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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015028 ID=TCONS_00015028|Name=TCONS_00015028|organism=Clytia hemisphaerica|type=transcript|length=2350bp TTGACACACAAGTCAACATGTCAACTTAGGGGACAGCAACACAACACTTT CACATGACACATACATCAATAATCATTTTCTCTTGAAACATAACGTACGA TTTTCGCgaaataacaatattttgatttttgttacaaacaagAAGATACT ACAATATTTTGTTGTATACATTGGCGCGTGATATTGAACATTCGACATTA TGATTTGCAGTGTATTTAACAAATCTTGTTCCGTAATGACAACAGGATTA ATGATTTTCATTCTCGTACTAACGACGCTTACATATTTGACTGACTGTAA GCCGACAACTTCTAACGACTTTGTAAATACGACGACGACTTTATGGACGA CAGAAGCAGTTAACACGACACATCGACCTTCAACGACGATTGACACTTTG TCGGATTTCCCAGAATGGGTCATTGACTATTTGGTACGTTATGGCTATAT GGATGAAAAACGTGcctacaaaataaacaaaacaccTTTCAACGCTGCCG ACAAACTATCGTACAAGCGTTCCGAACTCGAAGCAGGTTTACGCGAATAC CAAGATTTTATGACTTTGCCGACAACCGGACGATTGGATAAACGGACTAT GGAAGCGTTACATAAAAAACGATGCGGAATGCCGGATAAAGTACGACGGG ACGACACGACGTTTAAGATGTCTTTGACGCCGACGGGACAACGCAAGAAA CGCGATTTGGTTTTACAGAAGGTCGATAAAAACAAGAAAGGCAGTGGTTT TGCATCATCGAAAACTACCAGAAGATTTTACTGGAATATCAATCCAAAAC CTAAATATGGTGGTTTATTGAGACCAAATATATGGCTCAGTTTGGAATAT GCATTCAACCGGTGGGCTTCAGTCACTGACGCTGTATTCATTCGTGGCGA TCGCTTAAACTGGAGTGATATCTTGATCGGGTTCTGGACTAAGGACCATG GTGATGGCAATCCATTTGACGGCCCCGGTGGTACGGTGGGCCATGCTGAC GTCTCCAACCGAAACGTACATCTTGACGAAGAGGAAAACTGGGGTGCAAA ACCTGAAGATATTTTCTTGTGGTTACATCCTAGTAAAGGAACAGACTTCA TTCAAGCTGCCATTCATGAAATCGGTCATGTTCTTGGTTTATCGCACGAT AAAGACTCCGACTCGGTGATGTTCCCAACACTACAACAATTCCAACCACT ATCATATTACAGCTTATCGACAAGTGACATGAACAGAATTAAATCGTCGT TTGGACGATGTGAGCCAGATGTGATAGACGCTATGTTTGTTAACAAATTT CTTGATGGAAAAACCTACATAATTAAAGGTCCCTTTATTTATCAAATGGA TGAAAGAAAACGGGAAGTTGTTCAGTCATGGCCACGTGCAACCACTCTCC CCTTTTTGGCACCTACATTTGTTGACGAAGCTTTCTGGCATACTGATCAT TTCCTATACTTTTTTAATAAAGACGGTTATTACATTTACGATTCAACCAA CGATCCCACAGTAAACCGCAGTCCTCTGTTCAATCTGAACAAGAACGGTT ACGATGTAGGATTCCGTGGCCTAAAGCATCACAAATATATTGATGCAGCT ATGGTGATGGATTACAAAGACGACATAACCGGCAAAACAAAACCTACTTC TTTCCTTTTTCAAGACGAATGGGTCTACAAATGGGACAAAGTCGAAACTA ATTGGCAACGTAGCATCATCCCTGCCGAAAAAGTAGCCGACGGTTGGCCA AAATTAATTAGAAATGTATTCCCAGGGCTTCCAGGGCGTATTGATACTGC TTTTACATGGAGTTATGATGGTAGAACATATTTCTTTGTTGGTAGATATT TTTATATTTGGGATCCGGTGAAAAATATTGCCGATGGACTTTACCCAACT