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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015030 ID=TCONS_00015030|Name=TCONS_00015030|organism=Clytia hemisphaerica|type=transcript|length=1672bp
GCCGACGGGACAACGCAAGAAACGCGATTTGGTTTTACAGAAGGTCGATA
AAAACAAGAAAGGCAGTGGTTTTGCATCATCGAAAACTACCAGAAGATTT
TACTGGAATATCAATCCAAAACCTAAATATGGTGGTTTATTGAGACCAAA
TATATGGCTCAGTTTGGAATATGCATTCAACCGGTGGGCTTCAGTCACTG
ACGCTGTATTCATTCGTGGCGATCGCTTAAACTGGAGTGATATCTTGATC
GGGTTCTGGACTAAGGACCATGGTGATGGCAATCCATTTGACGGCCCCGG
TGGTACGGTGGGCCATGCTGACGTCTCCAACCGAAACGTACATCTTGACG
AAGAGGAAAACTGGGGTGCAAAACCTGAAGATATTTTCTTGTGGTTACAT
CCTAGTAAAGGAACAGACTTCATTCAAGCTGCCATTCATGAAATCGGTCA
TGTTCTTGGTTTATCGCACGATAAAGACTCCGACTCGGTGATGTTCCCAA
CACTACAACAATTCCAACCACTATCATATTACAGCTTATCGACAAGTGAC
ATGAACAGAATTAAATCGTCGTTTGGACGATGTGAGCCAGATGTGATAGA
CGCTATGTTTGTTAACAAATTTCTTGATGGAAAAACCTACATAATTAAAG
GTCCCTTTATTTATCAAATGGATGAAAGAAAACGGGAAGTTGTTCAGTCA
TGGCCACGTGCAACCACTCTCCCCTTTTTGGCACCTACATTTGTTGACGA
AGCTTTCTGGCATACTGATCATTTCCTATACTTTTTTAATAAAGACGGTT
ATTACATTTACGATTCAACCAACGATCCCACAGTAAACCGCAGTCCTCTG
TTCAATCTGAACAAGAACGGTTACGATGTAGGATTCCGTGGCCTAAAGCA
TCACAAATATATTGATGCAGCTATGGTGATGGATTACAAAGACGACATAA
CCGGCAAAACAAAACCTACTTCTTTCCTTTTTCAAGACGAATGGGTCTAC
AAATGGGACAAAGTCGAAACTAATTGGCAACGTAGCATCATCCCTGCCGA
AAAAGTAGCCGACGGTTGGCCAAAATTAATTAGAAATGTATTCCCAGGGC
TTCCAGGGCGTATTGATACTGCTTTTACATGGAGTTATGATGGTAGAACA
TATTTCTTTGTTGGTAGATATTTTTATATTTGGGATCCGGTGAAAAATAT
TGCCGATGGACTTTACCCAACTTATCAATGGCAGAATGTATGTGAGATAT
ATCTTTGCCAAGTGGCGCCCACACCTAATGTCTACAATTGCGAGAGTTGG
GACCTAACCATGGATAATTGTCACGGTTATTGTCATAATTAAATAAACGT
TTTAGATTGTTAGATTGGGTTAGCGAACTGCCTAGTACAAAGCTAGGAAT
TACCAGATTTTAACTGTGGCTAAACGTCCAGATTAATCAAATTATCGGCA
GAACTAAAAATTTGTAGATATATGTAAAGAATATTTTTCCctgtaaattt
ttatttgtacataactcttttttttttgaaagtttaaataTTGTTTCCCA
AAACATTTTGTTCTTGTTCCAAAATTTACCTTATTTATAATATGTGTTAT
AAGTATATCCTTATTGTAGAACCCCTAGATCACACACTGCACTGAAATCA
GTGATACTTAGCAAACTCGCCA Run BLAST on NCBI transcript from alignment at sc0000203:118719..122409+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015030 ID=TCONS_00015030|Name=TCONS_00015030|organism=Clytia hemisphaerica|type=transcript|length=3691bp|location=Sequence derived from alignment at sc0000203:118719..122409+ (Clytia hemisphaerica)
GCCGACGGGACAACGCAAGAAACGCGATTTGGTTTTACAGAAGGTCGATA
AAAACAAGAAAGGCAGTGGTTTTGCATCATCGAAAACTACCAGAAGATTT
