttggcC
TAAAGGGCTActttagactacacaatattcgacaatatggtttgcggacc
gtaatgtacgaactAAACAACTgatactctattataaaaaggagtTTTCT
TTCTGTGAACACTCCtcctttattgttggaatattgaaaatctatattgc
gaatatattttcaatataTAATTCAGCAAGATTTCGTTAATATATTGCCA
GGCAATATATTCTGTAGTGTAGTGTATGTAACCCTTTATTATTTTGTCTA
TTTCAAAAGTTCTGAGCAAAACATCCAGCAATTTAAGATTTGCCCATACC
TGTTGAATGTATCCAAGACATTTTACCAGATCCTTTGCTTATCGACTTTT
TATAGGCTTGAGATAATGGGTACAGCAATTTTGATTGAaacattaaatca
aaagttTATTCTTATATCTTCTTTGATTCAGAATTATCTCTTTGGAAAAT
CTGGTGAACGGTTAACAAGACGCTTACGTTCCAAAGCTTTTGAATGCATT
CTCAAACAGGTAAAGTAGTCgctaaataaatatttataatCAACTGGCTG
CACGAAAAGAGTggtttctttttcattcaagACTGTGCCAATATCCCGGG
GAGTGGGAGCTACCATCGACCTACTCAGTCAAAATGACGTAGGGGTTCGA
CAATAATATCAACAAAATTCTCAGGGTCTTACAAACATAACGCGCTTTTT
Atcttataagaatggtgtaaatccatttcatcatggatattcttaacttt
tttgggaaaatcatcctaaaatattcttacagcaatcttaggttagaatc
ctaattcagactagatttaacatttagtacatacgtctcaagcataaaat
ggcatttttgtgaaagggttgagccttacttgggggtaattggcaattta
tgattgaaaatactctaaaaatggcattcttagcttaagtagcaaaattc
catgagtgatattcttaccatattcttaatttttgaccattttcatcatg
gaaattcttataaagtgtattcttataaaaaaaagtgtgtaaacAATTTT
TTCGTGAAGGGTTGGTTTTTGTTTCAGACATTCCCGTCATCTGGCTAATC
TTTGCTCAAGGGTTACTTTTGACATAAAATAAGTTGAAAATCCCGATTAT
TTGGGTTTTATAAACAACCGTGACATGCGCACAATTCTTTACTGTGATGT
AGTAGGAAAAGATTGATATTATTAGATTTTAATGAATTTATGTCTTTCAT
TTTAGGATATTGCATATTTTGATGACCCGTACCATGGCACCGGACAATTG
ACAGCGCGACTCGCCACTGATGCTTCTAAAGTCAAAGGGGCAACTAGTTC
ACGGATTAGTGTCTTAGTACAAGTTTCATTCACAGCTTTGTCCGCCCTGT
TTGTTGCGTTTTACTACTCTTGGAAACTAACGCTTTTGGTCATCGCCTTC
GTTCCCTTTTTGGTGTTCGGCGGCGTCATGAGGGCCAGTAGGTTCAAGAA
CTTTGCAGCGAAAGAAGGCAAACGGTTATTGGAAGCTAGCGCGGCAAGTA
CATTTTTGCAAGTGATTACTTCATCCctttctcagtgacccggtggcgTT
TTAAAAACCCAGTTAGATTTCGAAATTTTGCAATGGTTGGAAAAACATCA
ATTTTGACAGGGTTCACTCAACACCCCACTGGGGATCAAAATTAggttat
tttggcgatttttttCGAGTTATCCCCCGGGCGGATCTTGGTCACAGATT
CACAGATGTATGGGTGTACATTCATTCTTGACTAAGCCACAAACAATTCG
AGCCTCGCTTTTGAAAGTGATATTACGTTAGAGATACATCTTAAACAATA
CCTTTAaagaaaacacccccttctcacagacccggttggATTCTTTtaac
cagtggggataaaaatattggaCTGAccctcgatggggattgatataaGG
TAAAGGGTAAAGCCAATGAagaataaattctaaaaaatagaaaatgtcTT
AAAAAGATCTTCAAAATCAACTTTGTTTTGNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNccgccaaccatgaaaccccccccttcTAAGAt
gccgggtgcgccacaaaaaagtttctctctttaaaactaattttctcgaa
atctaaacatttttaaaagaatcattcctaCTCCAATGGAAAGAAGAAGG
ATAGACTTAAATTCTTCTTTCCAATAGGTCAGGCAtggttctttttaaaa
tttaagatttcaagcaaatcagtttcaaagagagaaacttttttgtgccG
CACCCGGTACATAGTTGTAATAGCTTATATTTTTCTAAGTTCAGGCGATA
TAATTACGAAAAATCTAACAACTGTTCTGGTCTAGCATAACAATACTTTC
TGTTCATTCTAATTTCaatagaaaatcaaaaacacAAGCACACTGGTACG
GTGTTACGTTTGGTTCTGCACGTGGTTTATCATTCTTCGCCAACTCCGCC
GCCTTTGCATTGGGCGGTTATTTGGTTCAAAATGATGAATTGGGATTTCA
AGATGTTTTCAAGTAAGTATTCATATTCAGGTCAAAATCTTAAGCAAGAC
TTTATGAATTGGGTTATTCTGGAAATTTCTACCCCCTTTGTTGAggtctt
tttttggaaaattgactccctaaatttttttttcaatttttttgaaaaac
gtgGATTTTTGACCCTGTTTTaatgaccaccctggattttcaaccttaTT
TTACCGAAAACCCTGGATTATTACACTCCAAAAACTAGACCCCCAGATTT
TGTTTATTTCCAAACCACCCTGGACGAACACACCTTTTCAACATGGGGGG
TAAAGAATATTTCTGAAATAGCCCCCTTCTAACAGCTTCTGATCAATCAA
ATTTACTTCGCTTCCCGATTGGCTTCGGTTGGATTCAATAGCTAGCTAGA
TTTGGATTTGATTGATATTGATGGTTTACCAATTGAAATATCTAGGAGTT