TATCAATGGCAGAATGTATGTGAGATATATCTTTGCCAAGTGGCGCCCAC ACCTAATGTCTACAATTGCGAGAGTTGGGACCTAACCATGGATAATTGTC ACGGTTATTGTCATAATTAAATAAACGTTTTAGATTGTTAGATTGGGTTA GCGAACTGCCTAGTACAAAGCTAGGAATTACCAGATTTTAACTGTGGCTA AACGTCCAGATTAATCAAATTATCGGCAGAACTAAAAATTTGTAGATATA TGTAAAGAATATTTTTCCctgtaaatttttatttgtacataactcttttt tttttgaaagtttaaataTTGTTTCCCAAAACATTTTGTTCTTGTTCCAA AATTTACCTTATTTATAATATGTGTTATAAGTATATCCTTATTGTAGAAC CCCTAGATCACACACTGCACTGAAATCAGTGATACTTAGCAAACTCGCCA Run BLAST on NCBI transcript from alignment at sc0000203:116553..122409+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015028 ID=TCONS_00015028|Name=TCONS_00015028|organism=Clytia hemisphaerica|type=transcript|length=5857bp|location=Sequence derived from alignment at sc0000203:116553..122409+ (Clytia hemisphaerica) TTGACACACAAGTCAACATGTCAACTTAGGGGACAGCAACACAACACTTT
CACATGACACATACATCAATAATCATTTTCTCTTGAAACATAACGTACGA
TTTTCGCgaaataacaatattttgatttttgttacaaacaagAAGATACT
ACAATATTTTGTTGTATACATTGGCGCGTGATATTGAACATTCGACATTA
TGATTTGCAGTGTATTTAACAAATCTTGTTCCGTAATGACAACAGGATTA
ATGATTTTCATTCTCGTACTAACGACGCTTACATATTTGACTGACTGTAA
GCCGACAACTTCTAACGACTTTGTAAATACGACGACGACTTTATGGACGA
CAGAAGCAGTTAACACGACACATCGACCTTCAACGACGATTGACACTTTG
TCGGATTTCCCAGAATGGGTCATTGTAAGTGTATTTGTAGTTTCTTTGGA
ATTTTGTTTCGATAGTTTTTCGTCTGCAATACTGAGgtttcaaaattcac
tttttcatttttgcgtagttatgacaaaaaaaacgaTTTAATAAACTCTT
GATTAGCAGAAAAGGGTGGACATTGAAAATAATATACCGATGTTTATACT
ATAGCCCAGCAGAGATTCATCACATCGACTTTTCCCTCGTGTATCAAAAT
CAGTGAACATTTAATATAATAAGGAGCAGGACATTTTAGTCGGATCGTTG
TTTTTGTTATTGCTCTCGATATAAGAAGCCAACCGATTTCCTTTAAACCC
ATTTTGCTTACATCATCCTTGGAAGAAACCGAAAAAttgtttgtcaaaaa
aaaaggttagaGATAGAGGGGCGTGGGTAAGAATAAGCCAAAAGCCGACA
GTTAAAGTATACTTGGGTGGTCAAAGCCTTGACTGGAACCAATAAATGAT
GTCTTTAGCTTAGAATTTAAAACCTATATTCTCGTTTAGGACTATTTGGT
ACGTTATGGCTATATGGATGAAAAACGTGcctacaaaataaacaaaacac
cTTTCAACGCTGCCGACAAACTATCGTACAAGCGTTCCGAACTCGAAGCA
GGTTTACGCGAATACCAAGATTTTATGACTTTGCCGACAACCGGACGATT
GGATAAACGGACTATGGAAGCGTTACATAAAAAACGATGCGGAATGCCGG
ATAAAGTACGACGGGACGACACGACGTTTAAGATGTCTTTGACGCCGACG
GGACAACGCAAGAAACGCGATTTGGTTTTACAGAAGGTCGATAAAAACAA
GAAAGGCAGTGGTTTTGCATCATCGAAAACTACCAGAAGATTTTACTGGA
ATATCAATCCAAAACCTAAATATGGTGGTTTATTGAGACCAAATATATGG
CTCAGTTTGGAATATGCATTCAACCGGTGGGCTTCAGTCACTGACGCTGT
