TCONS_00015065 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015065
Unique NameTCONS_00015065
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2146

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015065 ID=TCONS_00015065|Name=TCONS_00015065|organism=Clytia hemisphaerica|type=transcript|length=2146bp
TTTCGTTACTAACTTTTTCTGTCAATAAGAGGATTGGAATTTATCAATAG
CtttattgttgtttttaagATTATTATCAGCTTTACGTTTCTGCACCAAT
CATATGAGTTACCAATTGTTTCACgcctcgaccaatcaaatcaattttat
tgttaATAGACCAATCAGCGCCTTCGTAATTGTTCAGTCGGCTTCCTTTC
ATCTTGAATGTTAATATCTTTCCCGCCTCAAATATTCTTTCCTTTACCGC
CTTAGTCCAGCccatttttatgaaaacaaTAATATACTGATTATTATGCG
CCATTTCGCAGTCAGAGGCGGGCCCAACTACATCGCTTCAAAGGGACCGA
CACTCTTTATGATAAGATGTCGGTACTGTTTGATGTCTGAGCGAATTGTT
TCGGCCTTCTTTGAAGTGGGGATAACGTTAGAAAATGATGTGATGAACCA
GCTGACTAAAGAAGTAGCGTAGGAGAGGAGGAGAAGTTCAGTTTTAACTT
GTCTCTTGAACAGTAAACATCTCTCAAGACTTTTACTACTACGAAACTTt
atcataaatatttttttcacatACAAGTACGAATTGATTATACAAGAGAA
GACTATGTCTCCACCAAGCAGATCATCAACTGTAGCTACAAGTTTCTTAC
TTCCACCACATCAATtatttGAACACAACAAACATTCACCACTTGCTATG
CTCGCTGCTACATGCAAGAAAATTGGAAGACCAAACAGCCCACCAGATAC
TGAATATCAACCACCAGccaagaaactttttcaacctTGGAATCACACTA
GCCAAGCTCCTCTGTCACCTACATCTAAAGTACGCAGCTATCTTGAATCA
ACAAATTTTAGCATGCCCCCAAGTCCGCCACTCAAACCAGACTTGGTAAA
ACCAGCTTTCGGCACCAGTGAAACTACAGCTTTTACAAGCCATGCTCCAA
CCACACTCCGTGTTCCATCACCACCATGCTCAGCCTGTGCTGCCAGTCAA
CGCTGCCCTCAACCGCTTCCAAAAAGAATGTCACCAATTCCAACTTTGAC
TCCGCCAAGCTCCCCACCAAGCACTATCCGCCCATCATTGTGGACATTAC
CCTCACCATACTCAGTCCGCACCCTTGAAAACTCATCAACAGTAGCACCA
AGCACAATTACATCACCAACTATTGTCCGCCCATCTCCATACCCAATCAC
ATCAAGTGCAGGCAACCCACCACCAACCACAGCCGTGGCACCACAAGTCC
CAACCAGTGTCACACGTCGCTGTCGTCGCTGCAAATGCCCTAACTGTCTT
TCAGGGCAACCATCAGAACCAAACAAGCCAAAACAACATCTTTGTCACAT
CCCTGGATGTGGAAAAGTTTATGGCAAAACCAGTCACTTGAAGGCTCATC
TCAGATGGCATGCTGGACTCAGACCATTTGTCTGCAACTGGCTTTTCTGT
AACAAATCTTTTACTCGATCTGATGAACTTCAGCGACACTTACGTACACA
CACTGGTGAAAAGAGATTCGCATGTCAAGAGTGTGGTAAAAGGTTTACAC
GCTCTGATCATCTCTCCAAACACATGAAAACCCACCAAAATAAAGCAGCT
AAGGACAAaacacaacaacaaaaacaacaatctCAACAACAATCTCGACC
AGTTGTCCAAGAAACCCCAACAGACATTGAAATTGATGAGGATATCAATG
TTGAGAACTAAGAACTTTCATTAAAGTCAAAACTACTACTAAGAAAAAAT
GAgaacttttagattttatttttcataatgctaagaatttttttatactG