TGTTCGCAAGTTAATCGCAGATTAAAtaaatcgaatacaatcaaattaaa
ttttatcaGACTTAGGGGCTGTTCATAGGGAGGCGGACTGGCCCGTATAG
GTCCAGTCCCTTAGATGAAGGTTTCATTGGATGAACTCGTTCAATTCCAT
CCAGTCAGTTTATTGGCTGTGATTACTTCGACTGAATTAATTGTAAATCA
TAATTCGTATGGATTATTTTGTTCGTTTCCATTGGAGCCCGGTATGAACA
CTAACACGTAACATTAAATGTGGACATTAACATAACCtgtcaaattaaaa
aagatcGAAAAGTCTAACCTTATGTTTATTGTTGATTGTAGAATCATTAT
CGCAGCCACATTTGGATCCATGATCGCTGGTCAAGCGTTATCCTTTACAC
CAGATTACCTTTCAGCAAAAGTGGCTGCTGGTCGTTTGTTCAAGCTCTTC
GATACTGAATCCAAAATCGATGTCAATCAACCTGGTGGAAAAATCAaggt
tcaaaaattttacacgctttttctataagaatggtgtttNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNCCTTTAaagaaaacacccccttctcacagacccggttgg
ATTCTTTtaaccagtggggataaaaatattggaCTGAccctcgatgggga
ttgatataaGGTAAAGGGTAAAGCCAATGAagaataaattctaaaaaata
gaaaatgtcTTAAAAAGATCTTCAAaatcaactttgttttgatgacagGT
ATCACAACAAGCTTTGATGAATATTCGGACAGTCGCATCACTGGGCAAAG
AAGATTACTTTTATGAACGATTTTCATGCCTTTTACAAGAGCCTTATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008410XLOC_008410Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015024-exon-sc0000203-1491911889:73304..73331TCONS_00015024-exon-sc0000203-1491911889:73304..73331Clytia hemisphaericaexon
TCONS_00015024-exon-sc0000203-1510915933:73304..73331TCONS_00015024-exon-sc0000203-1510915933:73304..73331Clytia hemisphaericaexon
TCONS_00015024-exon-sc0000203-1575043694:73304..73331TCONS_00015024-exon-sc0000203-1575043694:73304..73331Clytia hemisphaericaexon
TCONS_00015024-exon-sc0000203-1491911889:73850..73975TCONS_00015024-exon-sc0000203-1491911889:73850..73975Clytia hemisphaericaexon
TCONS_00015024-exon-sc0000203-1510915933:73850..73975TCONS_00015024-exon-sc0000203-1510915933:73850..73975Clytia hemisphaericaexon
TCONS_00015024-exon-sc0000203-1575043694:73850..73975TCONS_00015024-exon-sc0000203-1575043694:73850..73975Clytia hemisphaericaexon
TCONS_00015024-exon-sc0000203-1491911889:74877..75013TCONS_00015024-exon-sc0000203-1491911889:74877..75013Clytia hemisphaericaexon
TCONS_00015024-exon-sc0000203-1510915933:74877..75013TCONS_00015024-exon-sc0000203-1510915933:74877..75013Clytia hemisphaericaexon
TCONS_00015024-exon-sc0000203-1575043694:74877..75013TCONS_00015024-exon-sc0000203-1575043694:74877..75013Clytia hemisphaericaexon
TCONS_00015024-exon-sc0000203-1491911889:75565..75747TCONS_00015024-exon-sc0000203-1491911889:75565..75747Clytia hemisphaericaexon
TCONS_00015024-exon-sc0000203-1510915933:75565..75747TCONS_00015024-exon-sc0000203-1510915933:75565..75747Clytia hemisphaericaexon
TCONS_00015024-exon-sc0000203-1575043694:75565..75747TCONS_00015024-exon-sc0000203-1575043694:75565..75747Clytia hemisphaericaexon
TCONS_00015024-exon-sc0000203-1491911889:76879..76983TCONS_00015024-exon-sc0000203-1491911889:76879..76983Clytia hemisphaericaexon
TCONS_00015024-exon-sc0000203-1510915933:76879..76983TCONS_00015024-exon-sc0000203-1510915933:76879..76983Clytia hemisphaericaexon
TCONS_00015024-exon-sc0000203-1575043694:76879..76983TCONS_00015024-exon-sc0000203-1575043694:76879..76983Clytia hemisphaericaexon
TCONS_00015024-exon-sc0000203-1491911889:77485..77562TCONS_00015024-exon-sc0000203-1491911889:77485..77562Clytia hemisphaericaexon