ATTCATTCGTGGCGATCGCTTAAACTGGAGTGATATCTTGATCGGGTTCT
GGACTAGTAAGATACTTTTTGTTGATATTTATATAATCTTGGTACCCTTG
AATCTATACATACTTCTCTCATCATCGATAAACTTGAAAGACCCTCAGCT
GAAAGCTGCACCTGAAGCTGTGGTAAACAACAAAATTCCATATTTTAGTT
TGcggaataaaaaaaaatgtatttctcTAGTGGGAAAACTAAATATAATT
TTGCACTTTCTTTTCAGAGGACCATGGTGATGGCAATCCATTTGACGGCC
CCGGTGGTACGGTGGGCCATGCTGACGTCTCCAACCGAAACGTACATCTT
GACGAAGAGGAAAACTGGGGTGCAAAACCTGAAGATATTTTCTTGTGGTT
ACATCCTAGTAAAGGAACAGACTTCATTCAAGCTGCCATTCATGAAATCG
GTCATGTTCTTGGTTTATCGCACGATAAAGACTCCGACTCGGTGATGTTC
CCAACACTACAACAATTCCAACCACTATCATATTACAGCTTATCGACAAG
TGACATGAACAGAATTAAATCGTCGTTTGGTAAGTTCCATGAAATTTATC
ATTTATCATTGCGAAAAATAGGCCTTCTTCTCTATAACTCAAAATTGTGT
TGCCCGAAACTGTTGTACaatatttttgagttcttttgcCCTGGTTGACA
CAAATTGCAGAGACTTCACCAATGAATCGATACAAATAACATCTGTTTTC
CCTTGGTGACGCNGACGCCGACGGGACAACGCAAGAAACGCGATTTGGTT
TTACAGAAGGTCGATAAAAACAAGAAAGGCAGTGGTTTTGCATCATCGAA
AACTACCAGAAGATTTTACTGGAATATCAATCCAAAACCTAAATATGGTG
GTTTATTGAGACCAAATATATGGCTCAGTTTGGAATATGCATTCAACCGG
TGGGCTTCAGTCACTGACGCTGTATTCATTCGTGGCGATCGCTTAAACTG
GAGTGATATCTTGATCGGGTTCTGGACTAGTAAGATACTTTTTGTTGATA
TTTATATAATCTTGGTACCCTTGAATCTATACATACTTCTCTCATCATCG
ATAAACTTGAAAGACCCTCAGCTGAAAGCTGCACCTGAAGCTGTGGTAAA
CAACAAAATTCCATATTTTAGTTTGcggaataaaaaaaaatgtatttctc
TAGTGGGAAAACTAAATATAATTTTGCACTTTCTTTTCAGAGGACCATGG
TGATGGCAATCCATTTGACGGCCCCGGTGGTACGGTGGGCCATGCTGACG
TCTCCAACCGAAACGTACATCTTGACGAAGAGGAAAACTGGGGTGCAAAA
CCTGAAGATATTTTCTTGTGGTTACATCCTAGTAAAGGAACAGACTTCAT
TCAAGCTGCCATTCATGAAATCGGTCATGTTCTTGGTTTATCGCACGATA
AAGACTCCGACTCGGTGATGTTCCCAACACTACAACAATTCCAACCACTA
TCATATTACAGCTTATCGACAAGTGACATGAACAGAATTAAATCGTCGTT
TGGTAAGTTCCATGAAATTTATCATTTATCATTGCGAAAAATAGGCCTTC
TTCTCTATAACTCAAAATTGTGTTGCCCGAAACTGTTGTACaatattttt
gagttcttttgcCCTGGTTGACACAAATTGCAGAGACTTCACCAATGAAT
CGATACAAATAACATCTGTTTTCCCTTGGTGACGCGATTGTTTAAAGAAC
AAGACACTGTAGACATACAcgttctttttttatataagaacaaactgtat
aaggccaaaatgttaagaacaagttaagaacattttaaggctttgcagac
tctaaaacacccgatttcttagggaaatgggcaaaaatggtcacaaaaac
GTGTATACCGATATTATAAAGGTCATAAGCTAACTTAAGTCAGAAAAAAT
GTTACAAATCACTTTTCAAGGGATAGATTAATTTCCTGGATTTCAACAAA
CaaagattgtgtttgttttcacaaaaaagGATTAAGATATCCTGTGTTCA
TTTTGCGAAGTTTCTGATTACAAACATTGTCAAAGGGTTACTATTAGTGC