TATATAATAAGGATATTGAAAACTTCTGAAAACGTGGTTGAAGGATAAAC
TTGTAGATAGATATTATAGAGATACAAAATTTAGATAACTTTTAATATTT
CACCGCTTGTATATTATGTTTATATTACATTAAACtctacaacgttttgt
aaataCTTTTACCCCAAAAGGATTATTATAATactaaaaacaacaaataa
caagaaaatatcagaaaattcaTAATAAATAACATctgttgtgttttttt
tgttctgtgatttttttggcatctcaattttttctgtgtttttgtcAATG
CTAAAATGTTGATAGATATGTACTTTTTGTCCCGCCTTATTGTTAG
Run BLAST on NCBI

protein sequence of Zn-finger transcription factor

>TCONS_00015065-protein ID=TCONS_00015065-protein|Name=Zn-finger transcription factor|organism=Clytia hemisphaerica|type=polypeptide|length=368bp
MSPPSRSSTVATSFLLPPHQLFEHNKHSPLAMLAATCKKIGRPNSPPDTE
YQPPAKKLFQPWNHTSQAPLSPTSKVRSYLESTNFSMPPSPPLKPDLVKP
AFGTSETTAFTSHAPTTLRVPSPPCSACAASQRCPQPLPKRMSPIPTLTP
PSSPPSTIRPSLWTLPSPYSVRTLENSSTVAPSTITSPTIVRPSPYPITS
SAGNPPPTTAVAPQVPTSVTRRCRRCKCPNCLSGQPSEPNKPKQHLCHIP
GCGKVYGKTSHLKAHLRWHAGLRPFVCNWLFCNKSFTRSDELQRHLRTHT
GEKRFACQECGKRFTRSDHLSKHMKTHQNKAAKDKTQQQKQQSQQQSRPV
VQETPTDIEIDEDINVEN
Run BLAST on NCBI

transcript from alignment at sc0000203:343714..346155-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015065 ID=TCONS_00015065|Name=TCONS_00015065|organism=Clytia hemisphaerica|type=transcript|length=2442bp|location=Sequence derived from alignment at sc0000203:343714..346155- (Clytia hemisphaerica)
TTTCGTTACTAACTTTTTCTGTCAATAAGAGGATTGGAATTTATCAATAG
CTTTATTGTTGTTTTTAAGATTATTATCAGCTTTACGTTTCTGCACCAAT
CATATGAGTTACCAATTGTTTCACGCCTCGACCAATCAAATCAATTTTAT
TGTTAATAGACCAATCAGCGCCTTCGTAATTGTTCAGTCGGCTTCCTTTC
ATCTTGAATGTTAATATCTTTCCCGCCTCAAATATTCTTTCCTTTACCGC
CTTAGTCCAGCCCATTTTTATGAAAACAATAATATACTGATTATTATGCG
CCATTTCGCAGTCAGAGGCGGGCCCAACTACATCGCTTCAAAGGGACCGA
CACTCTTTATGATAAGATGTCGGTACTGTTTGATGTCTGAGCGAATTGTT
TCGGCCTTCTTTGAAGTGGGGATAACGTTAGAAAATGATGTGATGAACCA
GCTGACTAAAGAAGTAGCGTAGGAGAGGAGGAGAAGTTCAGTTTTAACTT
GTCTCTTGAACAGTAAACATCTCTCAAGACTTTTACTACTACGAAACTTT
ATCATAAATATTTTTTTCACATACAAGTACGAATTGATTATACAAGAGAA
GACTATGTCTCCACCAAGCAGATCATCAACTGTAGCTACAAGTTTCTTAC
TTCCACCACATCAATTATTTGTAAGTATTTTTTGTTGTTGTGATTTTTTT
TTCTTACTTGCCTGATACTACTCAAACTTTTTTCCAAACTTTGTTTTTTA
TCTTTTTCGATTTGCCGTATGATTTTTCGATTTTCGAAATCTTTTTTTCT
CTTTCTTGTATGTTTTTGCATGAGTTGTTTGTACGTTGTTGAAATGAAAT
CAGGTTGAGGTAAAGAGAGATTTCTTCGACTGTTTTCTAGTTTTATTCAT