TACTGGAATATCAATCCAAAACCTAAATATGGTGGTTTATTGAGACCAAA
TATATGGCTCAGTTTGGAATATGCATTCAACCGGTGGGCTTCAGTCACTG
ACGCTGTATTCATTCGTGGCGATCGCTTAAACTGGAGTGATATCTTGATC
GGGTTCTGGACTAGTAAGATACTTTTTGTTGATATTTATATAATCTTGGT
ACCCTTGAATCTATACATACTTCTCTCATCATCGATAAACTTGAAAGACC
CTCAGCTGAAAGCTGCACCTGAAGCTGTGGTAAACAACAAAATTCCATAT
TTTAGTTTGcggaataaaaaaaaatgtatttctcTAGTGGGAAAACTAAA
TATAATTTTGCACTTTCTTTTCAGAGGACCATGGTGATGGCAATCCATTT
GACGGCCCCGGTGGTACGGTGGGCCATGCTGACGTCTCCAACCGAAACGT
ACATCTTGACGAAGAGGAAAACTGGGGTGCAAAACCTGAAGATATTTTCT
TGTGGTTACATCCTAGTAAAGGAACAGACTTCATTCAAGCTGCCATTCAT
GAAATCGGTCATGTTCTTGGTTTATCGCACGATAAAGACTCCGACTCGGT
GATGTTCCCAACACTACAACAATTCCAACCACTATCATATTACAGCTTAT
CGACAAGTGACATGAACAGAATTAAATCGTCGTTTGGTAAGTTCCATGAA
ATTTATCATTTATCATTGCGAAAAATAGGCCTTCTTCTCTATAACTCAAA
ATTGTGTTGCCCGAAACTGTTGTACaatatttttgagttcttttgcCCTG
GTTGACACAAATTGCAGAGACTTCACCAATGAATCGATACAAATAACATC
TGTTTTCCCTTGGTGACGCGATTGTTTAAAGAACAAGACACTGTAGACAT
ACAcgttctttttttatataagaacaaactgtataaggccaaaatgttaa
gaacaagttaagaacattttaaggctttgcagactctaaaacacccgatt
tcttagggaaatgggcaaaaatggtcacaaaaacGTGTATACCGATATTA
TAAAGGTCATAAGCTAACTTAAGTCAGAAAAAATGTTACAAATCACTTTT
CAAGGGATAGATTAATTTCCTGGATTTCAACAAACaaagattgtgtttgt
tttcacaaaaaagGATTAAGATATCCTGTGTTCATTTTGCGAAGTTTCTG
ATTACAAACATTGTCAAAGGGTTACTATTAGTGCTGTGTGTATACTTCTT
TAAACACATTCAACTGTTTGACCTAATTGAATATTATACTATCGCTCTAC
ACATTGGGCGGAAAGTTTTTCCTAAGCCATTAGCCTCTTGTCTCGGAGTC
GCCTCATGTGACATACagggagaaaaaaaacaaaacaaaaaaccacTAGT
TATTCGATTCTGAGTAGAAAACACTGTTGGTGGGTTTTTGTTTACAAGGG
GGTTgtcgaaaggaaaaaaaaaacttgatcacaaacaagaaaaagctttt
ttttcaattaccTCTATCGACACTTCAAAATTCAAAGTACAGACTGACAC
CACAAAGCGCCACCATTTCGATAGGTGAGAGAAGGGTCATCAGAGCTCGC
ATAGAAAAATCTTGCAATGTACACACTATGTACTTGAGAGATCCTTAAAA
TCAGATCAAGTTACTGTTATAAAACTGAACTATTCAAAGTCTGTCCCAAA
ACTATGTTATACGATCctaaattgaagaaaaataccCTTTTTTACCTAAT
TAGAGAGGCCTCATAAGCGGACGTTCAAGTcaaattcacgcgttcacgca
gtttttttgaaaatttttgtttatcaagcaagtgaaaaagcccattcacg
gattcacgcaaaccgctcgGGCCCCATAAGATAACACACATATGAAACGA
CAAACGTGTAATAATACTCTCTTCAATGTTATAGGACGATGTGAGCCAGA
TGTGATAGACGCTATGTTTGTTAACAAATTTCTTGATGGAAAAACCTACA
TAATTAAAGGTCCCTTTATTTATCAAATGGATGAAAGAAAACGGGAAGTT
GTTCAGTCATGGCCACGTGCAACCACTCTCCCCTTTTTGGCACCTACATT
TGTTGACGAAGCTTTCTGGCATACTGATCATTTCCTATACTTTTTTAATG
TAAGTAGTGTTGTGTTAAacagtaagttggtctaatatagATATCTCTCA
TGTAATTCCTATATACCCTTCTTAGACATAGGATTAAAAGGAATATCGGA