TGTGTGTATACTTCTTTAAACACATTCAACTGTTTGACCTAATTGAATAT
TATACTATCGCTCTACACATTGGGCGGAAAGTTTTTCCTAAGCCATTAGC
CTCTTGTCTCGGAGTCGCCTCATGTGACATACagggagaaaaaaaacaaa
acaaaaaaccacTAGTTATTCGATTCTGAGTAGAAAACACTGTTGGTGGG
TTTTTGTTTACAAGGGGGTTgtcgaaaggaaaaaaaaaacttgatcacaa
acaagaaaaagcttttttttcaattaccTCTATCGACACTTCAAAATTCA
AAGTACAGACTGACACCACAAAGCGCCACCATTTCGATAGGTGAGAGAAG
GGTCATCAGAGCTCGCATAGAAAAATCTTGCAATGTACACACTATGTACT
TGAGAGATCCTTAAAATCAGATCAAGTTACTGTTATAAAACTGAACTATT
CAAAGTCTGTCCCAAAACTATGTTATACGATCctaaattgaagaaaaata
ccCTTTTTTACCTAATTAGAGAGGCCTCATAAGCGGACGTTCAAGTcaaa
ttcacgcgttcacgcagtttttttgaaaatttttgtttatcaagcaagtg
aaaaagcccattcacggattcacgcaaaccgctcgGGCCCCATAAGATAA
CACACATATGAAACGACAAACGTGTAATAATACTCTCTTCAATGTTATAG
GACGATGTGAGCCAGATGTGATAGACGCTATGTTTGTTAACAAATTTCTT
GATGGAAAAACCTACATAATTAAAGGTCCCTTTATTTATCAAATGGATGA
AAGAAAACGGGAAGTTGTTCAGTCATGGCCACGTGCAACCACTCTCCCCT
TTTTGGCACCTACATTTGTTGACGAAGCTTTCTGGCATACTGATCATTTC
CTATACTTTTTTAATGTAAGTAGTGTTGTGTTAAacagtaagttggtcta
atatagATATCTCTCATGTAATTCCTATATACCCTTCTTAGACATAGGAT
TAAAAGGAATATCGGAATCACtaattgaaaaaatgtttcaacgATCGGCG
ATTCTGACCTTTTATTATTCCTCCCAGGTtcaaagaagggtgtcggaatt
agatgagggatatcgacattagaccaacctaCGGTAcagtgtgtccggaa
aaaagcGGAACAGATTCCTATATGGTAAAATCAAGTCGATGCACTGCACA
AGTTCGGAAAATGGATCTCACGTGGGTCCTTCAAAGTGCTGTCTTTTTCA
AATCTATGTTTTTGTATCCCTACCATGGACTGGCTGAAAAAGCCAGAGCA
CATCACGTAGCTCCTTTTACTTAACCCCTGGGTTTTATCTCTAAATTGAA
TCAAAATGGTAACTTTAAACGATAGATTCTTGCCATTATTCTTACCAGTT
ACCTAGCTCTGATGTATTGATTAAAGAATTCGAAATCCAATAAATCCATA
ACATCTATCATTTTTGTATTTACAGAAAGACGGTTATTACATTTACGATT
CAACCAACGATCCCACAGTAAACCGCAGTCCTCTGTTCAATCTGAACAAG
AACGGTTACGATGTAGGATTCCGTGGCCTAAAGCATCACAAATATATTGA
TGCAGCTATGGTGATGGATTACAAAGACGACATAACCGGCAAAACAAAAC
CTACTTCTTTCCTTTTTCAAGACGAATGGGTCTACAAATGGGACAAAGTC
GAAACTAATTGGCAACGTAGCATCATCCCTGCCGAAAAAGTAGCCGACGG
TTGGCCAAAATTAATTAGAAATGTATTCCCAGGGCTTCCAGGGCGTATTG
ATACTGCTTTTACATGGAGTTATGATGGTAGAACATATTTCTTTGTTGGT
AGATATTTTTATATTTGGGATCCGGTGAAAAATATTGCCGATGGACTTTA
CCCAACTTATCAATGGCAGAATGTATGTGAGATATATCTTTGCCAAGTGG
CGCCCACACCTAATGTCTACAATTGCGAGAGTTGGGACCTAACCATGGAT
AATTGTCACGGTTATTGTCATAATTAAATAAACGTTTTAGATTGTTAGAT
TGGGTTAGCGAACTGCCTAGTACAAAGCTAGGAATTACCAGATTTTAACT