ATGAAAATATAAAGATGCTTTTTTTGAACGTTATGACTAAATTTTGTTCT
TATTTCATTTTTGTAGGAACACAACAAACATTCACCACTTGCTATGCTCG
CTGCTACATGCAAGAAAATTGGAAGACCAAACAGCCCACCAGATACTGAA
TATCAACCACCAGCCAAGAAACTTTTTCAACCTTGGAATCACACTAGCCA
AGCTCCTCTGTCACCTACATCTAAAGTACGCAGCTATCTTGAATCAACAA
ATTTTAGCATGCCCCCAAGTCCGCCACTCAAACCAGACTTGGTAAAACCA
GCTTTCGGCACCAGTGAAACTACAGCTTTTACAAGCCATGCTCCAACCAC
ACTCCGTGTTCCATCACCACCATGCTCAGCCTGTGCTGCCAGTCAACGCT
GCCCTCAACCGCTTCCAAAAAGAATGTCACCAATTCCAACTTTGACTCCG
CCAAGCTCCCCACCAAGCACTATCCGCCCATCATTGTGGACATTACCCTC
ACCATACTCAGTCCGCACCCTTGAAAACTCATCAACAGTAGCACCAAGCA
CAATTACATCACCAACTATTGTCCGCCCATCTCCATACCCAATCACATCA
AGTGCAGGCAACCCACCACCAACCACAGCCGTGGCACCACAAGTCCCAAC
CAGTGTCACACGTCGCTGTCGTCGCTGCAAATGCCCTAACTGTCTTTCAG
GGCAACCATCAGAACCAAACAAGCCAAAACAACATCTTTGTCACATCCCT
GGATGTGGAAAAGTTTATGGCAAAACCAGTCACTTGAAGGCTCATCTCAG
ATGGCATGCTGGACTCAGACCATTTGTCTGCAACTGGCTTTTCTGTAACA
AATCTTTTACTCGATCTGATGAACTTCAGCGACACTTACGTACACACACT
GGTGAAAAGAGATTCGCATGTCAAGAGTGTGGTAAAAGGTTTACACGCTC
TGATCATCTCTCCAAACACATGAAAACCCACCAAAATAAAGCAGCTAAGG
ACAAAACACAACAACAAAAACAACAATCTCAACAACAATCTCGACCAGTT
GTCCAAGAAACCCCAACAGACATTGAAATTGATGAGGATATCAATGTTGA
GAACTAAGAACTTTCATTAAAGTCAAAACTACTACTAAGAAAAAATGAGA
ACTTTTAGATTTTATTTTTCATAATGCTAAGAATTTTTTTATACTGTATA
TAATAAGGATATTGAAAACTTCTGAAAACGTGGTTGAAGGATAAACTTGT
AGATAGATATTATAGAGATACAAAATTTAGATAACTTTTAATATTTCACC
GCTTGTATATTATGTTTATATTACATTAAACTCTACAACGTTTTGTAAAT
ACTTTTACCCCAAAAGGATTATTATAATACTAAAAACAACAAATAACAAG
AAAATATCAGAAAATTCATAATAAATAACATCTGTTGTGTTTTTTTTGTT
CTGTGATTTTTTTGGCATCTCAATTTTTTCTGTGTTTTTGTCAATGCTAA
AATGTTGATAGATATGTACTTTTTGTCCCGCCTTATTGTTAG

Coding sequence (CDS) from alignment at sc0000203:343714..346155-

>TCONS_00015065 ID=TCONS_00015065|Name=TCONS_00015065|organism=Clytia hemisphaerica|type=CDS|length=2214bp|location=Sequence derived from alignment at sc0000203:343714..346155- (Clytia hemisphaerica)
GAACACAACAAACATTCACCACTTGCTATGCTCGCTGCTACATGCAAGAA
AATTGGAAGACCAAACAGCCCACCAGATACTGAATATCAACCACCAGCCA
AGAAACTTTTTCAACCTTGGAATCACACTAGCCAAGCTCCTCTGTCACCT
ACATCTAAAGTACGCAGCTATCTTGAATCAACAAATTTTAGCATGCCCCC
AAGTCCGCCACTCAAACCAGACTTGGTAAAACCAGCTTTCGGCACCAGTG
AAACTACAGCTTTTACAAGCCATGCTCCAACCACACTCCGTGTTCCATCA