ATCACtaattgaaaaaatgtttcaacgATCGGCGATTCTGACCTTTTATT
ATTCCTCCCAGGTtcaaagaagggtgtcggaattagatgagggatatcga
cattagaccaacctaCGGTAcagtgtgtccggaaaaaagcGGAACAGATT
CCTATATGGTAAAATCAAGTCGATGCACTGCACAAGTTCGGAAAATGGAT
CTCACGTGGGTCCTTCAAAGTGCTGTCTTTTTCAAATCTATGTTTTTGTA
TCCCTACCATGGACTGGCTGAAAAAGCCAGAGCACATCACGTAGCTCCTT
TTACTTAACCCCTGGGTTTTATCTCTAAATTGAATCAAAATGGTAACTTT
AAACGATAGATTCTTGCCATTATTCTTACCAGTTACCTAGCTCTGATGTA
TTGATTAAAGAATTCGAAATCCAATAAATCCATAACATCTATCATTTTTG
TATTTACAGAAAGACGGTTATTACATTTACGATTCAACCAACGATCCCAC
AGTAAACCGCAGTCCTCTGTTCAATCTGAACAAGAACGGTTACGATGTAG
GATTCCGTGGCCTAAAGCATCACAAATATATTGATGCAGCTATGGTGATG
GATTACAAAGACGACATAACCGGCAAAACAAAACCTACTTCTTTCCTTTT
TCAAGACGAATGGGTCTACAAATGGGACAAAGTCGAAACTAATTGGCAAC
GTAGCATCATCCCTGCCGAAAAAGTAGCCGACGGTTGGCCAAAATTAATT
AGAAATGTATTCCCAGGGCTTCCAGGGCGTATTGATACTGCTTTTACATG
GAGTTATGATGGTAGAACATATTTCTTTGTTGGTAGATATTTTTATATTT
GGGATCCGGTGAAAAATATTGCCGATGGACTTTACCCAACTTATCAATGG
CAGAATGTATGTGAGATATATCTTTGCCAAGTGGCGCCCACACCTAATGT
CTACAATTGCGAGAGTTGGGACCTAACCATGGATAATTGTCACGGTTATT
GTCATAATTAAATAAACGTTTTAGATTGTTAGATTGGGTTAGCGAACTGC
CTAGTACAAAGCTAGGAATTACCAGATTTTAACTGTGGCTAAACGTCCAG
ATTAATCAAATTATCGGCAGAACTAAAAATTTGTAGATATATGTAAAGAA
TATTTTTCCctgtaaatttttatttgtacataactcttttttttttgaaa
gtttaaataTTGTTTCCCAAAACATTTTGTTCTTGTTCCAAAATTTACCT
TATTTATAATATGTGTTATAAGTATATCCTTATTGTAGAACCCCTAGATC
ACACACTGCACTGAAATCAGTGATACTTAGCAAACTCGCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015030-exon-sc0000203-1491911889:118719..118981 | TCONS_00015030-exon-sc0000203-1491911889:118719..118981 | Clytia hemisphaerica | exon |
| TCONS_00015030-exon-sc0000203-1510915933:118719..118981 | TCONS_00015030-exon-sc0000203-1510915933:118719..118981 | Clytia hemisphaerica | exon |
| TCONS_00015030-exon-sc0000203-1575043694:118719..118981 | TCONS_00015030-exon-sc0000203-1575043694:118719..118981 | Clytia hemisphaerica | exon |
| TCONS_00015030-exon-sc0000203-1491911889:119193..119504 | TCONS_00015030-exon-sc0000203-1491911889:119193..119504 | Clytia hemisphaerica | exon |
| TCONS_00015030-exon-sc0000203-1510915933:119193..119504 | TCONS_00015030-exon-sc0000203-1510915933:119193..119504 | Clytia hemisphaerica | exon |
| TCONS_00015030-exon-sc0000203-1575043694:119193..119504 | TCONS_00015030-exon-sc0000203-1575043694:119193..119504 | Clytia hemisphaerica | exon |