GTGGCTAAACGTCCAGATTAATCAAATTATCGGCAGAACTAAAAATTTGT
AGATATATGTAAAGAATATTTTTCCctgtaaatttttatttgtacataac
tcttttttttttgaaagtttaaataTTGTTTCCCAAAACATTTTGTTCTT
GTTCCAAAATTTACCTTATTTATAATATGTGTTATAAGTATATCCTTATT
GTAGAACCCCTAGATCACACACTGCACTGAAATCAGTGATACTTAGCAAA
CTCGCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00015028-exon-sc0000203-1491911889:116553..116976 | TCONS_00015028-exon-sc0000203-1491911889:116553..116976 | Clytia hemisphaerica | exon |
TCONS_00015028-exon-sc0000203-1510915933:116553..116976 | TCONS_00015028-exon-sc0000203-1510915933:116553..116976 | Clytia hemisphaerica | exon |
TCONS_00015028-exon-sc0000203-1575043694:116553..116976 | TCONS_00015028-exon-sc0000203-1575043694:116553..116976 | Clytia hemisphaerica | exon |
TCONS_00015028-exon-sc0000203-1491911889:117492..118008 | TCONS_00015028-exon-sc0000203-1491911889:117492..118008 | Clytia hemisphaerica | exon |
TCONS_00015028-exon-sc0000203-1510915933:117492..118008 | TCONS_00015028-exon-sc0000203-1510915933:117492..118008 | Clytia hemisphaerica | exon |
TCONS_00015028-exon-sc0000203-1575043694:117492..118008 | TCONS_00015028-exon-sc0000203-1575043694:117492..118008 | Clytia hemisphaerica | exon |
TCONS_00015028-exon-sc0000203-1491911889:118220..118531 | TCONS_00015028-exon-sc0000203-1491911889:118220..118531 | Clytia hemisphaerica | exon |
TCONS_00015028-exon-sc0000203-1510915933:118220..118531 | TCONS_00015028-exon-sc0000203-1510915933:118220..118531 | Clytia hemisphaerica | exon |
TCONS_00015028-exon-sc0000203-1575043694:118220..118531 | TCONS_00015028-exon-sc0000203-1575043694:118220..118531 | Clytia hemisphaerica | exon |
TCONS_00015028-exon-sc0000203-1491911889:120753..120967 | TCONS_00015028-exon-sc0000203-1491911889:120753..120967 | Clytia hemisphaerica | exon |
TCONS_00015028-exon-sc0000203-1510915933:120753..120967 | TCONS_00015028-exon-sc0000203-1510915933:120753..120967 | Clytia hemisphaerica | exon |
TCONS_00015028-exon-sc0000203-1575043694:120753..120967 | TCONS_00015028-exon-sc0000203-1575043694:120753..120967 | Clytia hemisphaerica | exon |
TCONS_00015028-exon-sc0000203-1491911889:121528..122409 | TCONS_00015028-exon-sc0000203-1491911889:121528..122409 | Clytia hemisphaerica | exon |