TCONS_00015024-exon-sc0000203-1510915933:77485..77562TCONS_00015024-exon-sc0000203-1510915933:77485..77562Clytia hemisphaericaexon
TCONS_00015024-exon-sc0000203-1575043694:77485..77562TCONS_00015024-exon-sc0000203-1575043694:77485..77562Clytia hemisphaericaexon
TCONS_00015024-exon-sc0000203-1491911889:78309..78596TCONS_00015024-exon-sc0000203-1491911889:78309..78596Clytia hemisphaericaexon
TCONS_00015024-exon-sc0000203-1510915933:78309..78596TCONS_00015024-exon-sc0000203-1510915933:78309..78596Clytia hemisphaericaexon
TCONS_00015024-exon-sc0000203-1575043694:78309..78596TCONS_00015024-exon-sc0000203-1575043694:78309..78596Clytia hemisphaericaexon
TCONS_00015024-exon-sc0000203-1491911889:81852..81951TCONS_00015024-exon-sc0000203-1491911889:81852..81951Clytia hemisphaericaexon
TCONS_00015024-exon-sc0000203-1510915933:81852..81951TCONS_00015024-exon-sc0000203-1510915933:81852..81951Clytia hemisphaericaexon
TCONS_00015024-exon-sc0000203-1575043694:81852..81951TCONS_00015024-exon-sc0000203-1575043694:81852..81951Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000203supercontigsc0000203:73304..81951 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.160944	0.000552022	0.0388236	0.0372544	0.429546	0.186654	0.225916	0.514281	1.07265	1.29692	3.20369	0.576923	9.91061	10.9841	3.37427	4.40523	7.34074	2.66834	0.857254	2.45126	5.66586	8.77876	2.54233	4.51419	2.23704	2.83843	10.5019	14.4461	1.62407	0.238493
Blast
[Close]
BLAST of TCONS_00015024 vs. Swiss-Prot (Human)
Match: ABCBB (Bile salt export pump OS=Homo sapiens GN=ABCB11 PE=1 SV=2)

HSP 1 Score: 221.476 bits (563), Expect = 1.062e-63
Identity = 127/352 (36.08%), Postives = 204/352 (57.95%), Query Frame = 1 
Query:    4 QDGRVAEKGTHDELMARKGVYYQLVMLQTLAEQEEHELSETGSLITEEEREALLQVRMMRSLSQMSGEQG--ASIEDISFARA--LXXXXXXXXXXXXXXXXXXXXXXEALIEEAVDPAPISRVLSYNKPEWHLMGMGLIFSAMHGCIPIFFAFIIGQVLGALALPDKEQIKEESKKWSLVFLAMGAANCIGYGMGNYLFGKSGERLTRRLRSKAFECILKQDIAYFDDPYHGTGQLTARLATDASKVKGATSSRISVLVQVSFTALS-ALFVAFYYSWKLTLLVIAFVPFLVFGGVMRASRFKNFAAKEGKRLLEASAVSQQALMNIRTVASLGKEDYFYERFSCLLQEPY 1044
            + G   E+GTH+EL+ RKGVY+ LV LQ+   Q  +E         E+ ++A     + R+ S+ S +    ASI   S ++   L      +    ++   + +  K+  ++E V+PAP+ R+L ++ PEW  M +G + +A++G +   +AF+  Q+LG  ++PDKE+ + +     L+F+AMG  +     +  Y F KSGE LT+RLR   F  +L QDIA+FDD  +  G LT RLATDAS+V+GA  S+I ++V  SFT ++ A+ +AF +SWKL+L+++ F PFL   G  +      FA+++ + L     ++ +AL NIRTVA +GKE  F E     L++P+
Sbjct:  630 EHGTAVERGTHEELLERKGVYFTLVTLQSQGNQALNE---------EDIKDATEDDMLARTFSRGSYQDSLRASIRQRSKSQLSYLVHEPPLAVVDHKSTYEEDRKDKDIPVQEEVEPAPVRRILKFSAPEWPYMLVGSVGAAVNGTVTPLYAFLFSQILGTFSIPDKEEQRSQINGVCLLFVAMGCVSLFTQFLQGYAFAKSGELLTKRLRKFGFRAMLGQDIAWFDDLRNSPGALTTRLATDASQVQGAAGSQIGMIVN-SFTNVTVAMIIAFSFSWKLSLVILCFFPFLALSGATQTRMLTGFASRDKQALEMVGQITNEALSNIRTVAGIGKERRFIEALETELEKPF 971
The following BLAST results are available for this feature:
BLAST of TCONS_00015024 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ABCBB1.062e-6336.08Bile salt export pump OS=Homo sapiens GN=ABCB11 PE... [more]
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