CCACCATGCTCAGCCTGTGCTGCCAGTCAACGCTGCCCTCAACCGCTTCC
AAAAAGAATGTCACCAATTCCAACTTTGACTCCGCCAAGCTCCCCACCAA
GCACTATCCGCCCATCATTGTGGACATTACCCTCACCATACTCAGTCCGC
ACCCTTGAAAACTCATCAACAGTAGCACCAAGCACAATTACATCACCAAC
TATTGTCCGCCCATCTCCATACCCAATCACATCAAGTGCAGGCAACCCAC
CACCAACCACAGCCGTGGCACCACAAGTCCCAACCAGTGTCACACGTCGC
TGTCGTCGCTGCAAATGCCCTAACTGTCTTTCAGGGCAACCATCAGAACC
AAACAAGCCAAAACAACATCTTTGTCACATCCCTGGATGTGGAAAAGTTT
ATGGCAAAACCAGTCACTTGAAGGCTCATCTCAGATGGCATGCTGGACTC
AGACCATTTGTCTGCAACTGGCTTTTCTGTAACAAATCTTTTACTCGATC
TGATGAACTTCAGCGACACTTACGTACACACACTGGTGAAAAGAGATTCG
CATGTCAAGAGTGTGGTAAAAGGTTTACACGCTCTGATCATCTCTCCAAA
CACATGAAAACCCACCAAAATAAAGCAGCTAAGGACAAAACACAACAACA
AAAACAACAATCTCAACAACAATCTCGACCAGTTGTCCAAGAAACCCCAA
CAGACATTGAAATTGATGAGGATATCAATGTTGAGAACTAAATGTCTCCA
CCAAGCAGATCATCAACTGTAGCTACAAGTTTCTTACTTCCACCACATCA
ATTATTTGAACACAACAAACATTCACCACTTGCTATGCTCGCTGCTACAT
GCAAGAAAATTGGAAGACCAAACAGCCCACCAGATACTGAATATCAACCA
CCAGCCAAGAAACTTTTTCAACCTTGGAATCACACTAGCCAAGCTCCTCT
GTCACCTACATCTAAAGTACGCAGCTATCTTGAATCAACAAATTTTAGCA
TGCCCCCAAGTCCGCCACTCAAACCAGACTTGGTAAAACCAGCTTTCGGC
ACCAGTGAAACTACAGCTTTTACAAGCCATGCTCCAACCACACTCCGTGT
TCCATCACCACCATGCTCAGCCTGTGCTGCCAGTCAACGCTGCCCTCAAC
CGCTTCCAAAAAGAATGTCACCAATTCCAACTTTGACTCCGCCAAGCTCC
CCACCAAGCACTATCCGCCCATCATTGTGGACATTACCCTCACCATACTC
AGTCCGCACCCTTGAAAACTCATCAACAGTAGCACCAAGCACAATTACAT
CACCAACTATTGTCCGCCCATCTCCATACCCAATCACATCAAGTGCAGGC
AACCCACCACCAACCACAGCCGTGGCACCACAAGTCCCAACCAGTGTCAC
ACGTCGCTGTCGTCGCTGCAAATGCCCTAACTGTCTTTCAGGGCAACCAT
CAGAACCAAACAAGCCAAAACAACATCTTTGTCACATCCCTGGATGTGGA
AAAGTTTATGGCAAAACCAGTCACTTGAAGGCTCATCTCAGATGGCATGC
TGGACTCAGACCATTTGTCTGCAACTGGCTTTTCTGTAACAAATCTTTTA
CTCGATCTGATGAACTTCAGCGACACTTACGTACACACACTGGTGAAAAG
AGATTCGCATGTCAAGAGTGTGGTAAAAGGTTTACACGCTCTGATCATCT
CTCCAAACACATGAAAACCCACCAAAATAAAGCAGCTAAGGACAAAACAC
AACAACAAAAACAACAATCTCAACAACAATCTCGACCAGTTGTCCAAGAA
ACCCCAACAGACATTGAAATTGATGAGGATATCAATGTTGAGAACTAAAT
GTCTCCACCAAGCAGATCATCAACTGTAGCTACAAGTTTCTTACTTCCAC
CACATCAATTATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008429XLOC_008429Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