TCONS_00015028-exon-sc0000203-1510915933:121528..122409 | TCONS_00015028-exon-sc0000203-1510915933:121528..122409 | Clytia hemisphaerica | exon |
TCONS_00015028-exon-sc0000203-1575043694:121528..122409 | TCONS_00015028-exon-sc0000203-1575043694:121528..122409 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000203 | supercontig | sc0000203:116553..122409 + |
Blast
BLAST of TCONS_00015028 vs. Swiss-Prot (Human)
Match: MMP12 (Macrophage metalloelastase OS=Homo sapiens GN=MMP12 PE=1 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 8.310e-28 Identity = 127/501 (25.35%), Postives = 211/501 (42.12%), Query Frame = 2
Query: 446 YMDEKRAYKINKTPFNAADKLSYKRSELEAGLREYQDFMTLPTTGRLDKRTMEALHKKRCGMPDKVRRDDTTFKMSLTPTGQRKKRDLVLQKVDKNKKGSGFASSKTTRRFYWNINPKPKYGGLLRPNIWLSLEYAFNRWASVTDAVFIRGDRLNWSDILIGFWTKDHGDGNPFDGPGGTVGHADVSNRNV----HLDEEENWGAKPEDIFLWLHPSKGTDFIQAAIHEIGHVLGLSHDKDSDSVMFPTLQQFQPLSYYSLSTSDMNRIKSSFG-----------------RCEPDV-IDAMFVNKFLDGKTYIIKGPFIY-QMDERKREVVQ----SWPRATTLPFLAPTFVDEAF-WHTDHFLYFFNKDGYYIYDSTNDPTVNRSPLFNLNKNGYDVGFRGLKHHKYIDAAMVMDYKDDITGKTKPTSFLFQDEWVYKWDKVETNWQRSIIPAEKVADGWPKLIRNVFPGLPGRIDTAFTWSYDGRTYFFVGRYFYIWD 1864
Y+++ +INK P K+ Y + ++ ++E Q F+ L TG+LD T+E +H RCG+PD P G ++ + +++ N P + R ++ ++ AF W++VT F + + +DIL+ F HGD + FDG GG + HA + H DE+E W S GT+ A+HEIGH LGL H D +VMFPT ++ ++ + LS D+ I+S +G C+P++ DA+ + K + K F + ++ ER + V WP TL P+ ++ A+ + ++ F D Y++ N P N K+ + GF K IDAA + ++ F D +++D+ + + G+PKLI F G+ +ID F +S + YFF G + +D
Sbjct: 36 YLEKFYGLEINKLP---VTKMKYSGNLMKEKIQEMQHFLGLKVTGQLDTSTLEMMHAPRCGVPD-------VHHFREMPGGPVWRKHYITYRIN-------------------NYTPD-----MNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMADILVVFARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDE----------FWTTHSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTY-KYVDINTFRLSADDIRGIQSLYGDPKENQRLPNPDNSEPALCDPNLSFDAVTT---VGNKIFFFKDRFFWLKVSERPKTSVNLISSLWP---TL----PSGIEAAYEIEARNQVFLFKDDKYWLIS-------NLRPEPNYPKSIHSFGFPNFV--KKIDAA--------VFNPRFYRTYFFVDNQYWRYDERR----------QMMDPGYPKLITKNFQGIGPKIDAVF-YSKNKYYYFFQGSNQFEYD 452
The following BLAST results are available for this feature:
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