| TCONS_00015030-exon-sc0000203-1491911889:120753..120967 | TCONS_00015030-exon-sc0000203-1491911889:120753..120967 | Clytia hemisphaerica | exon |
| TCONS_00015030-exon-sc0000203-1510915933:120753..120967 | TCONS_00015030-exon-sc0000203-1510915933:120753..120967 | Clytia hemisphaerica | exon |
| TCONS_00015030-exon-sc0000203-1575043694:120753..120967 | TCONS_00015030-exon-sc0000203-1575043694:120753..120967 | Clytia hemisphaerica | exon |
| TCONS_00015030-exon-sc0000203-1491911889:121528..122409 | TCONS_00015030-exon-sc0000203-1491911889:121528..122409 | Clytia hemisphaerica | exon |
| TCONS_00015030-exon-sc0000203-1510915933:121528..122409 | TCONS_00015030-exon-sc0000203-1510915933:121528..122409 | Clytia hemisphaerica | exon |
| TCONS_00015030-exon-sc0000203-1575043694:121528..122409 | TCONS_00015030-exon-sc0000203-1575043694:121528..122409 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000203 | supercontig | sc0000203:118719..122409 + |
Blast
BLAST of TCONS_00015030 vs. Swiss-Prot (Human)
Match: MMP1 (Interstitial collagenase OS=Homo sapiens GN=MMP1 PE=1 SV=3) HSP 1 Score: 97.8265 bits (242), Expect = 1.406e-21 Identity = 105/371 (28.30%), Postives = 165/371 (44.47%), Query Frame = 2
Query: 137 LLRPNIWLSLEYAFNRWASVTDAVFIRGDRLNWSDILIGFWTKDHGDGNPFDGPGGTVGHADVSNRNV----HLDEEENWGAKPEDIFLWLHPSKGTDFIQAAIHEIGHVLGLSHDKDSDSVMFPTLQQFQPLSYYSLSTSDMNRIKSSFGRCE-------PDVIDAMFVNKFLDGKTYIIKGPFIYQMDERKREVVQSWPRATTLPFLA------PTFVDEAFWHTDH-FLYFFNKDGYYIYDSTNDPTVNRSPLFNLNKNGY-DVGF-RGLKHHKYIDAAMVMDYKDDITGKTKPTSFLFQDEWVYKWDKVETNWQRSIIPAEKVADGWPKLIRNVFPGLPGRIDTAFTWSYDGRTYFFVGRYFYIWDP 1189
L R ++ ++E AF W++VT F + +DI+I F DH D +PFDGPGG + HA + H DE+E W + L + A HE+GH LGLSH D ++M+P+ + L+ D++ I++ +GR + P A D T I+G ++ D +P L F++ P ++ A+ D + FF + Y+ N L K+ Y GF R +KH IDAA+ ++ TGKT + F +++D+ ++RS+ P G+PK+I + FPG+ ++D F DG YFF G Y +DP
Sbjct: 125 LPRADVDHAIEKAFQLWSNVTPLTFTKVSE-GQADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNFREYNLH----------RVAAHELGHSLGLSHSTDIGALMYPS---YTFSGDVQLAQDDIDGIQAIYGRSQNPVQPIGPQTPKACDSKLTFDAIT-TIRGEVMFFKDRFYMRTNPFYPE-VELNFISVFWPQLPNGLEAAYEFADRDEVRFFKGNKYWAVQGQN-------VLHGYPKDIYSSFGFPRTVKH---IDAAL----SEENTGKT----YFFVANKYWRYDE----YKRSMDP------GYPKMIAHDFPGIGHKVDAVFM--KDGFFYFFHGTRQYKFDP 449
The following BLAST results are available for this feature:
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