Zn-finger transcription factorTCONS_00015065-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015065-exon-sc0000203-1575043694:345486..346155TCONS_00015065-exon-sc0000203-1575043694:345486..346155Clytia hemisphaericaexon
TCONS_00015065-exon-sc0000203-1575043694:343714..345189TCONS_00015065-exon-sc0000203-1575043694:343714..345189Clytia hemisphaericaexon
TCONS_00015065-exon-sc0000203-1510915933:345486..346155TCONS_00015065-exon-sc0000203-1510915933:345486..346155Clytia hemisphaericaexon
TCONS_00015065-exon-sc0000203-1510915933:343714..345189TCONS_00015065-exon-sc0000203-1510915933:343714..345189Clytia hemisphaericaexon
TCONS_00015065-exon-sc0000203-1491911889:345486..346155TCONS_00015065-exon-sc0000203-1491911889:345486..346155Clytia hemisphaericaexon
TCONS_00015065-exon-sc0000203-1491911889:343714..345189TCONS_00015065-exon-sc0000203-1491911889:343714..345189Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000203supercontigsc0000203:343714..346155 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.43958	0.321495	0.414762	0.486936	161.216	116.543	197.873	213.883	26.223	47.4126	51.8836	13.4547	42.6832	28.0206	12.2724	35.3808	51.3548	58.8379	38.142	55.4379	39.4374	31.9509	25.1587	30.529	31.3458	35.5747	62.4098	75.7989	40.2923	35.6042
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
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BLAST of TCONS_00015065 vs. Swiss-Prot (Human)
Match: SP4 (Transcription factor Sp4 OS=Homo sapiens GN=SP4 PE=1 SV=2)

HSP 1 Score: 199.904 bits (507), Expect = 3.680e-54
Identity = 85/115 (73.91%), Postives = 93/115 (80.87%), Query Frame = 2 
Query: 1265 RRCRR--CKCPNCLSGQ---PSEPNKPKQHLCHIPGCGKVYGKTSHLKAHLRWHAGLRPFVCNWLFCNKSFTRSDELQRHLRTHTGEKRFACQECGKRFTRSDHLSKHMKTHQNK 1594
            +R RR  C CPNC  G+    +EP K KQH+CHI GCGKVYGKTSHL+AHLRWH G RPF+CNW+FC K FTRSDELQRH RTHTGEKRF C EC KRF RSDHLSKH+KTHQNK
Sbjct:  618 KRLRRVACSCPNCREGEGRGSNEPGKKKQHICHIEGCGKVYGKTSHLRAHLRWHTGERPFICNWMFCGKRFTRSDELQRHRRTHTGEKRFECPECSKRFMRSDHLSKHVKTHQNK 732
The following BLAST results are available for this feature:
BLAST of TCONS_00015065 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SP43.680e-5473.91Transcription factor Sp4 OS=Homo sapiens GN=SP4 PE... [more]
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